Regulons of Rhodopseudomonas palustris CGA009

Allows to visualize regulome content in the context of metabolic pathways



Type	Regulator	Effector	Pathway	Operons	Sites
TF	CadR-PbrR	Lead ion, (Pb2+); Cadmium, ion (Cd2+)	Lead resistance; Cadmium resistance	1	1
TF	FixJ	Oxygen	Oxidative stress response	2	2
TF	FnrN/FixK/AadR	Oxygen	Oxidative stress response; Nitrogen fixation	37	31
TF	HrcA	Heat shock	Heat shock response	2	2
TF	Irr	Heme	Iron homeostasis	20	9
TF	LexA	DNA damage	SOS response	21	13
TF	ModE	Molybdate	Molybdopterin biosynthesis	2	2
TF	Mur	Iron ion, (Fe2+)	Manganese homeostasis	3	2
TF	NadQ		NAD biosynthesis	1	2
TF	NifA		Nitrogen fixation	18	13
TF	NikR	Nickel ion, (Ni2+)	Nickel homeostasis	2	2
TF	NnrR	Nitric oxide	Denitrification	13	14
TF	NrdR	Deoxyribonucleotides	Deoxyribonucleotide biosynthesis	1	1
TF	NtrC	Phosphorylated NtrB, signal histidine kinase	Nitrogen assimilation	10	7
TF	PaaR	Phenylacetyl-CoA	Phenylacetic acid degradation	5	5
TF	PdxR		Pyridoxine/pyridoxal homeostasis	3	2
TF	PhnF		Phosphonate utilization	4	2
TF	PsrA	Oleate	Fatty acid degradation	2	4
TF	RPA0105			2	2
TF	TauR2			3	3
TF	VanR	Vanillate	Vanillate utilization	1	2
TF	Zur	Zinc ion, (Zn2+)	Zinc homeostasis	4	3
RNA	Cobalamin	Adenosylcobalamin	Cobalamin biosynthesis	12	9
RNA	Glycine	Glycine	Glycine metabolism	3	2
RNA	SAM_alpha	S-adenosylmethionine	Methionine biosynthesis	2	2
RNA	TPP	Thiamine pyrophosphate	Thiamine biosynthesis	2	1
RNA	Trp_leader		Tryptophan biosynthesis	1	1
RNA	mini-ykkC		Multidrug resistance	3	2
RNA	serC		Serine biosynthesis	1	1
RNA	speF		Ornithine degradation	1	1
RNA	ykkC-yxkD		Multidrug resistance	2	1

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --