Regulons of Loktanella vestfoldensis SKA53

Allows to visualize regulome content in the context of metabolic pathways



Type	Regulator	Effector	Pathway	Operons	Sites
TF	AglR	Alpha-glucoside; Maltose; Sucrose; Trehalose	Alpha-glucosides utilization	2	2
TF	CceR (GapR)	6-phosphogluconate	Central carbohydrate metabolism	16	13
TF	EutR		Ectoine utilization	4	4
TF	EutR	Ethanolamine	Ethanolamine utilization	2	2
TF	FnrN	Oxygen	Oxidative stress response; Nitrogen fixation	7	6
TF	HrcA	Heat shock	Heat shock response	1	1
TF	IolR		Inositol utilization	4	4
TF	Irr	Heme	Iron homeostasis	5	4
TF	IscR	Iron-sulfur cluster redox state; Iron ion, (Fe2+)	Iron-sulfur cluster biogenesis; Iron homeostasis	9	10
TF	LexA	DNA damage	SOS response	9	9
TF	LiuR		Branched-chain amino acid degradation	1	1
TF	MetR	Homocysteine	Methionine biosynthesis	4	3
TF	Mur	Manganese ion, (Mn2+)	Manganese homeostasis	3	1
TF	NikR	Nickel ion, (Ni2+)	Nickel homeostasis	1	1
TF	NrdR	Deoxyribonucleotides	Deoxyribonucleotide biosynthesis	1	1
TF	NtrC	Phosphorylated NtrB, signal histidine kinase	Nitrogen assimilation	6	6
TF	PhnF		Phosphonate utilization	3	2
TF	PpsR	Blue light	Photosynthesis	11	19
TF	RutR	Uracil	Pyrimidine utilization	6	4
TF	SmoR	Sorbitol	Sorbitol utilization; Mannitol utilization	4	2
TF	TauR	Taurine	Taurine utilization	3	2
TF	Zur	Zinc ion, (Zn2+)	Zinc homeostasis	2	2
RNA	Cobalamin	Adenosylcobalamin	Cobalamin biosynthesis	7	1
RNA	Glycine	Glycine	Glycine metabolism	1	2
RNA	S15		Ribosome biogenesis	1	1
RNA	SAM-SAH	S-adenosylmethionine; S-adenosylhomocysteine	Methionine metabolism	1	1
RNA	SAM_alpha	S-adenosylmethionine	Methionine biosynthesis	3	1
RNA	TPP	Thiamine pyrophosphate	Thiamine biosynthesis	2	1
RNA	serC		Serine biosynthesis	1	1

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --