Regulon of FnrN in Loktanella vestfoldensis SKA53
| Regulator type: | Transcription factor |
| TF locus tag: | SKA53_08756 |
| Regulator family: | CRP |
| Regulation mode: | activator (repressor) |
| Biological process: | Oxidative stress response; Nitrogen fixation |
| Effector: | Oxygen |
| Regulog: | FnrN - Rhodobacterales |
| Statistics of regulated genes: | |
| - Genes | 10 |
| - Operons | 4 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By trascription factor - FnrN/FixK
- By TF family - CRP
- By effector - Oxygen
- By pathway - Oxidative stress response
- By pathway - Nitrogen fixation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -136
Score: 5.1 Sequence: TCGTTGATGTGGATCAACCC
Position: -114
Score: 5.3 Sequence: CGTTTGACATGGATCAATGC
Locus tag: SKA53_08751
Name: uspA Funciton: Predicted universal stress protein UspA |
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uspA
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Predicted universal stress protein UspA
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Position: -167
Score: 4.9 Sequence: TTATTGATCCAGATCATGGT
Locus tag: SKA53_02751
Name: hemA Funciton: 5-aminolevulinate synthase (EC 2.3.1.37) |
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hemA
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5-aminolevulinate synthase (EC 2.3.1.37)
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Position: -177
Score: 5.6 Sequence: TGCTTGATCCACATCAAGGA
Locus tag: SKA53_08641
Name: ccoG Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation
Locus tag: SKA53_08646
Name: ccoH Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoH
Locus tag: SKA53_08651
Name: ccoI Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
Locus tag: SKA53_08656
Name: ccoS Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion |
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ccoG
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Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation
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ccoH
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Type cbb3 cytochrome oxidase biogenesis protein CcoH
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ccoI
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Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
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ccoS
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Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion
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Position: -105
Score: 5.3 Sequence: GCATTGATCCATGTCAAACG
Position: -83
Score: 5.1 Sequence: GGGTTGATCCACATCAACGA
Locus tag: SKA53_08741
Name: ccoN Funciton: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
Locus tag: SKA53_08736
Name: ccoO Funciton: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
Locus tag: SKA53_08731
Name: ccoQ Funciton: Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)
Locus tag: SKA53_08726
Name: ccoP Funciton: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) |
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ccoN
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Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
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ccoO
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Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
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ccoQ
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Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)
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ccoP
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Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |