Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LexA in Bradyrhizobium sp. BTAi1

Properties
Regulator type: Transcription factor
TF locus tag: BBta_4496
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Regulog: LexA - Rhizobiales
Statistics of regulated genes:
- Genes 15
- Operons 10
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 212 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -124
Score: 5.2
Sequence: GTTCATGATTTGTTT
Locus tag: BBta_4496
Name: lexA
Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
BBta_4496
lexA
SOS-response repressor and protease LexA (EC 3.4.21.88)
Position: -108
Score: 4.8
Sequence: GTTCTTCCTACGTTC
Locus tag: BBta_4379
Name: uvrA
Funciton: Excinuclease ABC subunit A
BBta_4379
uvrA
Excinuclease ABC subunit A
Position: -98
Score: 4.9
Sequence: GTTCTTGTAATGTTC
Locus tag: BBta_2341
Name: PF04055
Funciton: Radical SAM domain protein
BBta_2341
PF04055
Radical SAM domain protein
Position: -107
Score: 1.6
Sequence: GAACATATTGCGAAC
Position: -89
Score: 1
Sequence: GAACAGATCGGGTAC
Locus tag: BBta_5453
Name: recA
Funciton: Recombinase A
BBta_5453
recA
Recombinase A
Position: -57
Score: 4.9
Sequence: GTTCTTGAAATGTTC
Locus tag: BBta_1732
Name: rna
Funciton: Ribonuclease T2
BBta_1732
rna
Ribonuclease T2
Position: -96
Score: 1.7
Sequence: GAACGTATCATGAAC
Locus tag: BBta_2985
Name: imuA
Funciton: Predicted RecA/RadA recombinase
Locus tag: BBta_2986
Name: imuB
Funciton: DNA polymerase-like protein PA0670
Locus tag: BBta_2987
Name: dnaE2
Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7)
BBta_2985
imuA
Predicted RecA/RadA recombinase
BBta_2986
imuB
DNA polymerase-like protein PA0670
BBta_2987
dnaE2
DNA polymerase III alpha subunit (EC 2.7.7.7)
Position: -47
Score: 4.6
Sequence: GTTCCGTTTATGTTT
Locus tag: BBta_6909
Name: ruvC
Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Locus tag: BBta_6908
Name: ruvA
Funciton: Holliday junction DNA helicase RuvA
Locus tag: BBta_6907
Name: cdd
Funciton: Cytidine deaminase (EC 3.5.4.5)
Locus tag: BBta_6906
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
BBta_6909
ruvC
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
BBta_6908
ruvA
Holliday junction DNA helicase RuvA
BBta_6907
cdd
Cytidine deaminase (EC 3.5.4.5)
BBta_6906
ruvB
Holliday junction DNA helicase RuvB
Position: -62
Score: 5.1
Sequence: GTTCTTGCATTGTTC
Locus tag: BBta_0136
Name: yifB
Funciton: Conserved hypothetical protein
BBta_0136
yifB
Conserved hypothetical protein
Position: -47
Score: 5.1
Sequence: GTTCTCTATTCGTTC
Locus tag: BBta_7338
Name: rmuC
Funciton: DNA recombination protein RmuC
BBta_7338
rmuC
DNA recombination protein RmuC
Position: -174
Score: 1.2
Sequence: GAACAAAACTGGAAC
Locus tag: BBta_4373
Name: ssb
Funciton: Single-stranded DNA-binding protein
BBta_4373
ssb
Single-stranded DNA-binding protein
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise