Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Roseobacter sp. MED193

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF BioR Biotin biosynthesis 2 3
TF CadR-PbrR Lead ion, (Pb2+); Cadmium, ion (Cd2+) Lead resistance; Cadmium resistance 5 5
TF CceR (GapR) 6-phosphogluconate Central carbohydrate metabolism 16 21
TF Chvl 1 1
TF CueR Copper ion, (Cu+) Copper resistance 2 2
TF EutR Ectoine utilization 3 3
TF EutR Ethanolamine Ethanolamine utilization 2 4
TF FnrN Oxygen Oxidative stress response; Nitrogen fixation 8 7
TF HrcA Heat shock Heat shock response 1 1
TF HutC cis-Urocanic acid Histidine utilization 3 2
TF HypR2 4-hydroxyproline Proline and 4-hydrohyproline utilization 4 3
TF Irr Heme Iron homeostasis 5 2
TF IscR Iron-sulfur cluster redox state; Iron ion, (Fe2+) Iron-sulfur cluster biogenesis; Iron homeostasis 11 10
TF LexA DNA damage SOS response 11 10
TF LiuR Branched-chain amino acid degradation 2 1
TF MetR Homocysteine Methionine biosynthesis 2 2
TF Mur Manganese ion, (Mn2+) Manganese homeostasis 3 3
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 1 1
TF NrtR Adenosine diphosphate ribose NAD biosynthesis 1 2
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 10 10
TF PaaR Phenylacetyl-CoA Phenylacetic acid degradation 3 2
TF PhnF Phosphonate utilization 4 2
TF RutR Uracil Pyrimidine utilization 9 8
TF SPO0590 Sugar utilization 2 4
TF SoxR Paraquat Superoxide stress response 3 3
TF TauR Taurine Taurine utilization 5 2
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 2 2
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 7 4
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA Glycine Glycine Glycine metabolism 3 3
RNA S15 Ribosome biogenesis 1 1
RNA SAM-SAH S-adenosylmethionine; S-adenosylhomocysteine Methionine metabolism 1 1
RNA SAM_alpha S-adenosylmethionine Methionine biosynthesis 3 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 5 2
RNA serC Serine biosynthesis 1 1
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