Regulon of Cobalamin in Rhodopseudomonas palustris CGA009

Properties
Regulator type:	RNA regulatory element
Name:	Cobalamin
RFAM:	RF00174
Regulation mode:
Biological process:	Cobalamin biosynthesis
Effector:	Adenosylcobalamin
Regulog:	Cobalamin - Rhizobiales
Under regulation:
- Genes	23
- Operons	9

Member of regulog collections

By taxonomy - Rhizobiales
By RNA motif - Cobalamin
By effector - Adenosylcobalamin
By pathway - Cobalamin biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -389 Score: 121.1 Sequence: CTGGTTTTGACGTCT... Locus tag: RPA0994 Name: crdX Funciton: Cobalamine-related hypothetical metal-binding protein CrdX
	RPA0994	crdX	Cobalamine-related hypothetical metal-binding protein CrdX
Position: -303 Score: 132.1 Sequence: ATAGTGATCGCCGTC... Locus tag: RPA2397 Name: metE Funciton: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
	RPA2397	metE	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
Position: -315 Score: 119.3 Sequence: CCAAACATCGCGCGC... Locus tag: RPA2091 Name: null Funciton: Predicted non-orthologous displacement of CobG Locus tag: RPA2090 Name: cbiC Funciton: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) Locus tag: RPA2089 Name: cbiL Funciton: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) Locus tag: RPA2088 Name: cbiH Funciton: Cobalt-precorrin-3b C17-methyltransferase
	RPA2091		Predicted non-orthologous displacement of CobG
	RPA2090	cbiC	Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
	RPA2089	cbiL	Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
	RPA2088	cbiH	Cobalt-precorrin-3b C17-methyltransferase
Position: -217 Score: 124 Sequence: CTAGCGTGCCAAGCG... Locus tag: RPA0713 Name: cfrX Funciton: Predicted metal-binding protein Locus tag: RPA0714 Name: cobU Funciton: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) Locus tag: RPA0715 Name: cobW Funciton: CobW GTPase involved in cobalt insertion for B12 biosynthesis Locus tag: RPA0716 Name: cobN Funciton: CobN component of cobalt chelatase involved in B12 biosynthesis Locus tag: RPA0717 Name: btuR Funciton: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) Locus tag: RPA0718 Name: cbiP Funciton: Cobyric acid synthase
	RPA0713	cfrX	Predicted metal-binding protein
	RPA0714	cobU	Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
	RPA0715	cobW	CobW GTPase involved in cobalt insertion for B12 biosynthesis
	RPA0716	cobN	CobN component of cobalt chelatase involved in B12 biosynthesis
	RPA0717	btuR	Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
	RPA0718	cbiP	Cobyric acid synthase
Position: -418 Score: 111.5 Sequence: GTGGTGCCGCTCGCT... Locus tag: RPA2094 Name: cobT Funciton: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) Locus tag: RPA2095 Name: cobS Funciton: Cobalamin synthase Locus tag: RPA2096 Name: cbiP Funciton: Cobyric acid synthase Locus tag: RPA2097 Name: cobF Funciton: Precorrin-6A synthase (EC 2.1.1.152)
	RPA2094	cobT	Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
	RPA2095	cobS	Cobalamin synthase
	RPA2096	cbiP	Cobyric acid synthase
	RPA2097	cobF	Precorrin-6A synthase (EC 2.1.1.152)
Position: -289 Score: 119.5 Sequence: ATTTGATCGCGCCCG... Locus tag: RPA0724 Name: hoxN Funciton: HoxN/HupN/NixA family cobalt transporter Locus tag: RPA0723 Name: btuC1 Funciton: Vitamin B12 ABC transporter, permease component BtuC Locus tag: RPA0722 Name: btuD1 Funciton: Vitamin B12 ABC transporter, ATPase component BtuD
	RPA0724	hoxN	HoxN/HupN/NixA family cobalt transporter
	RPA0723	btuC1	Vitamin B12 ABC transporter, permease component BtuC
	RPA0722	btuD1	Vitamin B12 ABC transporter, ATPase component BtuD
Position: -233 Score: 122.9 Sequence: TAACCCGAGGTTGTA... Locus tag: RPA2081 Name: btuF1 Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF
	RPA2081	btuF1	Vitamin B12 ABC transporter, B12-binding component BtuF
Position: -310 Score: 127.6 Sequence: CTTCTAATGGCGGTG... Locus tag: RPA4803 Name: btuB Funciton: Outer membrane vitamin B12 receptor BtuB
	RPA4803	btuB	Outer membrane vitamin B12 receptor BtuB
Position: -306 Score: 136.6 Sequence: CAATACCGTGACCAG... Locus tag: RPA0407 Name: btuB2 Funciton: Outer membrane vitamin B12 receptor BtuB Locus tag: RPA0406 Name: btuN Funciton: Optional hypothetical component of the B12 transporter BtuN
	RPA0407	btuB2	Outer membrane vitamin B12 receptor BtuB
	RPA0406	btuN	Optional hypothetical component of the B12 transporter BtuN

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of Cobalamin in Rhodopseudomonas palustris CGA009

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --