Regulon of IscR in Loktanella vestfoldensis SKA53

Properties
Regulator type:	Transcription factor
TF locus tag:	SKA53_05183
Regulator family:	Rrf2
Regulation mode:	repressor (activator)
Biological process:	Iron-sulfur cluster biogenesis; Iron homeostasis
Effector:	Iron-sulfur cluster redox state; Iron ion, (Fe2+)
Regulog:	IscR - Rhodobacterales
Statistics of regulated genes:
- Genes	24
- Operons	9
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 125 sites [see more]

Member of regulog collections

By trascription factor - IscR
By taxonomy - Rhodobacterales
By TF family - Rrf2
By effector - Iron-sulfur cluster redox state
By effector - Iron ion, (Fe2+)
By pathway - Iron-sulfur cluster biogenesis
By pathway - Iron homeostasis

Regulated operons
	Locus Tag	Name	Function
Position: -29 Score: 3.6 Sequence: CCCAATTGTTTTGATCAGG Locus tag: SKA53_06010 Name: fbpC Funciton: Ferric iron ABC transporter, ATP-binding protein
	SKA53_06010	fbpC	Ferric iron ABC transporter, ATP-binding protein
Position: -78 Score: 4.8 Sequence: CCCGACTAAAATATTCAGG Position: -53 Score: 4.1 Sequence: CCCAAGTAAAAGAGTCGGG Locus tag: SKA53_05313 Name: fbpA Funciton: Ferric iron ABC transporter, iron-binding protein
	SKA53_05313	fbpA	Ferric iron ABC transporter, iron-binding protein
Position: -47 Score: 4.8 Sequence: GCTGACAGAAATAATCAGA Locus tag: SKA53_06267 Name: hemP Funciton: Hemin uptake protein HemP
	SKA53_06267	hemP	Hemin uptake protein HemP
Position: -33 Score: 5.1 Sequence: GCTGACTATATTTGTCGGG Locus tag: SKA53_06277 Name: null Funciton: hypothetical protein Locus tag: SKA53_06272 Name: dps Funciton: DNA-binding ferritin-like protein (oxidative damage protectant)
	SKA53_06277		hypothetical protein
	SKA53_06272	dps	DNA-binding ferritin-like protein (oxidative damage protectant)
Position: -45 Score: 4.8 Sequence: CCTGATTATTTATGTCAGG Locus tag: SKA53_15396 Name: null Funciton: hypothetical protein Locus tag: SKA53_15391 Name: SKA53_15391 Funciton: hypothetical protein
	SKA53_15396		hypothetical protein
	SKA53_15391	SKA53_15391	hypothetical protein
Position: -113 Score: 4.6 Sequence: CTTGACTGTTTGTGTCGGA Locus tag: SKA53_06417 Name: hmuR Funciton: TonB-dependent hemin , ferrichrome receptor Locus tag: SKA53_06412 Name: Mlr1156 Funciton: Mlr1156 protein Locus tag: SKA53_06407 Name: exbB Funciton: Ferric siderophore transport system, biopolymer transport protein ExbB Locus tag: SKA53_06402 Name: exbD1 Funciton: Ferric siderophore transport system, periplasmic binding protein ExbD Locus tag: SKA53_06397 Name: exbD2 Funciton: Ferric siderophore transport system, periplasmic binding protein ExbD Locus tag: SKA53_06392 Name: tonB Funciton: Ferric siderophore transport system, periplasmic binding protein TonB
	SKA53_06417	hmuR	TonB-dependent hemin , ferrichrome receptor
	SKA53_06412	Mlr1156	Mlr1156 protein
	SKA53_06407	exbB	Ferric siderophore transport system, biopolymer transport protein ExbB
	SKA53_06402	exbD1	Ferric siderophore transport system, periplasmic binding protein ExbD
	SKA53_06397	exbD2	Ferric siderophore transport system, periplasmic binding protein ExbD
	SKA53_06392	tonB	Ferric siderophore transport system, periplasmic binding protein TonB
Position: -72 Score: 4.6 Sequence: TCCGATCAAATAAGTCAGA Locus tag: SKA53_02241 Name: fbpB Funciton: Ferric iron ABC transporter, permease protein
	SKA53_02241	fbpB	Ferric iron ABC transporter, permease protein
Position: -131 Score: 4.2 Sequence: CTTGACGAAAACTATCAGG Locus tag: SKA53_05183 Name: iscR Funciton: Iron-sulfur cluster regulator IscR, Rrf2 family Locus tag: SKA53_05178 Name: iscS Funciton: Cysteine desulfurase (EC 2.8.1.7) Locus tag: SKA53_05173 Name: sufB Funciton: Iron-sulfur cluster assembly protein SufB Locus tag: SKA53_05168 Name: sufC Funciton: Iron-sulfur cluster assembly ATPase protein SufC Locus tag: SKA53_05163 Name: sufD Funciton: Iron-sulfur cluster assembly protein SufD Locus tag: SKA53_05158 Name: RSP_0433 Funciton: hypothetical protein Locus tag: SKA53_05153 Name: null Funciton: hypothetical protein Locus tag: SKA53_05148 Name: sufS Funciton: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
	SKA53_05183	iscR	Iron-sulfur cluster regulator IscR, Rrf2 family
	SKA53_05178	iscS	Cysteine desulfurase (EC 2.8.1.7)
	SKA53_05173	sufB	Iron-sulfur cluster assembly protein SufB
	SKA53_05168	sufC	Iron-sulfur cluster assembly ATPase protein SufC
	SKA53_05163	sufD	Iron-sulfur cluster assembly protein SufD
	SKA53_05158	RSP_0433	hypothetical protein
	SKA53_05153		hypothetical protein
	SKA53_05148	sufS	Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
Position: -43 Score: 5.1 Sequence: CCTGACTAAAAAACTCAGG Locus tag: SKA53_14131 Name: hemP Funciton: Hemin uptake protein HemP Locus tag: SKA53_14126 Name: null Funciton: hypothetical protein
	SKA53_14131	hemP	Hemin uptake protein HemP
	SKA53_14126		hypothetical protein

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of IscR in Loktanella vestfoldensis SKA53

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --