Regulog SmoR - Rhodobacterales

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:
Biological process:	Sorbitol utilization; Mannitol utilization
Effector:	Sorbitol
Phylum:	Proteobacteria/Alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 15 sites [see more]

Member of regulog collections

By taxonomy - Rhodobacterales
By TF family - LacI
By effector - Sorbitol
By pathway - Sorbitol utilization
By pathway - Mannitol utilization

Statistics of regulated genes
Genome	Genes	Operons
Hyphomonas neptunium ATCC 15444
Jannaschia sp. CCS1	7	2
Loktanella vestfoldensis SKA53	2	2
Oceanicaulis alexandrii HTCC2633
Oceanicola batsensis HTCC2597	9	2
Oceanicola granulosus HTCC2516	2	2
Paracoccus denitrificans PD1222	12	3
Rhodobacter sphaeroides 2.4.1
Rhodobacterales bacterium HTCC2654
Roseobacter sp. MED193
Roseovarius nubinhibens ISM
Roseovarius sp. 217
Silicibacter TM1040	7	2
Silicibacter pomeroyi DSS-3
Sulfitobacter sp. EE-36	7	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
smoR	Hyphomonas neptunium ATCC 15444	* Jannaschia sp. CCS1 Site: position = -85 score = 5.69617 sequence = ATCTTTACGCGCGAAAAGAT Gene: Jann_2901: Transcriptional regulator for sorbitol and mannitol utilization, LacI family	* Loktanella vestfoldensis SKA53 Site: position = -77 score = 5.17021 sequence = CTGTTAACGCGCGTAAATTT Gene: SKA53_11074: Transcriptional regulator for sorbitol and mannitol utilization, LacI family	Oceanicaulis alexandrii HTCC2633	* Oceanicola batsensis HTCC2597 Site: position = -102 score = 5.12599 sequence = AACTTGTCACGCGTAAAATC Gene: OB2597_06120: Transcriptional regulator for sorbitol and mannitol utilization, LacI family	* Oceanicola granulosus HTCC2516 Site: position = -103 score = 4.86474 sequence = ATGTTGACGCACGTCAAAAA Gene: OG2516_17895: Transcriptional regulator for sorbitol and mannitol utilization, LacI family	* Paracoccus denitrificans PD1222 Site: position = -54 score = 4.61299 sequence = GTCTTTACGCGAGACAATAT Gene: Pden_4846: Transcriptional regulator for sorbitol and mannitol utilization, LacI family	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217	* Silicibacter TM1040 Site: position = -93 score = 5.06733 sequence = AAGTTTGCGCCCGCAAAGTT Gene: TM1040_0432: Transcriptional regulator for sorbitol and mannitol utilization, LacI family	Silicibacter pomeroyi DSS-3	* Sulfitobacter sp. EE-36 Site: position = -89 score = 4.25971 sequence = TATTTACCGCGCGACAAGTA Gene: EE36_14657: Transcriptional regulator for sorbitol and mannitol utilization, LacI family	Transcriptional regulator for sorbitol and mannitol utilization, LacI family

CRON 2.
smoE	Hyphomonas neptunium ATCC 15444	* Jannaschia sp. CCS1 Site: position = -89 score = 6.40309 sequence = AAATTTACGCGCGTAAAGTT Gene: Jann_2902: Various polyols ABC transporter, substrate-binding protein	* Loktanella vestfoldensis SKA53 Site: position = -93 score = 5.27513 sequence = TATTTTACGCGCGTAAAATC Gene: SKA53_11098: Various polyols ABC transporter, substrate-binding protein	Oceanicaulis alexandrii HTCC2633	2 Oceanicola batsensis HTCC2597* Site: position = -104 score = 5.54523 sequence = TTCTTTACGCGCGTCAAATT Gene: OB2597_06125: Various polyols ABC transporter, substrate-binding protein Gene: OB2597_06130: Various polyols ABC transporter, substrate-binding protein	2 Oceanicola granulosus HTCC2516* Site: position = -41 score = 4.34585 sequence = AACTGAACACGCGTAAAAAC Gene: OG2516_17900: Various polyols ABC transporter, substrate-binding protein Gene: OG2516_12599: Various polyols ABC transporter, substrate-binding protein	* Paracoccus denitrificans PD1222 Site: position = -87 score = 5.76722 sequence = AATTTTTCGCGCGTAAAAAT Gene: Pden_4845: Various polyols ABC transporter, substrate-binding protein	Rhodobacter sphaeroides 2.4.1 Gene: RSP_0091: Various polyols ABC transporter, substrate-binding protein	Rhodobacterales bacterium HTCC2654 Gene: RB2654_13870: Various polyols ABC transporter, substrate-binding protein	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217	* Silicibacter TM1040 Site: position = -89 score = 5.80599 sequence = TTCTTTACGCGCGTAAATTT Gene: TM1040_0431: Various polyols ABC transporter, substrate-binding protein	Silicibacter pomeroyi DSS-3	* Sulfitobacter sp. EE-36 Site: position = -85 score = 5.76423 sequence = AACTAGACGCGCGTAAAATT Gene: EE36_14652: Various polyols ABC transporter, substrate-binding protein	Various polyols ABC transporter, substrate-binding protein
smoF	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1 Gene: Jann_2903: Various polyols ABC transporter, inner membrane component 1	Loktanella vestfoldensis SKA53 Gene: SKA53_11108: Various polyols ABC transporter, inner membrane component 1	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597 Gene: OB2597_06135: Various polyols ABC transporter, inner membrane component 1	Oceanicola granulosus HTCC2516 Gene: OG2516_12604: Various polyols ABC transporter, inner membrane component 1	Paracoccus denitrificans PD1222 Gene: Pden_4844: Various polyols ABC transporter, inner membrane component 1	Rhodobacter sphaeroides 2.4.1 Gene: RSP_0092: Various polyols ABC transporter, inner membrane component 1	Rhodobacterales bacterium HTCC2654 Gene: RB2654_13865: Various polyols ABC transporter, inner membrane component 1	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040 Gene: TM1040_0430: Various polyols ABC transporter, inner membrane component 1	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36 Gene: EE36_14647: Various polyols ABC transporter, inner membrane component 1	Various polyols ABC transporter, inner membrane component 1
smoG	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1 Gene: Jann_2904: ABC sorbitol/mannitol transporter, inner membrane component 2	Loktanella vestfoldensis SKA53 Gene: SKA53_11113: ABC sorbitol/mannitol transporter, inner membrane component 2	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597 Gene: OB2597_06140: ABC sorbitol/mannitol transporter, inner membrane component 2	Oceanicola granulosus HTCC2516 Gene: OG2516_12609: ABC sorbitol/mannitol transporter, inner membrane component 2	Paracoccus denitrificans PD1222 Gene: Pden_4843: ABC sorbitol/mannitol transporter, inner membrane component 2	Rhodobacter sphaeroides 2.4.1 Gene: RSP_0093: ABC sorbitol/mannitol transporter, inner membrane component 2	Rhodobacterales bacterium HTCC2654 Gene: RB2654_13860: ABC sorbitol/mannitol transporter, inner membrane component 2	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040 Gene: TM1040_0429: ABC sorbitol/mannitol transporter, inner membrane component 2	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36 Gene: EE36_14642: ABC sorbitol/mannitol transporter, inner membrane component 2	ABC sorbitol/mannitol transporter, inner membrane component 2
smoK	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1 Gene: Jann_2905: Various polyols ABC transporter, ATP-binding component	Loktanella vestfoldensis SKA53 Gene: SKA53_11118: Various polyols ABC transporter, ATP-binding component	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597 Gene: OB2597_06145: Various polyols ABC transporter, ATP-binding component	Oceanicola granulosus HTCC2516 Gene: OG2516_12614: Various polyols ABC transporter, ATP-binding component	Paracoccus denitrificans PD1222 Gene: Pden_4842: Various polyols ABC transporter, ATP-binding component	Rhodobacter sphaeroides 2.4.1 Gene: RSP_0094: Various polyols ABC transporter, ATP-binding component	Rhodobacterales bacterium HTCC2654 Gene: RB2654_13855: Various polyols ABC transporter, ATP-binding component	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040 Gene: TM1040_0428: Various polyols ABC transporter, ATP-binding component	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36 Gene: EE36_14637: Various polyols ABC transporter, ATP-binding component	Various polyols ABC transporter, ATP-binding component
smoS	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1 Gene: Jann_2906: Sorbitol dehydrogenase (EC 1.1.1.14)	Loktanella vestfoldensis SKA53 Gene: SKA53_11123: Sorbitol dehydrogenase (EC 1.1.1.14)	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597 Gene: OB2597_06150: Sorbitol dehydrogenase (EC 1.1.1.14)	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222 Gene: Pden_4841: Sorbitol dehydrogenase (EC 1.1.1.14)	Rhodobacter sphaeroides 2.4.1 Gene: RSP_0095: Sorbitol dehydrogenase (EC 1.1.1.14)	Rhodobacterales bacterium HTCC2654 Gene: RB2654_13850: Sorbitol dehydrogenase (EC 1.1.1.14)	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040 Gene: TM1040_0427: Sorbitol dehydrogenase (EC 1.1.1.14)	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36	Sorbitol dehydrogenase (EC 1.1.1.14)
mtlK	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1 Gene: Jann_2907: Mannitol dehydrogenase (EC 1.1.1.67)	Loktanella vestfoldensis SKA53 Gene: SKA53_11128: Mannitol dehydrogenase (EC 1.1.1.67)	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597 Gene: OB2597_06155: Mannitol dehydrogenase (EC 1.1.1.67)	Oceanicola granulosus HTCC2516 Gene: OG2516_12619: Mannitol dehydrogenase (EC 1.1.1.67)	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1 Gene: RSP_0096: Mannitol dehydrogenase (EC 1.1.1.67)	Rhodobacterales bacterium HTCC2654 Gene: RB2654_13845: Mannitol dehydrogenase (EC 1.1.1.67)	Roseobacter sp. MED193 Gene: MED193_08118: Mannitol dehydrogenase (EC 1.1.1.67)	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040 Gene: TM1040_0426: Mannitol dehydrogenase (EC 1.1.1.67)	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36 Gene: EE36_14632: Mannitol dehydrogenase (EC 1.1.1.67)	Mannitol dehydrogenase (EC 1.1.1.67)
mtlZ	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597 Gene: OB2597_06160: Fructokinase (EC 2.7.1.4)	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36 Gene: EE36_14627: Fructokinase (EC 2.7.1.4)	Fructokinase (EC 2.7.1.4)
smoD	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222 Gene: Pden_4840: Putative mannitol dehydrogenase (EC 1.1.1.67), similar to arabinitol dehydrogenase	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36	Putative mannitol dehydrogenase (EC 1.1.1.67), similar to arabinitol dehydrogenase

CRON 3.
Pden_4851	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	* Paracoccus denitrificans PD1222 Site: position = -122 score = 5.44952 sequence = AATTTGACACGCGTAAAATA Gene: Pden_4851: Putative sugar polyol ABC transporter, substrate-binding component	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36	Putative sugar polyol ABC transporter, substrate-binding component
Pden_4850	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222 Gene: Pden_4850: Putative sugar polyol ABC transporter, ATP-binding protein	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36	Putative sugar polyol ABC transporter, ATP-binding protein
Pden_4849	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222 Gene: Pden_4849: Putative sugar polyol ABC transporter, permease components	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36	Putative sugar polyol ABC transporter, permease components
scrK	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222 Gene: Pden_4848: Fructokinase (EC 2.7.1.4)	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36	Fructokinase (EC 2.7.1.4)
pfkZ	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222 Gene: Pden_4847: 6-phosphofructokinase (EC 2.7.1.11), PF08013 family	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36	6-phosphofructokinase (EC 2.7.1.11), PF08013 family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog SmoR - Rhodobacterales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --