Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of FnrN/FixK/AadR in Bradyrhizobium sp. BTAi1

Properties
Regulator type: Transcription factor
TF locus tag: BBta_p0192, BBta_2786, BBta_7770, BBta_7767, BBta_7766, BBta_5746
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Oxidative stress response; Nitrogen fixation
Effector: Oxygen
Regulog: FnrN/FixK/AadR - Rhizobiales
Statistics of regulated genes:
- Genes 44
- Operons 20
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 192 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -103
Score: 5.2
Sequence: GCCTTGATCCACGTCAACGC
Locus tag: BBta_1864
Name: napE
Funciton: Periplasmic nitrate reductase component NapE
Locus tag: BBta_1863
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: BBta_1862
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: BBta_1861
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: BBta_1860
Name: napC
Funciton: Cytochrome c-type protein NapC
BBta_1864
napE
Periplasmic nitrate reductase component NapE
BBta_1863
napD
Periplasmic nitrate reductase component NapD
BBta_1862
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
BBta_1861
napB
Nitrate reductase cytochrome c550-type subunit
BBta_1860
napC
Cytochrome c-type protein NapC
Position: -82
Score: 5.2
Sequence: CATTTGATTTGAATCAATCG
Locus tag: BBta_5746
Name: aadR
Funciton: Nitrogen fixation and oxygen response transcriptional regulator AadR, Crp family
BBta_5746
aadR
Nitrogen fixation and oxygen response transcriptional regulator AadR, Crp family
Position: -76
Score: 4.4
Sequence: CGCTTGATCTTCCGCAAGTC
Locus tag: BBta_6481
Name: ppsA
Funciton: Phosphoenolpyruvate synthase (EC 2.7.9.2)
BBta_6481
ppsA
Phosphoenolpyruvate synthase (EC 2.7.9.2)
Position: -75
Score: 4.8
Sequence: ACCTTGACAGACATCAAGCC
Locus tag: BBta_5755
Name: adhP
Funciton: Predicted alcohol dehydrogenase (EC 1.1.1.1), zinc containing
Locus tag: BBta_5756
Name: COG2187
Funciton: Predicted kinase
BBta_5755
adhP
Predicted alcohol dehydrogenase (EC 1.1.1.1), zinc containing
BBta_5756
COG2187
Predicted kinase
Position: -100
Score: 5.2
Sequence: AACTTGATTTCGATCAATTC
Locus tag: BBta_2792
Name: ccoN
Funciton: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
Locus tag: BBta_2793
Name: ccoO
Funciton: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
Locus tag: BBta_2794
Name: ccoP
Funciton: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
BBta_2792
ccoN
Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
BBta_2793
ccoO
Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
BBta_2794
ccoP
Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
Position: -86
Score: 5.1
Sequence: CAATTGAGCTGGATCAACTG
Locus tag: BBta_2795
Name: ccoG
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation
Locus tag: BBta_2796
Name: ccoH
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoH
Locus tag: BBta_2797
Name: ccoI
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
Locus tag: BBta_2798
Name: ccoS
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion
BBta_2795
ccoG
Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation
BBta_2796
ccoH
Type cbb3 cytochrome oxidase biogenesis protein CcoH
BBta_2797
ccoI
Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
BBta_2798
ccoS
Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion
Position: -108
Score: 5.4
Sequence: CGATTGATCGAGATCAAATC
Locus tag: BBta_0946
Name: ompW
Funciton: Outer membrane protein W precursor
BBta_0946
ompW
Outer membrane protein W precursor
Position: -70
Score: 4.6
Sequence: CTTTTGATACCGATCAAGAC
Locus tag: BBta_5308
Name: adhA
Funciton: Alcohol dehydrogenase (EC 1.1.1.1), zinc containing
BBta_5308
adhA
Alcohol dehydrogenase (EC 1.1.1.1), zinc containing
Position: -182
Score: 4.7
Sequence: TGTTTGATCCAGCGCAACGT
Locus tag: BBta_6007
Name: nosR
Funciton: Nitrous oxide reductase maturation protein NosR
Locus tag: BBta_6008
Name: nosZ
Funciton: Nitrous-oxide reductase (EC 1.7.99.6)
Locus tag: BBta_6009
Name: nosD
Funciton: Nitrous oxide reductase maturation protein NosD
Locus tag: BBta_6010
Name: nosF
Funciton: Nitrous oxide reductase maturation protein NosF (ATPase)
Locus tag: BBta_6011
Name: nosY
Funciton: Nitrous oxide reductase maturation transmembrane protein NosY
Locus tag: BBta_6012
Name: nosL
Funciton: Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL
Locus tag: BBta_6013
Name: nosX
Funciton: Nitrous oxide reductase maturation periplasmic protein NosX
BBta_6007
nosR
Nitrous oxide reductase maturation protein NosR
BBta_6008
nosZ
Nitrous-oxide reductase (EC 1.7.99.6)
BBta_6009
nosD
Nitrous oxide reductase maturation protein NosD
BBta_6010
nosF
Nitrous oxide reductase maturation protein NosF (ATPase)
BBta_6011
nosY
Nitrous oxide reductase maturation transmembrane protein NosY
BBta_6012
nosL
Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL
BBta_6013
nosX
Nitrous oxide reductase maturation periplasmic protein NosX
Position: -76
Score: 5.3
Sequence: CGTTTGAGCCAGATCAATTT
Locus tag: BBta_6404
Name: bchE
Funciton: Mg-protoporphyrin IX monomethyl ester oxidative cyclase (EC 1.14.13.81)
BBta_6404
bchE
Mg-protoporphyrin IX monomethyl ester oxidative cyclase (EC 1.14.13.81)
Position: -161
Score: 4.1
Sequence: ACTTTGAGGAAGCGCAAAGT
Position: -88
Score: 4.7
Sequence: GCTTTGAGCAGGCTCAAGGC
Locus tag: BBta_6824
Name: hemN
Funciton: Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22)
BBta_6824
hemN
Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22)
Position: -77
Score: 5.2
Sequence: CGATTGATTCAAATCAAATG
Locus tag: BBta_5747
Name: blr6062
Funciton: Putative cytochrome C6 precursor
BBta_5747
blr6062
Putative cytochrome C6 precursor
Position: -133
Score: 4.7
Sequence: CCATTGACATAGCTCAACCG
Locus tag: BBta_3690
Name: RPA1090
Funciton: Predicted transcriptional regulator, Crp family
BBta_3690
RPA1090
Predicted transcriptional regulator, Crp family
Position: -84
Score: 5.4
Sequence: GGATTGAGCTAGATCAAGCG
Locus tag: BBta_2787
Name: bll2758
Funciton: Predicted transcriptional regulator, two-component, OmpR family
BBta_2787
bll2758
Predicted transcriptional regulator, two-component, OmpR family
Position: -52
Score: 5.8
Sequence: CCTTTGATCCAGATCAAGCG
Locus tag: BBta_2733
Name: mhpA
Funciton: Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8)
Locus tag: BBta_2734
Name: mhpB
Funciton: Protocatechuate 4,5-dioxygenase beta chain (EC 1.13.11.8)
BBta_2733
mhpA
Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8)
BBta_2734
mhpB
Protocatechuate 4,5-dioxygenase beta chain (EC 1.13.11.8)
Position: -109
Score: 5.3
Sequence: GAATTGACCCAGGTCAAAGG
Position: -75
Score: 5.1
Sequence: TCATTGATGCAGCTCAAGGC
Locus tag: BBta_5758
Name: null
Funciton: hypothetical protein
Locus tag: BBta_5757
Name: null
Funciton: Polyhydroxyalkanoic acid synthase
BBta_5758
hypothetical protein
BBta_5757
Polyhydroxyalkanoic acid synthase
Position: -84
Score: 3.9
Sequence: TGCTTGTTGCAGCACAAACA
Locus tag: BBta_6826
Name: nirK
Funciton: Copper-containing nitrite reductase (EC 1.7.2.1)
Locus tag: BBta_6827
Name: nirV
Funciton: Nitrite reductase accessory protein NirV
BBta_6826
nirK
Copper-containing nitrite reductase (EC 1.7.2.1)
BBta_6827
nirV
Nitrite reductase accessory protein NirV
Position: -153
Score: 5.2
Sequence: CATTTGATCGTGATCAATCT
Locus tag: BBta_3527
Name: hspC2
Funciton: Small heat shock protein
BBta_3527
hspC2
Small heat shock protein
Position: -181
Score: 4.2
Sequence: GCATTGCGATAGATCAAGAA
Locus tag: BBta_0828
Name: ctaC
Funciton: Cytochrome c oxidase polypeptide II (EC 1.9.3.1)
Locus tag: BBta_0829
Name: ctaD
Funciton: Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Locus tag: BBta_0830
Name: ctaB
Funciton: Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB
Locus tag: BBta_0831
Name: ctaX
Funciton: Hypothetical protein in cta gene cluster
Locus tag: BBta_0832
Name: ctaG
Funciton: Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1
Locus tag: BBta_0833
Name: ctaE
Funciton: Cytochrome c oxidase polypeptide III (EC 1.9.3.1)
BBta_0828
ctaC
Cytochrome c oxidase polypeptide II (EC 1.9.3.1)
BBta_0829
ctaD
Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
BBta_0830
ctaB
Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB
BBta_0831
ctaX
Hypothetical protein in cta gene cluster
BBta_0832
ctaG
Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1
BBta_0833
ctaE
Cytochrome c oxidase polypeptide III (EC 1.9.3.1)
Position: -90
Score: 4.9
Sequence: CGGTTGTTCCAGATCAATGA
Locus tag: BBta_3726
Name: bsr3073
Funciton: Conserved hypothetical protein
BBta_3726
bsr3073
Conserved hypothetical protein
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