Regulons of Bradyrhizobium sp. BTAi1
|
Allows to visualize regulome content in the context of metabolic pathways |
|
| Type |
Regulator |
Effector |
Pathway |
Operons |
Sites |
| TF |
BBta_7471 |
|
|
1 |
1 |
| TF |
BioR |
|
Biotin biosynthesis |
2 |
2 |
| TF |
Bll2166 |
|
|
2 |
2 |
| TF |
Bll4368 |
|
Glycolate utilization; Lactate utilization |
4 |
5 |
| TF |
CadR-PbrR |
Lead ion, (Pb2+); Cadmium, ion (Cd2+) |
Lead resistance; Cadmium resistance |
2 |
1 |
| TF |
FixJ |
Oxygen |
Oxidative stress response |
6 |
2 |
| TF |
FnrN/FixK/AadR |
Oxygen |
Oxidative stress response; Nitrogen fixation |
34 |
22 |
| TF |
GulR |
|
Glucarate utilization; Galactarate utilization |
5 |
5 |
| TF |
HrcA |
Heat shock |
Heat shock response |
4 |
3 |
| TF |
HutC |
cis-Urocanic acid |
Histidine utilization |
2 |
2 |
| TF |
IdnR |
L-idonate |
Idonate utilization |
2 |
2 |
| TF |
Irr |
Heme |
Iron homeostasis |
20 |
6 |
| TF |
LexA |
DNA damage |
SOS response |
22 |
11 |
| TF |
Mll1683 |
|
Sugar utilization |
3 |
3 |
| TF |
MntR |
Manganese ion, (Mn2+) |
Manganese homeostasis |
3 |
2 |
| TF |
ModE |
Molybdate |
Molybdenum homeostasis |
1 |
1 |
| TF |
Mur |
Iron ion, (Fe2+) |
Manganese homeostasis |
3 |
3 |
| TF |
NadQ |
|
NAD biosynthesis |
2 |
2 |
| TF |
NifA |
|
Nitrogen fixation |
20 |
19 |
| TF |
NikR |
Nickel ion, (Ni2+) |
Nickel homeostasis |
5 |
5 |
| TF |
NmlR |
Diamide |
Carbonyl stress response |
1 |
1 |
| TF |
NnrR |
Nitric oxide |
Denitrification |
12 |
11 |
| TF |
NrdR |
Deoxyribonucleotides |
Deoxyribonucleotide biosynthesis |
1 |
2 |
| TF |
NrtR |
Adenosine diphosphate ribose |
NAD biosynthesis |
2 |
4 |
| TF |
NtrC |
Phosphorylated NtrB, signal histidine kinase |
Nitrogen assimilation |
10 |
10 |
| TF |
PdxQ3 |
|
Pyridoxine/pyridoxal homeostasis |
1 |
1 |
| TF |
PdxW |
Pyridoxal-5-phosphate |
Pyridoxine/pyridoxal homeostasis |
1 |
1 |
| TF |
PhnF |
|
Phosphonate utilization |
4 |
2 |
| TF |
PsrA |
Oleate |
Fatty acid degradation |
2 |
4 |
| TF |
RutR |
Uracil |
Pyrimidine utilization |
5 |
3 |
| TF |
SMb20039 |
|
|
1 |
1 |
| TF |
VanR |
Vanillate |
Vanillate utilization |
1 |
2 |
| TF |
XylR |
Xylose |
Xylose utilization |
1 |
1 |
| TF |
Zur |
Zinc ion, (Zn2+) |
Zinc homeostasis |
5 |
4 |
| TF |
blr3394 |
|
Sugar utilization |
1 |
1 |
| RNA |
Cobalamin |
Adenosylcobalamin |
Cobalamin biosynthesis |
9 |
3 |
| RNA |
FMN |
Flavin mononucleotide |
Riboflavin biosynthesis |
1 |
1 |
| RNA |
Glycine |
Glycine |
Glycine metabolism |
2 |
2 |
| RNA |
SAM_alpha |
S-adenosylmethionine |
Methionine biosynthesis |
2 |
2 |
| RNA |
TPP |
Thiamine pyrophosphate |
Thiamine biosynthesis |
3 |
1 |
| RNA |
serC |
|
Serine biosynthesis |
1 |
1 |
| RNA |
ykkC-yxkD |
|
Multidrug resistance |
3 |
1 |
| RNA |
yybP-ykoY |
|
|
1 |
1 |
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