Regulog Cobalamin - Rhizobiales
| Regulator type: | RNA regulatory element |
| Name: | Cobalamin |
| RFAM: | RF00174 |
| Regulation mode: | |
| Biological process: | Cobalamin biosynthesis |
| Effector: | Adenosylcobalamin |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Rhizobiales
- By RNA motif - Cobalamin
- By effector - Adenosylcobalamin
- By pathway - Cobalamin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Sinorhizobium meliloti 1021 | 7 | 4 |
| Rhizobium sp. NGR234 | 8 | 4 |
| Rhizobium leguminosarum bv. viciae 3841 | 8 | 3 |
| Rhizobium etli CFN 42 | 5 | 2 |
| Agrobacterium tumefaciens str. C58 (Cereon) | 18 | 6 |
| Mesorhizobium sp. BNC1 | 6 | 3 |
| Mesorhizobium loti MAFF303099 | 19 | 6 |
| Brucella melitensis 16M | 17 | 4 |
| Bartonella quintana str. Toulouse | ||
| Rhodopseudomonas palustris CGA009 | 23 | 9 |
| Bradyrhizobium japonicum USDA 110 | 15 | 5 |
| Bradyrhizobium sp. BTAi1 | 10 | 3 |
| Nitrobacter winogradskyi Nb-255 | 4 | 3 |
| Azorhizobium caulinodans ORS 571 | 4 | 2 |
| Xanthobacter autotrophicus Py2 | 15 | 3 |
| Genes | Function | |||||||||||||||
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| CRON 1. | ||||||||||||||||
| crdX |
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Rhodopseudomonas palustris CGA009 Site: position = -389 score = 121.08 sequence = CTGGTTTTGACGTCT... Gene: RPA0994: Cobalamine-related hypothetical metal-binding protein CrdX |
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Cobalamine-related hypothetical metal-binding protein CrdX |
| CRON 2. | ||||||||||||||||
| ardX |
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Sinorhizobium meliloti 1021 Site: position = -316 score = 103.13 sequence = TAGATGAGGACACTC... Gene: SMc00982: Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit |
*2
Rhizobium sp. NGR234 Site: position = -327 score = 109.21 sequence = CTCATATGAACACGC... Gene: NGR_c26320: Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit Gene: NGR_c04860: Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit |
Gene: RL0962: Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit |
Gene: RHE_CH00901: Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit |
Gene: Atu0726: Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit |
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Mesorhizobium loti MAFF303099 Site: position = -316 score = 105.83 sequence = ATTAGATCATGTCAT... Gene: mll5101: Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit |
Gene: BMEI0549: Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit |
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Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit |
| frdX |
Gene: SMc00981: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
2
Rhizobium sp. NGR234 Gene: NGR_c04870: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Gene: NGR_c26310: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
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Gene: Atu0727: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
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Gene: mll5100: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
Gene: BMEI0548: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
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Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
| CRON 3. | ||||||||||||||||
| btuB2 |
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Rhodopseudomonas palustris CGA009 Site: position = -306 score = 136.57 sequence = CAATACCGTGACCAG... Gene: RPA0407: Outer membrane vitamin B12 receptor BtuB |
*2
Bradyrhizobium japonicum USDA 110 Gene: blr3279: Outer membrane vitamin B12 receptor BtuB Site: position = -284 score = 142.49 sequence = TCCTAGATGCTCGCG... Gene: blr3278: Outer membrane vitamin B12 receptor BtuB |
Gene: BBta_3462: Outer membrane vitamin B12 receptor BtuB |
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Gene: AZC_2702: Outer membrane vitamin B12 receptor BtuB |
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Outer membrane vitamin B12 receptor BtuB |
| btuN |
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Gene: RPA0406: Optional hypothetical component of the B12 transporter BtuN |
Gene: blr3280: Optional hypothetical component of the B12 transporter BtuN |
Gene: BBta_3461: Optional hypothetical component of the B12 transporter BtuN |
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Gene: AZC_2703: Optional hypothetical component of the B12 transporter BtuN |
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Optional hypothetical component of the B12 transporter BtuN |
| CRON 4. | ||||||||||||||||
| hoxN |
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Rhodopseudomonas palustris CGA009 Site: position = -289 score = 119.46 sequence = ATTTGATCGCGCCCG... Gene: RPA0724: HoxN/HupN/NixA family cobalt transporter |
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Gene: BBta_3358: HoxN/HupN/NixA family cobalt transporter |
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HoxN/HupN/NixA family cobalt transporter |
| btuC1 |
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Gene: RPA0723: Vitamin B12 ABC transporter, permease component BtuC |
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Gene: Nwi_3048: Vitamin B12 ABC transporter, permease component BtuC |
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Vitamin B12 ABC transporter, permease component BtuC |
| btuD1 |
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Gene: RPA0722: Vitamin B12 ABC transporter, ATPase component BtuD |
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Gene: Nwi_3049: Vitamin B12 ABC transporter, ATPase component BtuD |
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Vitamin B12 ABC transporter, ATPase component BtuD |
| CRON 5. | ||||||||||||||||
| btuF1 |
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Rhodopseudomonas palustris CGA009 Site: position = -233 score = 122.93 sequence = TAACCCGAGGTTGTA... Gene: RPA2081: Vitamin B12 ABC transporter, B12-binding component BtuF |
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Vitamin B12 ABC transporter, B12-binding component BtuF |
| CRON 6. | ||||||||||||||||
| bluB |
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Sinorhizobium meliloti 1021 Site: position = -259 score = 92.02 sequence = TGGCCATATGCCGCC... Gene: SMc00166: Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family |
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Rhizobium sp. NGR234 Site: position = -257 score = 78.56 sequence = TGCCCATATGCGGCC... Gene: NGR_c16920: Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -279 score = 101.37 sequence = TGAAATAGATGCGCC... Gene: RL2681: Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family |
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Rhizobium etli CFN 42 Site: position = -229 score = 100.92 sequence = TGAAATAGATACCTC... Gene: RHE_CH02368: Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -310 score = 105.66 sequence = CCCATAGCTTCTCCG... Gene: Atu1654: Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family |
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Mesorhizobium loti MAFF303099 Site: position = -241 score = 92.07 sequence = AAGGTCGCCGCCACT... Gene: mll7468: Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family |
Gene: BMEII0246: Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family |
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Gene: RPA0711: Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family |
Gene: bll3254: Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family |
Gene: BBta_3155: Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family |
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Gene: AZC_4661: Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family |
Gene: Xaut_2810: Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family |
Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family |
| CRON 7. | ||||||||||||||||
| btuB |
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Rhodopseudomonas palustris CGA009 Site: position = -310 score = 127.61 sequence = CTTCTAATGGCGGTG... Gene: RPA4803: Outer membrane vitamin B12 receptor BtuB |
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Bradyrhizobium japonicum USDA 110 Site: position = -329 score = 143.59 sequence = TCGTAGATTGATCGG... Gene: bll4766: Outer membrane vitamin B12 receptor BtuB |
*2
Bradyrhizobium sp. BTAi1 Site: position = -327 score = 42.58 sequence = CCTACTGTGATGACG... Gene: BBta_6079: Outer membrane vitamin B12 receptor BtuB Site: position = -326 score = 134.66 sequence = CCTACTGTGATGGTG... Gene: BBta_6080: Outer membrane vitamin B12 receptor BtuB |
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Nitrobacter winogradskyi Nb-255 Site: position = -324 score = 132.62 sequence = CCAAACAGATCGGCG... Gene: Nwi_2219: Outer membrane vitamin B12 receptor BtuB |
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Outer membrane vitamin B12 receptor BtuB |
| CRON 8. | ||||||||||||||||
| nrdA |
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Mesorhizobium sp. BNC1 Site: position = -308 score = 134.1 sequence = ACTAAATATAGCCCA... Gene: Meso_2703: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Nitrobacter winogradskyi Nb-255 Site: position = -336 score = 117.97 sequence = TACTAAATATAGTGG... Gene: Nwi_2888: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
| nrdB |
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Gene: Meso_2702: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
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Gene: Nwi_2887: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
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Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
| CRON 9. | ||||||||||||||||
| achX |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -305 score = 132.66 sequence = CATTGGTTAGCCATC... Gene: Atu3826: acyl-CoA hydrolase |
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acyl-CoA hydrolase |
| CRON 10. | ||||||||||||||||
| btuB1 |
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Mesorhizobium sp. BNC1 Site: position = -318 score = 115.97 sequence = GTCTCGGCCGTGCCT... Gene: Meso_2063: Outer membrane cobalamin receptor protein |
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Brucella melitensis 16M Site: position = -447 score = 108.57 sequence = CGCAATTTTCAGGAG... Gene: BMEI0657: Outer membrane cobalamin receptor protein |
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Outer membrane cobalamin receptor protein |
| btuF1 |
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Gene: Meso_2064: Vitamin B12 ABC transporter, B12-binding component BtuF |
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Gene: BMEI0658: Vitamin B12 ABC transporter, B12-binding component BtuF |
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Vitamin B12 ABC transporter, B12-binding component BtuF |
| btuC1 |
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Gene: Meso_2065: Vitamin B12 ABC transporter, permease component BtuC |
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Gene: BMEI0659: Vitamin B12 ABC transporter, permease component BtuC |
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Vitamin B12 ABC transporter, permease component BtuC |
| btuD1 |
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Gene: Meso_2066: Vitamin B12 ABC transporter, ATPase component BtuD |
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Gene: BMEI0660: Vitamin B12 ABC transporter, ATPase component BtuD |
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Vitamin B12 ABC transporter, ATPase component BtuD |
| CRON 11. | ||||||||||||||||
| cfrX |
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Mesorhizobium loti MAFF303099 Site: position = -212 score = 131.28 sequence = TACGGTGGGTGCGTG... Gene: mlr8225: unknown protein |
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unknown protein |
| btuD |
Gene: SMb20058: Vitamin B12 ABC transporter, ATPase component BtuD |
Gene: NGR_b02530: Vitamin B12 ABC transporter, ATPase component BtuD |
Gene: RL3050: Vitamin B12 ABC transporter, ATPase component BtuD |
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Gene: Atu3394: Vitamin B12 ABC transporter, ATPase component BtuD |
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Gene: mlr8227: Vitamin B12 ABC transporter, ATPase component BtuD |
Gene: BMEII0537: Vitamin B12 ABC transporter, ATPase component BtuD |
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Vitamin B12 ABC transporter, ATPase component BtuD |
| btuF |
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Sinorhizobium meliloti 1021 Site: position = -397 score = 118.61 sequence = CATTAACTGGGACCG... Gene: SMb20056: Vitamin B12 ABC transporter, B12-binding component BtuF |
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Rhizobium sp. NGR234 Site: position = -422 score = 116.99 sequence = CTAAGCAAGCCGACG... Gene: NGR_b02510: Vitamin B12 ABC transporter, B12-binding component BtuF |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -435 score = 102.6 sequence = CGACGTAACTGGGCG... Gene: RL3052: Vitamin B12 ABC transporter, B12-binding component BtuF |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -394 score = 114.37 sequence = CCTTATGTGAGAAAG... Gene: Atu3396: Vitamin B12 ABC transporter, B12-binding component BtuF |
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Gene: mlr8228: Vitamin B12 ABC transporter, B12-binding component BtuF |
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Brucella melitensis 16M Site: position = -431 score = 126.09 sequence = CGTAATACCGTCATG... Gene: BMEII0535: Vitamin B12 ABC transporter, B12-binding component BtuF |
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Vitamin B12 ABC transporter, B12-binding component BtuF |
| btuC |
Gene: SMb20057: Vitamin B12 ABC transporter, permease component BtuC |
Gene: NGR_b02520: Vitamin B12 ABC transporter, permease component BtuC |
Gene: RL3051: Vitamin B12 ABC transporter, permease component BtuC |
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Gene: Atu3395: Vitamin B12 ABC transporter, permease component BtuC |
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Gene: mlr8229: Vitamin B12 ABC transporter, permease component BtuC |
Gene: BMEII0536: Vitamin B12 ABC transporter, permease component BtuC |
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Vitamin B12 ABC transporter, permease component BtuC |
| CRON 12. | ||||||||||||||||
| metE |
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Mesorhizobium sp. BNC1 Site: position = -348 score = 132.85 sequence = GCAAATCTGCACACG... Gene: Meso_2701: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
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Mesorhizobium loti MAFF303099 Site: position = -317 score = 130.9 sequence = GTGATTGTGCGCATG... Gene: mll6123: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
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Rhodopseudomonas palustris CGA009 Site: position = -303 score = 132.05 sequence = ATAGTGATCGCCGTC... Gene: RPA2397: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
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Bradyrhizobium japonicum USDA 110 Site: position = -302 score = 108.29 sequence = ATAATCCAAGTCGTC... Gene: blr2068: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
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Nitrobacter winogradskyi Nb-255 Site: position = -338 score = 131.95 sequence = ATAGGATGGGGGGTC... Gene: Nwi_2890: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
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5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
| CRON 13. | ||||||||||||||||
| hupE |
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Bradyrhizobium sp. BTAi1 Site: position = -310 score = 126.58 sequence = GTATCTAACAGGATG... Gene: BBta_3141: HupE-UreJ family cobalt transporter |
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HupE-UreJ family cobalt transporter |
| cfrX |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -304 score = 129.95 sequence = CTAAGGGTAAGGGAC... Gene: Atu2806: Predicted metal-binding protein |
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Mesorhizobium loti MAFF303099 Site: position = -414 score = 122.42 sequence = CTAAATCCGCTCCAG... Gene: mlr1374: Predicted metal-binding protein |
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Rhodopseudomonas palustris CGA009 Site: position = -217 score = 124.03 sequence = CTAGCGTGCCAAGCG... Gene: RPA0713: Predicted metal-binding protein |
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Bradyrhizobium japonicum USDA 110 Site: position = -314 score = 91.83 sequence = AATGGTGGCCCGGCG... Gene: blr3262: Predicted metal-binding protein |
Gene: BBta_3142: Predicted metal-binding protein |
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Azorhizobium caulinodans ORS 571 Site: position = -310 score = 94.89 sequence = TTAGTGGCCCCATCG... Gene: AZC_3933: Predicted metal-binding protein |
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Xanthobacter autotrophicus Py2 Site: position = -280 score = 112.98 sequence = CTTTAGTGCCCCTGT... Gene: Xaut_3288: Predicted metal-binding protein |
Predicted metal-binding protein |
| cobW |
Gene: SMc04304: CobW GTPase involved in cobalt insertion for B12 biosynthesis |
Gene: NGR_c18200: CobW GTPase involved in cobalt insertion for B12 biosynthesis |
Gene: RL2831: CobW GTPase involved in cobalt insertion for B12 biosynthesis |
Gene: RHE_CH02490: CobW GTPase involved in cobalt insertion for B12 biosynthesis |
Gene: Atu2805: CobW GTPase involved in cobalt insertion for B12 biosynthesis |
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Gene: mlr1375: CobW GTPase involved in cobalt insertion for B12 biosynthesis |
Gene: BMEI0694: CobW GTPase involved in cobalt insertion for B12 biosynthesis |
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Gene: RPA0715: CobW GTPase involved in cobalt insertion for B12 biosynthesis |
Gene: blr3261: CobW GTPase involved in cobalt insertion for B12 biosynthesis |
Gene: BBta_3143: CobW GTPase involved in cobalt insertion for B12 biosynthesis |
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Gene: AZC_3934: CobW GTPase involved in cobalt insertion for B12 biosynthesis |
Gene: Xaut_3287: CobW GTPase involved in cobalt insertion for B12 biosynthesis |
CobW GTPase involved in cobalt insertion for B12 biosynthesis |
| cobN |
Gene: SMc04303: CobN component of cobalt chelatase involved in B12 biosynthesis |
Gene: NGR_c18190: CobN component of cobalt chelatase involved in B12 biosynthesis |
Gene: RL2830: CobN component of cobalt chelatase involved in B12 biosynthesis |
Gene: RHE_CH02489: CobN component of cobalt chelatase involved in B12 biosynthesis |
Gene: Atu2804: CobN component of cobalt chelatase involved in B12 biosynthesis |
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Gene: mlr1377: CobN component of cobalt chelatase involved in B12 biosynthesis |
Gene: BMEI0695: CobN component of cobalt chelatase involved in B12 biosynthesis |
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Gene: RPA0716: CobN component of cobalt chelatase involved in B12 biosynthesis |
Gene: blr3263: CobN component of cobalt chelatase involved in B12 biosynthesis |
Gene: BBta_3144: CobN component of cobalt chelatase involved in B12 biosynthesis |
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Gene: AZC_3935: CobN component of cobalt chelatase involved in B12 biosynthesis |
Gene: Xaut_3286: CobN component of cobalt chelatase involved in B12 biosynthesis |
CobN component of cobalt chelatase involved in B12 biosynthesis |
| cobG |
Gene: SMc03193: Cobalamin biosynthesis protein CobG |
Gene: NGR_c29810: Cobalamin biosynthesis protein CobG |
Gene: pRL110631: Cobalamin biosynthesis protein CobG |
Gene: RHE_PE00455: Cobalamin biosynthesis protein CobG |
Gene: Atu2803: Cobalamin biosynthesis protein CobG |
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Gene: mlr1378: Cobalamin biosynthesis protein CobG |
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Gene: blr3264: Cobalamin biosynthesis protein CobG |
Gene: BBta_3145: Cobalamin biosynthesis protein CobG |
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Gene: AZC_3936: Cobalamin biosynthesis protein CobG |
Gene: Xaut_3285: Cobalamin biosynthesis protein CobG |
Cobalamin biosynthesis protein CobG |
| cbiC |
Gene: SMc03192: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
Gene: NGR_c29800: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
Gene: pRL110630: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
Gene: RHE_PE00454: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
Gene: Atu2802: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
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Gene: mlr1379: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
Gene: BMEI0714: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
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Gene: RPA2090: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
Gene: blr3265: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
Gene: BBta_3146: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
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Gene: AZC_3937: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
Gene: Xaut_3284: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
| cbiL |
Gene: SMc03191: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Gene: NGR_c29790: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Gene: pRL110629: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Gene: RHE_PE00453: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Gene: Atu2801: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
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Gene: mlr1380: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Gene: BMEI0713: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
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Gene: RPA2089: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Gene: blr3266: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Gene: BBta_3147: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
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Gene: AZC_3938: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Gene: Xaut_3283: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
| cbiH |
Gene: SMc03190: Cobalt-precorrin-3b C17-methyltransferase |
Gene: NGR_c29780: Cobalt-precorrin-3b C17-methyltransferase |
Gene: pRL110628: Cobalt-precorrin-3b C17-methyltransferase |
Gene: RHE_PE00452: Cobalt-precorrin-3b C17-methyltransferase |
Gene: Atu2800: Cobalt-precorrin-3b C17-methyltransferase |
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Gene: mlr1381: Cobalt-precorrin-3b C17-methyltransferase |
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Gene: RPA2088: Cobalt-precorrin-3b C17-methyltransferase |
Gene: blr3267: Cobalt-precorrin-3b C17-methyltransferase |
Gene: BBta_3148: Cobalt-precorrin-3b C17-methyltransferase |
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Gene: AZC_3939: Cobalt-precorrin-3b C17-methyltransferase |
Gene: Xaut_3282: Cobalt-precorrin-3b C17-methyltransferase |
Cobalt-precorrin-3b C17-methyltransferase |
| cobU |
Gene: SMc04305: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
Gene: NGR_c18210: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
Gene: RL2832: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
Gene: RHE_CH02491: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
Gene: Atu1542: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
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Gene: mll1308: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
Gene: BMEI0693: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
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Gene: RPA0714: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
Gene: bll3256: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
Gene: BBta_3140: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
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Gene: AZC_2256: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
Gene: Xaut_3776: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
| btuR |
Gene: SMc04302: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
Gene: NGR_c18180: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
Gene: RL2829: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
Gene: RHE_CH02488: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
Gene: Atu2807: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
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Gene: mll1306: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
Gene: BMEI0696: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
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Gene: RPA0717: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
Gene: bll3260: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
Gene: BBta_3139: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
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Gene: AZC_2257: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
Gene: Xaut_3777: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
| cbiP |
Gene: SMc04309: Cobyric acid synthase |
Gene: NGR_c18240: Cobyric acid synthase |
Gene: RL2836: Cobyric acid synthase |
Gene: RHE_CH02494: Cobyric acid synthase |
Gene: Atu2808: Cobyric acid synthase |
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Gene: mll1198: Cobyric acid synthase |
Gene: BMEI0690: Cobyric acid synthase |
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2
Rhodopseudomonas palustris CGA009 Gene: RPA0718: Cobyric acid synthase Gene: RPA2096: Cobyric acid synthase |
Gene: bll3259: Cobyric acid synthase |
2
Bradyrhizobium sp. BTAi1 Gene: BBta_6600: Cobyric acid synthase Gene: BBta_3138: Cobyric acid synthase |
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Gene: AZC_2258: Cobyric acid synthase |
Gene: Xaut_3778: Cobyric acid synthase |
Cobyric acid synthase |
| cbtB |
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*
Rhizobium sp. NGR234 Site: position = -314 score = 56.0 sequence = ATCATCGCTGATCGG... Gene: NGR_c21910: Putative cobalt transporter, subunit CbtB |
Gene: pRL110122: Putative cobalt transporter, subunit CbtB |
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*
Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -388 score = 122.31 sequence = GATAACATGTCCGTG... Gene: Atu0883: Putative cobalt transporter, subunit CbtB |
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*
Mesorhizobium loti MAFF303099 Site: position = -217 score = 120.74 sequence = CTATAGTCATGCAGT... Gene: msl1310: Putative cobalt transporter, subunit CbtB |
*
Brucella melitensis 16M Site: position = -299 score = 80.33 sequence = TGTCAAACCATGTGA... Gene: BMEI0691: Putative cobalt transporter, subunit CbtB |
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*
Xanthobacter autotrophicus Py2 Site: position = -243 score = 121.79 sequence = ATAGTCGTCCCGTCG... Gene: Xaut_3774: Putative cobalt transporter, subunit CbtB |
Putative cobalt transporter, subunit CbtB |
| cbtA |
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Gene: NGR_c21920: Predicted cobalt transporter CbtA |
Gene: pRL110121: Predicted cobalt transporter CbtA |
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Gene: Atu0884: Predicted cobalt transporter CbtA |
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Gene: mll1309: Predicted cobalt transporter CbtA |
Gene: BMEI0692: Predicted cobalt transporter CbtA |
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Gene: Xaut_3775: Predicted cobalt transporter CbtA |
Predicted cobalt transporter CbtA |
| RPA2091 |
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*
Rhodopseudomonas palustris CGA009 Site: position = -315 score = 119.3 sequence = CCAAACATCGCGCGC... Gene: RPA2091: Predicted non-orthologous displacement of CobG |
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Predicted non-orthologous displacement of CobG |
| cobT |
Gene: SMc04214: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
Gene: NGR_c17340: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
Gene: RL2781: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
Gene: RHE_CH02443: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
Gene: Atu1890: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
|
2
Mesorhizobium loti MAFF303099 Gene: mlr1389: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) Gene: mll0563: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
Gene: BMEI1099: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
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*
Rhodopseudomonas palustris CGA009 Site: position = -418 score = 111.5 sequence = GTGGTGCCGCTCGCT... Gene: RPA2094: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
Gene: blr3276: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
Gene: BBta_3133: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
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Gene: AZC_3909: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
Gene: Xaut_3321: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
| cobS |
Gene: SMc04215: Cobalamin synthase |
Gene: NGR_c17330: Cobalamin synthase |
Gene: RL2781A: Cobalamin synthase |
Gene: RHE_CH02444: Cobalamin synthase |
Gene: Atu1891: Cobalamin synthase |
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Gene: mlr1388: Cobalamin synthase |
Gene: BMEI1100: Cobalamin synthase |
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2
Rhodopseudomonas palustris CGA009 Gene: RPA1257: Cobalamin synthase Gene: RPA2095: Cobalamin synthase |
Gene: bll3255: Cobalamin synthase |
Gene: BBta_3135: Cobalamin synthase |
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Gene: AZC_2896: Cobalamin synthase |
Gene: Xaut_4260: Cobalamin synthase |
Cobalamin synthase |
| cobF |
Gene: SMc03194: Precorrin-6A synthase (EC 2.1.1.152) |
Gene: NGR_c29820: Precorrin-6A synthase (EC 2.1.1.152) |
Gene: pRL110632: Precorrin-6A synthase (EC 2.1.1.152) |
Gene: RHE_PE00456: Precorrin-6A synthase (EC 2.1.1.152) |
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Gene: mlr1461: Precorrin-6A synthase (EC 2.1.1.152) |
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Gene: RPA2097: Precorrin-6A synthase (EC 2.1.1.152) |
Gene: blr3275: Precorrin-6A synthase (EC 2.1.1.152) |
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Precorrin-6A synthase (EC 2.1.1.152) |
| cbtC |
*
Sinorhizobium meliloti 1021 Site: position = -261 score = 125.47 sequence = ATACCAGATCATGTG... Gene: SM_b20556: Predicted cobalt transporter CbtC |
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*
Bradyrhizobium japonicum USDA 110 Site: position = -256 score = 99.52 sequence = GCACACAGGACGGGC... Gene: blr3274: Predicted cobalt transporter CbtC |
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*2
Azorhizobium caulinodans ORS 571 Gene: AZC_3795: Predicted cobalt transporter CbtC Site: position = -316 score = 106.86 sequence = GCTAAGGTGTCATCG... Gene: AZC_0148: Predicted cobalt transporter CbtC |
*
Xanthobacter autotrophicus Py2 Site: position = -264 score = 89.88 sequence = CTGCTGCAAAGGCAC... Gene: Xaut_0420: Predicted cobalt transporter CbtC |
Predicted cobalt transporter CbtC |
| Xaut_0421 |
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Gene: Xaut_0421: hypothetical protein |
hypothetical protein |
| btuB |
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Gene: BMEII0297: Cobalamin specific TonB-dependent receptor |
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Gene: RPA1823: Cobalamin specific TonB-dependent receptor |
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Gene: AZC_1341: Cobalamin specific TonB-dependent receptor |
Gene: Xaut_0422: Cobalamin specific TonB-dependent receptor |
Cobalamin specific TonB-dependent receptor |
| CRON 14. | ||||||||||||||||
| nrdH |
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*
Rhizobium leguminosarum bv. viciae 3841 Site: position = -507 score = 111.2 sequence = TACCATATCTAGTGT... Gene: RL4261: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
*
Rhizobium etli CFN 42 Site: position = -485 score = 116.86 sequence = TACTATATCTAGTGT... Gene: RHE_CH03718: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
*
Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -531 score = 126.6 sequence = CTATATGTGGTGTTC... Gene: Atu0068: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
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*
Brucella melitensis 16M Site: position = -554 score = 120.95 sequence = TACCATATCTTGTGT... Gene: BMEII0932: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
Gene: BQ01800: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
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Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
| nrdI |
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Gene: RL4260: Ribonucleotide reduction protein NrdI |
Gene: RHE_CH03717: Ribonucleotide reduction protein NrdI |
Gene: Atu0069: Ribonucleotide reduction protein NrdI |
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Gene: BMEII0931: Ribonucleotide reduction protein NrdI |
Gene: BQ01810: Ribonucleotide reduction protein NrdI |
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Ribonucleotide reduction protein NrdI |
| nrdE |
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Gene: RL4259: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Gene: RHE_CH03716: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Gene: Atu0070: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
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Gene: BMEII0930: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Gene: BQ01820: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
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Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
| nrdF |
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Gene: RL4258: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
Gene: RHE_CH03715: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Atu0071: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
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Gene: BMEII0929: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
Gene: BQ01830: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
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Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |