Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LexA in Rhodopseudomonas palustris CGA009

Properties
Regulator type: Transcription factor
TF locus tag: RPA2903
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Regulog: LexA - Rhizobiales
Statistics of regulated genes:
- Genes 17
- Operons 12
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 212 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -76
Score: 1.8
Sequence: GAACATATCATGAAC
Locus tag: RPA1801
Name: imuA
Funciton: Predicted RecA/RadA recombinase
Locus tag: RPA1802
Name: imuB
Funciton: DNA polymerase-like protein PA0670
Locus tag: RPA1803
Name: dnaE2
Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7)
RPA1801
imuA
Predicted RecA/RadA recombinase
RPA1802
imuB
DNA polymerase-like protein PA0670
RPA1803
dnaE2
DNA polymerase III alpha subunit (EC 2.7.7.7)
Position: 6
Score: 5.2
Sequence: GTTCATGATTTGTTT
Locus tag: RPA2903
Name: lexA
Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
RPA2903
lexA
SOS-response repressor and protease LexA (EC 3.4.21.88)
Position: -97
Score: 5.1
Sequence: GTTCTTCCTATGTTC
Locus tag: RPA2816
Name: uvrA
Funciton: Excinuclease ABC subunit A
RPA2816
uvrA
Excinuclease ABC subunit A
Position: -38
Score: 5.7
Sequence: GTTCTTGATTTGTTC
Locus tag: RPA1033
Name: PF04055
Funciton: Radical SAM domain protein
RPA1033
PF04055
Radical SAM domain protein
Position: -53
Score: 0.4
Sequence: GAACAAAGCAGGAAT
Locus tag: RPA2802
Name: uvrD2
Funciton: ATP-dependent DNA helicase II
RPA2802
uvrD2
ATP-dependent DNA helicase II
Position: -54
Score: 1.6
Sequence: GAACAAAATGTGAAC
Locus tag: RPA3089
Name: radA
Funciton: DNA repair protein RadA
RPA3089
radA
DNA repair protein RadA
Position: -102
Score: 1.6
Sequence: GAACATATTGCGAAC
Position: -84
Score: 0.7
Sequence: GAACAAATGGGGTAC
Locus tag: RPA3851
Name: recA
Funciton: Recombinase A
RPA3851
recA
Recombinase A
Position: -63
Score: 4.5
Sequence: GTTCTTGAAACGTTC
Locus tag: RPA4380
Name: rna
Funciton: Ribonuclease T2
RPA4380
rna
Ribonuclease T2
Position: -44
Score: 4.5
Sequence: GTTGCTATTTTGTTC
Locus tag: RPA1099
Name: ruvC
Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Locus tag: RPA1100
Name: ruvA
Funciton: Holliday junction DNA helicase RuvA
Locus tag: RPA1101
Name: cdd
Funciton: Cytidine deaminase (EC 3.5.4.5)
Locus tag: RPA1102
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
RPA1099
ruvC
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
RPA1100
ruvA
Holliday junction DNA helicase RuvA
RPA1101
cdd
Cytidine deaminase (EC 3.5.4.5)
RPA1102
ruvB
Holliday junction DNA helicase RuvB
Position: -67
Score: 4.4
Sequence: GTTCACTTAATGTTC
Locus tag: RPA0318
Name: yifB
Funciton: Conserved hypothetical protein
RPA0318
yifB
Conserved hypothetical protein
Position: -18
Score: 4.8
Sequence: GTTCTATCTTCGTTC
Locus tag: RPA0620
Name: rmuC
Funciton: DNA recombination protein RmuC
RPA0620
rmuC
DNA recombination protein RmuC
Position: -229
Score: 1.1
Sequence: GAACAAAAATAGAAC
Locus tag: RPA2814
Name: ssb
Funciton: Single-stranded DNA-binding protein
RPA2814
ssb
Single-stranded DNA-binding protein
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