Regulon of PaaR in Rhodopseudomonas palustris CGA009
| Regulator type: | Transcription factor |
| TF locus tag: | RPA3769 |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Phenylacetic acid degradation |
| Effector: | Phenylacetyl-CoA |
| Regulog: | PaaR - Rhizobiales |
| Statistics of regulated genes: | |
| - Genes | 15 |
| - Operons | 5 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhizobiales
- By trascription factor - PaaR
- By TF family - TetR
- By effector - Phenylacetyl-CoA
- By pathway - Phenylacetic acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -108
Score: 5.7 Sequence: ATTGAACGATCGGTCAGTCAAT
Locus tag: RPA1725
Name: paaZ Funciton: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
Locus tag: RPA1726
Name: blr2898 Funciton: putative zinc binding dehydrogenase |
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paaZ
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Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
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blr2898
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putative zinc binding dehydrogenase
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Position: -91
Score: 5.9 Sequence: ATTGACCAATTGGACGGTCAAT
Locus tag: RPA3769
Name: paaR Funciton: Transcriptional regulator of phenylacetic acid degradation, TetR family |
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paaR
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Transcriptional regulator of phenylacetic acid degradation, TetR family
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Position: -144
Score: 6.3 Sequence: ATTGACCGACCGTTCGGTTAAG
Locus tag: RPA4019
Name: livK Funciton: Putative branched-chain amino acid ABC transporter, substrate-binding component
Locus tag: RPA4020
Name: livH Funciton: Putative branched-chain amino acid ABC transporter, permease component
Locus tag: RPA4021
Name: livF Funciton: Putative branched-chain amino acid ABC transporter, permease component 2
Locus tag: RPA4022
Name: livM1 Funciton: utative branched-chain amino acid ABC transporter, ATPase component 1
Locus tag: RPA4023
Name: livM2 Funciton: utative branched-chain amino acid ABC transporter, ATPase component 2 |
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livK
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Putative branched-chain amino acid ABC transporter, substrate-binding component
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livH
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Putative branched-chain amino acid ABC transporter, permease component
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livF
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Putative branched-chain amino acid ABC transporter, permease component 2
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livM1
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utative branched-chain amino acid ABC transporter, ATPase component 1
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livM2
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utative branched-chain amino acid ABC transporter, ATPase component 2
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Position: -138
Score: 5.7 Sequence: ATTGACTGACCGATCGTTCAAT
Locus tag: RPA1724
Name: paaY Funciton: thioesterase superfamily protein
Locus tag: RPA1723
Name: paaK Funciton: Phenylacetate-coenzyme A ligase (EC 6.2.1.30) |
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paaY
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thioesterase superfamily protein
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paaK
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Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
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Position: -53
Score: 5.9 Sequence: ATTGACCGTCCAATTGGTCAAT
Locus tag: RPA3768
Name: paaA Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: RPA3767
Name: paaB Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: RPA3766
Name: paaC Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: RPA3765
Name: paaD Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: RPA3764
Name: paaE Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-) |
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paaA
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Phenylacetate-CoA oxygenase, PaaA subunit
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paaB
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Phenylacetate-CoA oxygenase, PaaB subunit
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paaC
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Phenylacetate-CoA oxygenase, PaaC subunit
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paaD
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Phenylacetate-CoA oxygenase, PaaD subunit
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paaE
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Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |