Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of FnrN/FixK/AadR in Rhodopseudomonas palustris CGA009

Properties
Regulator type: Transcription factor
TF locus tag: RPA4250, RPA4234
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Oxidative stress response; Nitrogen fixation
Effector: Oxygen
Regulog: FnrN/FixK/AadR - Rhizobiales
Statistics of regulated genes:
- Genes 74
- Operons 28
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 192 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -243
Score: 4.5
Sequence: CTTTTGACCTTGCTCAATAT
Position: -143
Score: 4.4
Sequence: GAATTGTCCGAGATCAACGA
Locus tag: RPA1505
Name: hemC
Funciton: Porphobilinogen deaminase (EC 2.5.1.61)
Locus tag: RPA1506
Name: bchI
Funciton: Protoporphyrin IX Mg-chelatase subunit I (EC 6.6.1.1)
Locus tag: RPA1507
Name: bchD
Funciton: Protoporphyrin IX Mg-chelatase subunit D (EC 6.6.1.1)
RPA1505
hemC
Porphobilinogen deaminase (EC 2.5.1.61)
RPA1506
bchI
Protoporphyrin IX Mg-chelatase subunit I (EC 6.6.1.1)
RPA1507
bchD
Protoporphyrin IX Mg-chelatase subunit D (EC 6.6.1.1)
Position: -127
Score: 5.2
Sequence: ACCTTGATCTGTGTCAAGCT
Locus tag: RPA4234
Name: aadR
Funciton: Nitrogen fixation and oxygen response transcriptional regulator AadR, Crp family
RPA4234
aadR
Nitrogen fixation and oxygen response transcriptional regulator AadR, Crp family
Position: -21
Score: 5.2
Sequence: AGCTTGACACAGATCAAGGT
Locus tag: RPA4235
Name: blr6062
Funciton: Putative cytochrome C6 precursor
RPA4235
blr6062
Putative cytochrome C6 precursor
Position: -79
Score: 5.1
Sequence: ATTTTGATTTCGATCAAACG
Locus tag: RPA0019
Name: ccoN
Funciton: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
Locus tag: RPA0018
Name: ccoO
Funciton: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
Locus tag: RPA0017
Name: ccoQ
Funciton: Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)
Locus tag: RPA0016
Name: ccoP
Funciton: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
Locus tag: RPA0015
Name: ccoG
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation
Locus tag: RPA0014
Name: ccoH
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoH
Locus tag: RPA0013
Name: ccoI
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
Locus tag: RPA0012
Name: ccoS
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion
RPA0019
ccoN
Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
RPA0018
ccoO
Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
RPA0017
ccoQ
Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)
RPA0016
ccoP
Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
RPA0015
ccoG
Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation
RPA0014
ccoH
Type cbb3 cytochrome oxidase biogenesis protein CcoH
RPA0013
ccoI
Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
RPA0012
ccoS
Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion
Position: -98
Score: 5.6
Sequence: CATTTGATCCAGATCAAATC
Locus tag: RPA4502
Name: ompW
Funciton: Outer membrane protein W precursor
RPA4502
ompW
Outer membrane protein W precursor
Position: -221
Score: 4
Sequence: CTTCTGATCTAAATCACGGC
Locus tag: RPA4645
Name: cbbF
Funciton: Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11)
Locus tag: RPA4644
Name: cbbP
Funciton: Phosphoribulokinase (EC 2.7.1.19)
Locus tag: RPA4643
Name: cbbT1
Funciton: Transketolase (EC 2.2.1.1)
Locus tag: RPA4642
Name: cbbA
Funciton: Fructose-bisphosphate aldolase class II (EC 4.1.2.13)
Locus tag: RPA4641
Name: cbbM
Funciton: Ribulose bisphosphate carboxylase (EC 4.1.1.39)
RPA4645
cbbF
Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11)
RPA4644
cbbP
Phosphoribulokinase (EC 2.7.1.19)
RPA4643
cbbT1
Transketolase (EC 2.2.1.1)
RPA4642
cbbA
Fructose-bisphosphate aldolase class II (EC 4.1.2.13)
RPA4641
cbbM
Ribulose bisphosphate carboxylase (EC 4.1.1.39)
Position: -157
Score: 5.3
Sequence: CCTTTGATTCAAATCAAGTT
Locus tag: RPA1919
Name: ccmI
Funciton: Cytochrome c heme lyase subunit CcmI
Locus tag: RPA1920
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: RPA1921
Name: ccmF
Funciton: Cytochrome c heme lyase subunit CcmF
Locus tag: RPA1922
Name: ccmH
Funciton: Cytochrome c heme lyase subunit CcmH
RPA1919
ccmI
Cytochrome c heme lyase subunit CcmI
RPA1920
ccmE
Cytochrome c-type biogenesis protein CcmE, heme chaperone
RPA1921
ccmF
Cytochrome c heme lyase subunit CcmF
RPA1922
ccmH
Cytochrome c heme lyase subunit CcmH
Position: -71
Score: 5
Sequence: CGTTTGATCTGCGTCAACAA
Locus tag: RPA1668
Name: bchE
Funciton: Mg-protoporphyrin IX monomethyl ester oxidative cyclase (EC 1.14.13.81)
RPA1668
bchE
Mg-protoporphyrin IX monomethyl ester oxidative cyclase (EC 1.14.13.81)
Position: -188
Score: 5.3
Sequence: TCCTTGATGCACATCAAATG
Position: -70
Score: 4.5
Sequence: GATTTGACTGCGGTCAATTC
Locus tag: RPA2339
Name: irr
Funciton: Iron-responsive regulator Irr, Fur family
RPA2339
irr
Iron-responsive regulator Irr, Fur family
Position: -161
Score: 5.2
Sequence: GGTTTGACCTTGATCAATTC
Locus tag: RPA4241
Name: COG2524
Funciton: Predicted transcriptional regulator, contains C-terminal CBS domains
RPA4241
COG2524
Predicted transcriptional regulator, contains C-terminal CBS domains
Position: -169
Score: 5.2
Sequence: GCATTGATCTTCATCAAGCC
Locus tag: RPA0854
Name: hemA
Funciton: 5-aminolevulinate synthase (EC 2.3.1.37)
RPA0854
hemA
5-aminolevulinate synthase (EC 2.3.1.37)
Position: -149
Score: 5.2
Sequence: GAATTGATCAAGGTCAAACC
Locus tag: RPA4242
Name: COG2187
Funciton: Predicted kinase
RPA4242
COG2187
Predicted kinase
Position: -72
Score: 5.2
Sequence: CGGTTGATCAAGATCAACTG
Locus tag: RPA1090
Name: RPA1090
Funciton: Predicted transcriptional regulator, Crp family
RPA1090
RPA1090
Predicted transcriptional regulator, Crp family
Position: -107
Score: 4.7
Sequence: CGGTTGCGCCAGATCAATGT
Locus tag: RPA4462
Name: null
Funciton: Lipocalin-related protein and Bos/Can/Equ allergen
RPA4462
Lipocalin-related protein and Bos/Can/Equ allergen
Position: -130
Score: 5
Sequence: GAGTTGATCCGCGTCAACCA
Locus tag: RPA4264
Name: nuoA
Funciton: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
Locus tag: RPA4263
Name: nuoB
Funciton: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
Locus tag: RPA4262
Name: nouD
Funciton: NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)
Locus tag: RPA4261
Name: nuoE
Funciton: NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)
Locus tag: RPA4260
Name: nuoF
Funciton: NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)
Locus tag: RPA4259
Name: nuoG
Funciton: NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)
Locus tag: RPA4258
Name: nuoH
Funciton: NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
Locus tag: RPA4257
Name: nuoI
Funciton: NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)
Locus tag: RPA4256
Name: nuoJ
Funciton: NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
Locus tag: RPA4255
Name: nuoK
Funciton: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
Locus tag: RPA4254
Name: nuoL
Funciton: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)
Locus tag: RPA4253
Name: nuoM
Funciton: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
Locus tag: RPA4252
Name: nuoN
Funciton: NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)
RPA4264
nuoA
NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
RPA4263
nuoB
NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
RPA4262
nouD
NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)
RPA4261
nuoE
NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)
RPA4260
nuoF
NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)
RPA4259
nuoG
NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)
RPA4258
nuoH
NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
RPA4257
nuoI
NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)
RPA4256
nuoJ
NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
RPA4255
nuoK
NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
RPA4254
nuoL
NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)
RPA4253
nuoM
NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
RPA4252
nuoN
NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)
Position: -92
Score: 4.8
Sequence: GGATTGAGACAGATCAATCC
Locus tag: RPA4249
Name: bll2758
Funciton: Predicted transcriptional regulator, two-component, OmpR family
RPA4249
bll2758
Predicted transcriptional regulator, two-component, OmpR family
Position: -119
Score: 4.2
Sequence: CTCTTGATCTTGCGCAAAAC
Locus tag: RPA3015
Name: phyB1
Funciton: Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-); Cyanobacterial phytochrome B
Locus tag: RPA3016
Name: phyB2
Funciton: Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-); Cyanobacterial phytochrome B
Locus tag: RPA3017
Name: rphyB
Funciton: Two-component system response regulator
Locus tag: RPA3018
Name: COG0642
Funciton: Hypothetical protein
RPA3015
phyB1
Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-); Cyanobacterial phytochrome B
RPA3016
phyB2
Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-); Cyanobacterial phytochrome B
RPA3017
rphyB
Two-component system response regulator
RPA3018
COG0642
Hypothetical protein
Position: -69
Score: 4.9
Sequence: TATTTGACGCACGTCAAATA
Locus tag: RPA1006
Name: mhpA
Funciton: Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8)
Locus tag: RPA1007
Name: mhpB
Funciton: Protocatechuate 4,5-dioxygenase beta chain (EC 1.13.11.8)
RPA1006
mhpA
Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8)
RPA1007
mhpB
Protocatechuate 4,5-dioxygenase beta chain (EC 1.13.11.8)
Position: -451
Score: 4.6
Sequence: GATTTGAGCTAGAACAATGC
Locus tag: RPA1525
Name: pufB
Funciton: Light-harvesting LHI, beta subunit
Locus tag: RPA1526
Name: pufA
Funciton: Light-harvesting LHI, alpha subunit
RPA1525
pufB
Light-harvesting LHI, beta subunit
RPA1526
pufA
Light-harvesting LHI, alpha subunit
Position: 3
Score: 4
Sequence: AGCTTGATCCGACGCATTGT
Locus tag: RPA4694
Name: COG3181
Funciton: Conserved hypothetical protein
Locus tag: RPA4695
Name: ligR
Funciton: Transcriptional regulator LigR, LysR family
RPA4694
COG3181
Conserved hypothetical protein
RPA4695
ligR
Transcriptional regulator LigR, LysR family
Position: -65
Score: 4.4
Sequence: TGCTTGACTTTGGTCATGGA
Locus tag: RPA0670
Name: hbaB
Funciton: 4-hydroxybenzoyl-CoA reductase, gamma subunit (EC 1.3.99.20)
Locus tag: RPA0671
Name: hbaC
Funciton: 4-hydroxybenzoyl-CoA reductase, alpha subunit (EC 1.3.99.20)
Locus tag: RPA0672
Name: hbaD
Funciton: 4-hydroxybenzoyl-CoA reductase, beta subunit (EC 1.3.99.20)
RPA0670
hbaB
4-hydroxybenzoyl-CoA reductase, gamma subunit (EC 1.3.99.20)
RPA0671
hbaC
4-hydroxybenzoyl-CoA reductase, alpha subunit (EC 1.3.99.20)
RPA0672
hbaD
4-hydroxybenzoyl-CoA reductase, beta subunit (EC 1.3.99.20)
Position: -173
Score: 4
Sequence: GAATTGACTCAGCACAAAAG
Position: -100
Score: 4.4
Sequence: CCGTTGACTTAGCGCAAATA
Locus tag: RPA1224
Name: iorA
Funciton: Indolepyruvate oxidoreductase subunit IorA (EC 1.2.7.8)
Locus tag: RPA1225
Name: iorB
Funciton: Indolepyruvate oxidoreductase subunit IorB (EC 1.2.7.8) / Ferredoxin
Locus tag: RPA1226
Name: korA
Funciton: 2-oxoglutarate oxidoreductase, alpha subunit (EC 1.2.7.3)
Locus tag: RPA1227
Name: korB
Funciton: 2-oxoglutarate oxidoreductase, beta subunit (EC 1.2.7.3)
Locus tag: RPA1228
Name: korC
Funciton: 2-oxoglutarate oxidoreductase, gamma subunit (EC 1.2.7.3)
Locus tag: RPA1229
Name: paaK
Funciton: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
RPA1224
iorA
Indolepyruvate oxidoreductase subunit IorA (EC 1.2.7.8)
RPA1225
iorB
Indolepyruvate oxidoreductase subunit IorB (EC 1.2.7.8) / Ferredoxin
RPA1226
korA
2-oxoglutarate oxidoreductase, alpha subunit (EC 1.2.7.3)
RPA1227
korB
2-oxoglutarate oxidoreductase, beta subunit (EC 1.2.7.3)
RPA1228
korC
2-oxoglutarate oxidoreductase, gamma subunit (EC 1.2.7.3)
RPA1229
paaK
Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
Position: -235
Score: 5
Sequence: GGCTTGAGCAAGGTCAAGCG
Locus tag: RPA4243
Name: phaC
Funciton: Polyhydroxyalkanoic acid synthase
RPA4243
phaC
Polyhydroxyalkanoic acid synthase
Position: -85
Score: 3.9
Sequence: AGCTTGTGCTGGGACAAACA
Locus tag: RPA4145
Name: nirK
Funciton: Copper-containing nitrite reductase (EC 1.7.2.1)
Locus tag: RPA4146
Name: nirV
Funciton: Nitrite reductase accessory protein NirV
RPA4145
nirK
Copper-containing nitrite reductase (EC 1.7.2.1)
RPA4146
nirV
Nitrite reductase accessory protein NirV
Position: -234
Score: 5.4
Sequence: TAATTGATCTCGATCAAATA
Locus tag: RPA0746
Name: mtrA
Funciton: Decaheme cytochrome c MtrA
RPA0746
mtrA
Decaheme cytochrome c MtrA
Position: -120
Score: 5.4
Sequence: AATTTGATCCGCATCAAATT
Locus tag: RPA0657
Name: badD
Funciton: Benzoyl-CoA reductase subunit BadD (EC 1.3.99.15)
Locus tag: RPA0658
Name: badE
Funciton: Benzoyl-CoA reductase subunit BadE (EC 1.3.99.15)
Locus tag: RPA0659
Name: badF
Funciton: Benzoyl-CoA reductase subunit BadF (EC 1.3.99.15)
Locus tag: RPA0660
Name: badG
Funciton: Benzoyl-CoA reductase subunit BadG (EC 1.3.99.15)
Locus tag: RPA0661
Name: badA
Funciton: Benzoate-CoA ligase (EC 6.2.1.25)
RPA0657
badD
Benzoyl-CoA reductase subunit BadD (EC 1.3.99.15)
RPA0658
badE
Benzoyl-CoA reductase subunit BadE (EC 1.3.99.15)
RPA0659
badF
Benzoyl-CoA reductase subunit BadF (EC 1.3.99.15)
RPA0660
badG
Benzoyl-CoA reductase subunit BadG (EC 1.3.99.15)
RPA0661
badA
Benzoate-CoA ligase (EC 6.2.1.25)
Position: 13
Score: 5
Sequence: GTTTTGATCCAGAGCAAAGA
Locus tag: RPA0260
Name: RPA0260
Funciton: Possible photosynthesis gene regulator, AppA/PpaA family
RPA0260
RPA0260
Possible photosynthesis gene regulator, AppA/PpaA family
Position: -58
Score: 5.7
Sequence: CGTTTGATCCAGATCAAACT
Locus tag: RPA1014
Name: bsr3073
Funciton: Conserved hypothetical protein
RPA1014
bsr3073
Conserved hypothetical protein
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise