Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Crp regulog to Shewanella benthica KT99

Reference regulog properties
Source regulog: Crp - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Phylum: Proteobacteria
Propagated regulon:
Target genome Shewanella benthica KT99
Orthologous TF(s) KT99_08888
Regulated genes 162
Built upon 2713 sites [see more]
Predicted regulatory interactions in Shewanella benthica KT99
Locus tag Position Score Sequence
Position: -135
Score: 3.9
Sequence: GGTTTTGACCTGCGTCACACTT
Position: -72
Score: 4
Sequence: TTTAGTGACCTTTATCACGCCA
Locus tag: KT99_05912
KT99_05912 -135 3.9 GGTTTTGACCTGCGTCACACTT
-72 4 TTTAGTGACCTTTATCACGCCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3987
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1 SO3987 -83 3.9 TCTTGTGAGCGAGTTCACGCCT
Shewanella putrefaciens CN-32 Sputcn32_0679 -83 4 TCTTGTGAGCCAGTTCACGCCT
Shewanella sp W3-18-1 Sputw3181_3492 -83 4 TCTTGTGAGCCAGTTCACGCCT
Shewanella sp ANA-3 Shewana3_0651 -83 4 TCTTGTGAGCCAGTTCACGCCT
Shewanella sp MR-4 Shewmr4_0652 -83 4.1 TCTTGTGACCTAGTTCACGCCT
Shewanella sp MR-7 Shewmr7_3370 -83 4.1 TCTTGTGACCTAGTTCACGCCT
Shewanella baltica OS155 Sbal_0787 -277 3.7 TAAAGCGATATATGTAACAAAC
Shewanella amazonensis SB2B Sama_0602 -307 4.1 AAATTGAATATGGATCACATTT
Shewanella loihica PV-4 Shew_0778 -147 5.1 AGATTTGATGTAAATCACATTT
-82 4.4 TAAAGTGACCTGTCTCACACCT
Shewanella pealeana ATCC 700345 Spea_0734 -147 4.1 CGATATGATTTGGATCACTTTT
-82 4.2 AATAGTGATATACATCACAAGG
Shewanella halifaxensis HAW-EB4 Shal_0787 -81 4.9 AATAGTGATGCAGATCACACTG
Shewanella piezotolerans WP3 swp_4346 -4 4.6 TACTGTGATCGATATCACGTCT
Shewanella sediminis HAW-EB3 Ssed_0816 -321 3.9 AAACTCAATATAGTTCACATTT
-147 3.9 GGATATGATCTAAATCACACTG
Shewanella woodyi ATCC 51908 Swoo_3763 -82 4.3 TTGTGTGACCTGCATCACGCCA
Position: -91
Score: 4.2
Sequence: TGATTTGATATCAATCACACCT
Locus tag: KT99_05932
KT99_05932 -91 4.2 TGATTTGATATCAATCACACCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: asnC
Ortholog function: regulatory protein AsnC
Shewanella sp ANA-3 Shewana3_0798 -156 4.2 AAAGGTGACGAGTATAACAAAA
Shewanella sp MR-4 Shewmr4_3140 -156 4.2 AAAGGTGACGAGTATAACAAAA
Shewanella sp MR-7 Shewmr7_0826 -156 4.2 AAAGGTGACGAGTATAACAAAA
Shewanella denitrificans OS217 Sden_3049 -175 4 TAATGTGATTGGTATAAGAACA
Shewanella pealeana ATCC 700345 Spea_0737 -161 4.3 TATCGATATCTGCCTCACATAT
-7 3.8 ATTTATTATGGAAGTCCCATTT
Shewanella halifaxensis HAW-EB4 Shal_0790 -248 3.8 ATTTATAATGATAATCACAACT
Shewanella piezotolerans WP3 swp_4340 -322 3.9 TAATGCAATTGGTATTACAATA
Shewanella woodyi ATCC 51908 Swoo_0916 -67 3.7 TATTTTTACTTGCCTCAACTAA
Position: -184
Score: 4.6
Sequence: ATGTGTGATCTGCTCCACAAAC
Locus tag: KT99_06307
KT99_06307 -184 4.6 ATGTGTGATCTGCTCCACAAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sama_2899
Ortholog function: transcriptional regulator, LysR family
Shewanella amazonensis SB2B Sama_2899 -126 4.2 AACTGTGATCTGAACCGCAGAA
Shewanella loihica PV-4 Shew_3153 -137 4.2 AACTGTGATGTGATCCGCAGAA
Shewanella piezotolerans WP3 swp_4120 -157 4.2 TATTGTGACCGGTTACGCAGTA
Shewanella sediminis HAW-EB3 Ssed_3566 -184 5.1 ATGTGTGACCAGGTTCACAATT
Position: -117
Score: 3.4
Sequence: TAATATGATCATGGTTTTATTT
Locus tag: KT99_06317
KT99_06317 -117 3.4 TAATATGATCATGGTTTTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sputcn32_0312
Ortholog function: hypothetical protein
Shewanella amazonensis SB2B Sama_2901 -285 4.1 AAAAGAGACTTAGATCATATTT
Shewanella loihica PV-4 Shew_3155 -286 3.9 AAAATAGATCTTGATCATATTT
Shewanella piezotolerans WP3 swp_4118 -97 3.3 TTATATAATGATTTTTATATTT
Position: -158
Score: 3.5
Sequence: ATGGCTGATTGGACTCACAATG
Locus tag: KT99_06322
KT99_06322 -158 3.5 ATGGCTGATTGGACTCACAATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrfC
Ortholog function: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Shewanella putrefaciens CN-32 Sputcn32_0314 -99 4.3 AAGTGTGATGCTGGTCAATAAA
Shewanella sp W3-18-1 Sputw3181_3894 -99 4.2 AAGTGTGATACTGGTCAATAAA
Shewanella sp ANA-3 Shewana3_3961 -99 5.2 AAATGTGATCTATGTCAAAAAA
Shewanella sp MR-4 Shewmr4_3763 -99 5.2 AAATGTGATCTATGTCAAAAAA
Shewanella sp MR-7 Shewmr7_3836 -99 5.2 AAATGTGATCTGTGTCAAAAAA
Shewanella baltica OS155 Sbal_0182 -97 5.2 AAATGTGATCGTGTTCAAAAAA
Shewanella frigidimarina NCIMB 400 Sfri_0614 -115 3.7 TTAATTGATTACGATCAATTTA
Shewanella amazonensis SB2B Sama_2903 -285 4.1 AAAAGAGACTTAGATCATATTT
Shewanella loihica PV-4 Shew_3157 -286 3.9 AAAATAGATCTTGATCATATTT
Shewanella pealeana ATCC 700345 Spea_3966 -127 3.4 TTTTATGATGAATAAAACGTTC
Shewanella halifaxensis HAW-EB4 Shal_0302 -100 3.6 ATAATTGATTTGTATCAATGTT
Shewanella piezotolerans WP3 swp_4116 -97 3.3 TTATATAATGATTTTTATATTT
Shewanella sediminis HAW-EB3 Ssed_0242 -100 4.1 TTGTTTGATTTAAATCAAGGTT
Shewanella woodyi ATCC 51908 Swoo_0241 -92 4 TAACTTGATTTGAATCAATATT
Position: -138
Score: 5
Sequence: AAACGTGATCGGTTTCACGTTT
Locus tag: KT99_06472
KT99_06472 -138 5 AAACGTGATCGGTTTCACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadD-2
Ortholog function: long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Shewanella putrefaciens CN-32 Sputcn32_0970 -118 4.6 CGTTGTGATGTTTTTCACGATA
Shewanella sp W3-18-1 Sputw3181_3197 -117 4.6 CGTTGTGATGTTTTTCACGATA
Shewanella frigidimarina NCIMB 400 Sfri_3097 -256 5 TTTGGTGACATAGATCACATAT
Shewanella piezotolerans WP3 swp_3965 -222 3.7 ATGCGCGATTTGCATTACCTTT
Shewanella sediminis HAW-EB3 Ssed_3695 -135 5.4 TAATGTGATCTATTTCTCATAT
Shewanella woodyi ATCC 51908 Swoo_3995 -147 3.7 AACCATGATCTATTTCGTAATT
Position: -261
Score: 3.5
Sequence: TTTTTAGATATTTTTCTTAATT
Position: -146
Score: 4
Sequence: ATTTGTGCGCCCCTTCATAGTT
Locus tag: KT99_18317
KT99_18317 -261 3.5 TTTTTAGATATTTTTCTTAATT
-146 4 ATTTGTGCGCCCCTTCATAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ygbA
Ortholog function: nitrosative stress induced protein
Shewanella oneidensis MR-1 SO0324 -97 4.1 TTTTGTGCGCACCTTCATAAAT
Shewanella putrefaciens CN-32 Sputcn32_3663 -96 4.1 TTTTGTGCGCACCTTCATAAAT
Shewanella sp W3-18-1 Sputw3181_3804 -96 4.1 TTTTGTGCGCACCTTCATAAAT
Shewanella sp ANA-3 Shewana3_3845 -97 4.1 TTTTGTGCGCATCTTCATAAAT
Shewanella sp MR-4 Shewmr4_3649 -97 4.1 TTTTGTGCGCATCTTCATAAAT
Shewanella sp MR-7 Shewmr7_0295 -97 4.1 TTTTGTGCGCATCTTCATAAAT
Shewanella baltica OS155 Sbal_4067 -96 4.1 TTTTGTGCGCACCTTCATAAAT
Shewanella frigidimarina NCIMB 400 Sfri_0404 -142 4 TTTTGCGATCCCAACCTCAAAA
Shewanella amazonensis SB2B Sama_3326 -94 3.6 TTTTGTGCGCATCTTCATGCTT
Shewanella loihica PV-4 Shew_0259 -96 4.1 TTTTGTGCGCATCTTCATAATT
Shewanella pealeana ATCC 700345 Spea_0303 -96 3.9 TTTTGTGCACATCTTCAAAGTT
Shewanella halifaxensis HAW-EB4 Shal_3986 -96 4 TTTTGTGCACATCTTCAAACTT
Shewanella piezotolerans WP3 swp_2171 -96 4 TTTTGTGCGCACCTTCAAACTT
Shewanella sediminis HAW-EB3 Ssed_4199 -187 3.9 TTTTGTGCACATCTTCATACTT
Shewanella woodyi ATCC 51908 Swoo_0395 -82 3.4 TTCTGTGCGCACCTTCATAGAT
Position: -248
Score: 3.9
Sequence: ATTCGTGAGTCATGTCTCGAAT
Position: -138
Score: 4.3
Sequence: TTATATGAGATAACTCACAAAG
Locus tag: KT99_18387
KT99_18387 -248 3.9 ATTCGTGAGTCATGTCTCGAAT
-138 4.3 TTATATGAGATAACTCACAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1415
Ortholog function: transcriptional regulator, TetR family
Shewanella oneidensis MR-1 SO1415 -135 3.8 GTATTTGAAGTAACTCACAAAG
-94 4 AGGTGTGACCTTTATCCCGATT
Shewanella sp MR-4 Shewmr4_0298 -241 3.8 ATTCGTGAGTTATCTCGTGAAT
-94 4 TGATGTGAGCTTAATCCCGATT
Shewanella loihica PV-4 Shew_0277 -137 4.4 TTGTTTGACGTAATTCACAAAG
Shewanella pealeana ATCC 700345 Spea_0326 -247 4.1 ATTCGTGAGTCAGCTCTCGAAT
-138 4.5 TTATATGACGTAATTCACAAAG
Shewanella halifaxensis HAW-EB4 Shal_3965 -247 4.2 ATTCGTGAGGCAGCTCTCGAAT
-138 4.3 TTGTATGACGTAACTCACAAAG
Shewanella sediminis HAW-EB3 Ssed_4183 -259 3.9 ATTCGTGAAGCAGATCTCGAAG
-136 4.1 TTACATGAGGTAACTCACAAAG
Position: -190
Score: 4.1
Sequence: TATTGTGAAATCGCGCAGAAAA
Locus tag: KT99_18622
KT99_18622 -190 4.1 TATTGTGAAATCGCGCAGAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: purH
Ortholog function: IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)
Shewanella oneidensis MR-1 SO0442 -180 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella putrefaciens CN-32 Sputcn32_3401 -193 4 TATTGTGAAATCACGCAGAAAA
Shewanella sp W3-18-1 Sputw3181_0542 -193 4 TATTGTGAAATCACGCAGAAAA
Shewanella sp ANA-3 Shewana3_0441 -181 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella sp MR-4 Shewmr4_0445 -181 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella sp MR-7 Shewmr7_3584 -181 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella baltica OS155 Sbal_0420 -195 4 TATTGTGAAATCACGCAGAAAA
Shewanella frigidimarina NCIMB 400 Sfri_0493 -195 3.9 TATTGTGAAATCACACAGAAAA
Shewanella amazonensis SB2B Sama_0395 -194 4 TATTGTGAAATCACGCAGAAAA
Shewanella loihica PV-4 Shew_3412 -182 4 TATTGTGAAATCGCACAGAAAA
Shewanella pealeana ATCC 700345 Spea_0432 -181 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella halifaxensis HAW-EB4 Shal_0488 -182 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella piezotolerans WP3 swp_4724 -181 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella sediminis HAW-EB3 Ssed_0444 -282 4 GAGTGTGACGCTCTGCACAAAT
-191 4.2 TATTGTGAAATCGTGCAGAAAA
Shewanella woodyi ATCC 51908 Swoo_0296 -192 3.6 TATTGTGAAATCACATATAAAT
Position: -123
Score: 4.1
Sequence: ATTCATGATCTCCTTCACGTTG
Locus tag: KT99_18687
KT99_18687 -123 4.1 ATTCATGATCTCCTTCACGTTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sputcn32_0539
Ortholog function: mechanosensitive ion channel
Shewanella putrefaciens CN-32 Sputcn32_0539 -94 4.3 TTACATGATACGCTTCACAATG
Shewanella putrefaciens CN-32 Sputcn32_0539 -94 4.3 TTACATGATACGCTTCACAATG
Shewanella sp W3-18-1 Sputw3181_3633 -94 4.3 TTACATGATACGCTTCACAATG
Shewanella sp W3-18-1 Sputw3181_3633 -94 4.3 TTACATGATACGCTTCACAATG
Shewanella sp ANA-3 Shewana3_3684 -94 4.3 TTACATGATACGCTTCACAATG
Shewanella sp ANA-3 Shewana3_3684 -94 4.3 TTACATGATACGCTTCACAATG
Shewanella sp MR-4 Shewmr4_3509 -94 4.3 TTACATGATACGCTTCACAATG
Shewanella sp MR-4 Shewmr4_3509 -94 4.3 TTACATGATACGCTTCACAATG
Shewanella sp MR-7 Shewmr7_0443 -94 4.3 TTACATGATACGCTTCACAATG
Shewanella sp MR-7 Shewmr7_0443 -94 4.3 TTACATGATACGCTTCACAATG
Shewanella baltica OS155 Sbal_3856 -95 4.5 TTACATGATACGCTTCACACAT
Shewanella baltica OS155 Sbal_3856 -95 4.5 TTACATGATACGCTTCACACAT
Shewanella loihica PV-4 Shew_3394 -144 4.1 TTGCTTGATATGCTTCACGCTA
Shewanella loihica PV-4 Shew_3394 -144 4.1 TTGCTTGATATGCTTCACGCTA
Shewanella pealeana ATCC 700345 Spea_0457 -138 4.1 AAGCTTGATCCTCTTCACGCTA
Shewanella pealeana ATCC 700345 Spea_0457 -138 4.1 AAGCTTGATCCTCTTCACGCTA
Shewanella halifaxensis HAW-EB4 Shal_0532 -137 4 AAGCATGATCCCCTTCACGCTA
Shewanella halifaxensis HAW-EB4 Shal_0532 -137 4 AAGCATGATCCCCTTCACGCTA
Shewanella sediminis HAW-EB3 Ssed_0457 -154 4.2 ATTCATGATCCACTTCACCTAG
Shewanella sediminis HAW-EB3 Ssed_0457 -154 4.2 ATTCATGATCCACTTCACCTAG
Shewanella woodyi ATCC 51908 Swoo_4512 -127 3.9 ATTCATGATCCTCTTCACGCAG
Shewanella woodyi ATCC 51908 Swoo_4512 -127 3.9 ATTCATGATCCTCTTCACGCAG
Position: -102
Score: 3.8
Sequence: CAACGTGAAGGAGATCATGAAT
Locus tag: KT99_18692
KT99_18692 -102 3.8 CAACGTGAAGGAGATCATGAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4138
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1 SO4138 -96 4.2 CATTGTGAAGCGTATCATGTAA
Shewanella putrefaciens CN-32 Sputcn32_0540 -97 4.2 CATTGTGAAGCGTATCATGTAA
Shewanella sp W3-18-1 Sputw3181_3632 -97 4.2 CATTGTGAAGCGTATCATGTAA
Shewanella sp ANA-3 Shewana3_3683 -96 4.2 CATTGTGAAGCGTATCATGTAA
Shewanella sp MR-4 Shewmr4_3508 -96 4.2 CATTGTGAAGCGTATCATGTAA
Shewanella sp MR-7 Shewmr7_0444 -96 4.2 CATTGTGAAGCGTATCATGTAA
Shewanella baltica OS155 Sbal_3855 -97 4.3 ATGTGTGAAGCGTATCATGTAA
Shewanella loihica PV-4 Shew_3393 -109 3.9 TAGCGTGAAGCATATCAAGCAA
Shewanella pealeana ATCC 700345 Spea_0458 -96 3.8 TAGCGTGAAGAGGATCAAGCTT
Shewanella halifaxensis HAW-EB4 Shal_0533 -96 3.8 TAGCGTGAAGGGGATCATGCTT
Position: -92
Score: 4.8
Sequence: AAGTGTGATCGAGTTAACCTTA
Locus tag: KT99_18702
KT99_18702 -92 4.8 AAGTGTGATCGAGTTAACCTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: udp
Ortholog function: Uridine phosphorylase (EC 2.4.2.3)
Shewanella oneidensis MR-1 SO4133 -92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella putrefaciens CN-32 Sputcn32_0543 -230 4.4 AAGTTAGATCTGGTTCACACTT
-92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella sp W3-18-1 Sputw3181_3629 -230 4.4 AAGTTAGATCTGGTTCACACTT
-92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella sp ANA-3 Shewana3_3680 -92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella sp MR-4 Shewmr4_3505 -92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella sp MR-7 Shewmr7_0447 -92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella baltica OS155 Sbal_3852 -229 3.8 GATTAGGATCTGGTTCACACTT
-92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella denitrificans OS217 Sden_3074 -92 4.4 AACTGTGATGAAGTTAACCAAA
Shewanella frigidimarina NCIMB 400 Sfri_3403 -244 4.7 TAACTTGATGTAAATCACGTTA
-92 4.8 ATATGTGATCAAGTTAACCTTA
Shewanella amazonensis SB2B Sama_0412 -92 4.7 ATTCGTGATCCAGTTAACCTTA
Shewanella loihica PV-4 Shew_3390 -92 4.6 AAGTGTGATCAGGTTAACCTTA
Shewanella pealeana ATCC 700345 Spea_0460 -92 4.7 AAGTGTGATCGGCTTAACCTTT
Shewanella halifaxensis HAW-EB4 Shal_0535 -92 4.6 AAGTGTGATCAGTTTAACCTTT
Shewanella piezotolerans WP3 swp_4702 -310 4.7 ATTTGTGAGTTAGATCATGTTT
-92 4.6 AAGTGTGATCAGGTTAACCTTA
Shewanella sediminis HAW-EB3 Ssed_0461 -92 4.7 AAGTGTGATCGAGCTAACCTTT
Shewanella sediminis HAW-EB3 Ssed_2504 -84 3.9 CAATGTAATATGCAAAACATTT
Shewanella woodyi ATCC 51908 Swoo_4509 -272 4.9 AAATGTGATGTGGGTCAACAAA
-92 4.7 AAGTGTGATCAAGTTAACCTTA
Position: -135
Score: 4.3
Sequence: AAACGAGACCAGGATCACACTT
Locus tag: KT99_18887
KT99_18887 -135 4.3 AAACGAGACCAGGATCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hemC
Ortholog function: Porphobilinogen deaminase (EC 2.5.1.61)
Shewanella oneidensis MR-1 SO4313 -172 3.9 GATTGTGCTCATGTTAACACTT
-132 4.5 AAATGAGAGGTCCATCACACTT
Shewanella putrefaciens CN-32 Sputcn32_3587 -173 4.1 AAGTGTGCTTATGTTAACACTT
-133 5.2 AAATGAGATCTGCATCACATTT
Shewanella sp W3-18-1 Sputw3181_3726 -173 4.1 AAGTGTGCTTATGTTAACACTT
-133 5.2 AAATGAGATCTGCATCACATTT
Shewanella sp ANA-3 Shewana3_0386 -172 4.2 AAGTGTGCTCATGTTAACACTT
-132 4.3 AAATGAGAAGTTCGTCACACTT
Shewanella sp MR-4 Shewmr4_0388 -172 4.2 AAGTGTGCTCATGTTAACACTT
-132 4.3 AAATGAGAAGTTCGTCACACTT
Shewanella sp MR-7 Shewmr7_3638 -172 4.2 AAGTGTGCTCATGTTAACACTT
-132 4.3 AAATGAGAAGTTCGTCACACTT
Shewanella baltica OS155 Sbal_4000 -132 4.9 AAATGTGAAGTCCGTCACACTT
Shewanella denitrificans OS217 Sden_0388 -85 3.9 AAATCTGCTTTGCTTCAAACAT
Shewanella frigidimarina NCIMB 400 Sfri_0440 -167 4 AATGGTGATCATCGTAGCATTT
Shewanella amazonensis SB2B Sama_3254 -89 5.1 ATTTGCGATAGAGATCACATTT
Shewanella loihica PV-4 Shew_0318 -119 4.7 ATTTGAGAGCTGGATCACACTT
Shewanella pealeana ATCC 700345 Spea_0373 -133 5 AAATGCGATCAAGATCACACTT
Shewanella halifaxensis HAW-EB4 Shal_3917 -133 5.1 AAATGTGATCAACATCACGCTT
Shewanella piezotolerans WP3 swp_0402 -40 4.3 AAATGTAATCCGTATCGCAACA
Shewanella sediminis HAW-EB3 Ssed_4133 -133 4.9 AAATGAGATCAAGATCACACTT
Shewanella woodyi ATCC 51908 Swoo_0483 -229 4.6 AAATGAGACCAAGATCACACTT
Position: -89
Score: 4.6
Sequence: AAGTGTGATCCTGGTCTCGTTT
Position: 3
Score: 3.8
Sequence: AACAATGAACAGAATCACATTA
Locus tag: KT99_18892
KT99_18892 -89 4.6 AAGTGTGATCCTGGTCTCGTTT
3 3.8 AACAATGAACAGAATCACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyaA
Ortholog function: Adenylate cyclase (EC 4.6.1.1)
Shewanella oneidensis MR-1 SO4312 -91 5 AAGTGTGATGGACCTCTCATTT
Shewanella putrefaciens CN-32 Sputcn32_3586 -91 5.4 AAATGTGATGCAGATCTCATTT
-51 3.8 AAGTGTTAACATAAGCACACTT
Shewanella sp W3-18-1 Sputw3181_3725 -91 5.4 AAATGTGATGCAGATCTCATTT
-51 3.8 AAGTGTTAACATAAGCACACTT
Shewanella sp ANA-3 Shewana3_0387 -92 4.7 AAGTGTGACGAACTTCTCATTT
-52 3.9 AAGTGTTAACATGAGCACACTT
Shewanella sp MR-4 Shewmr4_0389 -92 4.7 AAGTGTGACGAACTTCTCATTT
-52 3.9 AAGTGTTAACATGAGCACACTT
Shewanella sp MR-7 Shewmr7_3637 -92 4.7 AAGTGTGACGAACTTCTCATTT
-52 3.9 AAGTGTTAACATGAGCACACTT
Shewanella frigidimarina NCIMB 400 Sfri_0441 -129 3.8 AAATGCTACGATGATCACCATT
-100 3.9 AAATGTGATCTTGATTGGCAAA
Shewanella amazonensis SB2B Sama_3253 -90 5.4 AAATGTGATCTCTATCGCAAAT
Shewanella loihica PV-4 Shew_0319 -88 5.1 AAGTGTGATCCAGCTCTCAAAT
Shewanella pealeana ATCC 700345 Spea_0374 -87 5.3 AAGTGTGATCTTGATCGCATTT
Shewanella halifaxensis HAW-EB4 Shal_3916 -88 5.3 AAGCGTGATGTTGATCACATTT
Shewanella piezotolerans WP3 swp_0403 -106 5.5 AAATGTGATCGGAGTCACATTT
Shewanella sediminis HAW-EB3 Ssed_4132 -90 5.2 AAGTGTGATCTTGATCTCATTT
Shewanella woodyi ATCC 51908 Swoo_0484 -98 5 AAGTGTGATCTTGGTCTCATTT
Position: -335
Score: 3.9
Sequence: TTTCGTGATTTAACTCACTAGA
Locus tag: KT99_18947
KT99_18947 -335 3.9 TTTCGTGATTTAACTCACTAGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: prmA
Ortholog function: ribosomal protein L11 methyltransferase (EC 2.1.1.-)
Shewanella loihica PV-4 Shew_0331 -274 3.8 AAGCGTGAGACACCTCACCCTG
-242 4.1 ACATTTGACGTCGATCACAAAC
Shewanella pealeana ATCC 700345 Spea_0391 -283 4.3 TTTCGTGAAGGAACTCACCCTT
-251 4.1 CTATTAGATCAAGATCACAAAT
Shewanella halifaxensis HAW-EB4 Shal_3900 -281 3.9 TTTCGTGATCAGTGTCACTACA
-249 3.7 CTATTAGACGTAGATCACAAAC
Shewanella piezotolerans WP3 swp_0427 -286 4.5 AATCGTGACTTTGCTCACCCTA
Shewanella sediminis HAW-EB3 Ssed_4117 -53 5 TAATGTGATTGGTATTACAATA
Shewanella woodyi ATCC 51908 Swoo_0506 -233 4.5 TTTTTTGAACCACATCACAAAC
Position: -125
Score: 3.9
Sequence: GTTTGTGACAGGCTTCAAATAC
Position: -93
Score: 4
Sequence: TCTAGTGAGTTAAATCACGAAA
Locus tag: KT99_18952
KT99_18952 -125 3.9 GTTTGTGACAGGCTTCAAATAC
-93 4 TCTAGTGAGTTAAATCACGAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: frdC1
Ortholog function: Fumarate reductase cytochrome b subunit
Shewanella oneidensis MR-1 SO0396 -144 4 TTTTGTGATCATCTTCTAAGAG
-79 3.9 ATTTGTGAGCGATATTAATTTT
Shewanella putrefaciens CN-32 Sputcn32_3441 -144 4.3 TTTTGTGATCTTCTTCTAAGAG
-67 4.1 ATTTGTGAGCGATATTAACTTT
Shewanella sp W3-18-1 Sputw3181_0498 -144 4.3 TTTTGTGATCTTCTTCTAAGAG
-67 4.1 ATTTGTGAGCGATATTAACTTT
Shewanella sp ANA-3 Shewana3_0401 -144 4.2 TTTTGTGATCCTCTTCTAAGAG
-77 3.9 ATTTGTGAGCGATATTAATTTT
Shewanella sp MR-4 Shewmr4_0402 -144 4.2 TTTTGTGATCCTCTTCTAAGAG
-77 3.9 ATTTGTGAGCGATATTAATTTT
Shewanella sp MR-7 Shewmr7_3623 -144 4.2 TTTTGTGATCCTCTTCTAAGAG
-76 3.9 ATTTGTGAGCGATATTAATTTT
Shewanella baltica OS155 Sbal_3937 -145 4.3 TTTTGTGATCTTCTTCTAAGAG
-105 4.1 TCAATTGATCTGGCTCACGTTT
Shewanella frigidimarina NCIMB 400 Sfri_0456 -135 3.8 TTGTGTGACCCGCTTCTAACTC
-103 3.8 ATAGGTGAACATTATCACGGTT
Shewanella frigidimarina NCIMB 400 Sfri_0456 -135 3.8 TTGTGTGACCCGCTTCTAACTC
-103 3.8 ATAGGTGAACATTATCACGGTT
Shewanella amazonensis SB2B Sama_3222 -144 4.1 GTTTGTGATCCGCTTCCAATAA
Shewanella pealeana ATCC 700345 Spea_0392 -138 4.7 ATTTGTGATCTTGATCTAATAG
-106 4 AAGGGTGAGTTCCTTCACGAAA
-94 4.1 TTTGTTGATCTATCTCACGGTT
Shewanella halifaxensis HAW-EB4 Shal_3899 -138 3.9 GTTTGTGATCTACGTCTAATAG
-106 4.2 TGTAGTGACACTGATCACGAAA
-94 4.1 TTTGTTGATCTATCTCACGGTT
Shewanella piezotolerans WP3 swp_0428 -106 3.8 TAGGGTGAGCAAAGTCACGATT
-94 3.9 TTTGTTGATCTATCTCACTGTT
Shewanella sediminis HAW-EB3 Ssed_4116 -126 4.5 GTTTGTGATCTGCTTCAAATAG
Shewanella woodyi ATCC 51908 Swoo_0507 -138 4.8 GTTTGTGATGTGGTTCAAAAAA
Position: -307
Score: 4.1
Sequence: TTTTTTGATCGAGGTCAATAAA
Position: -265
Score: 4.1
Sequence: ATATGTGATTTTAAATAAAATT
Locus tag: KT99_02632
KT99_02632 -307 4.1 TTTTTTGATCGAGGTCAATAAA
-265 4.1 ATATGTGATTTTAAATAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cymA
Ortholog function: membrane anchored tetraheme cytochrome c, CymA
Shewanella oneidensis MR-1 SO4591 -307 4 AAATGTCGCCTTGATCACATTT
Shewanella putrefaciens CN-32 Sputcn32_0286 -306 4.7 AAGTGTGCTATCGGTCACAATT
Shewanella sp W3-18-1 Sputw3181_3916 -306 4.1 AAGTGTGCCATCGATTACAATT
Shewanella sp ANA-3 Shewana3_3977 -309 4 AAATGTCGCGTGGATCACATTT
Shewanella sp MR-4 Shewmr4_3777 -308 4.3 AAATGTCGTCTTGATCACATTT
Shewanella sp MR-7 Shewmr7_3850 -318 4.5 AAATGTAGTGTTGATCACATTT
Shewanella frigidimarina NCIMB 400 Sfri_0272 -146 4.3 AGTCGAGATCTAGCTCGCATTT
Shewanella loihica PV-4 Shew_3540 -169 4.2 TATTATGAGCAATTTCATAAAA
Shewanella piezotolerans WP3 swp_4806 -276 3.8 ATTTGAGATCTAAAAAAAAATA
Shewanella sediminis HAW-EB3 Ssed_0216 -86 3.7 CAGTATGATCTAGTTTATAATT
Shewanella woodyi ATCC 51908 Swoo_0195 -152 4.3 AATTTTTATATTTATCAAAATA
Position: -140
Score: 3.8
Sequence: TATTTTGAACCTGATCAATGTT
Locus tag: KT99_02947
KT99_02947 -140 3.8 TATTTTGAACCTGATCAATGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: prlC
Ortholog function: Oligopeptidase A (EC 3.4.24.70)
Shewanella oneidensis MR-1 SO4699 -136 4.2 AATTGAGAACTGGCTCACTTTT
Shewanella putrefaciens CN-32 Sputcn32_0087 -178 4.3 AATTGAGAACTAGTTCACTTTT
Shewanella sp W3-18-1 Sputw3181_3978 -178 4.3 AATTGAGAACTAGTTCACTTTT
Shewanella sp ANA-3 Shewana3_4051 -136 4.6 AATTGTGAACTGGTTCGCTTTT
Shewanella sp MR-4 Shewmr4_3842 -136 4.3 AATTGTGAACTGAGTCGCTTTT
Shewanella sp MR-7 Shewmr7_3935 -136 4.3 AATTGTGAACTGAGTCGCTTTT
Shewanella baltica OS155 Sbal_0124 -136 4.3 AAATGCGAACGAGTTCACTTTT
Shewanella frigidimarina NCIMB 400 Sfri_3874 -226 4 AATTGGGATCTTAGTCACTCTA
Shewanella loihica PV-4 Shew_3657 -247 3.8 ATTTGCGATCCGCTTGGCAATA
Shewanella pealeana ATCC 700345 Spea_4065 -143 3.9 AAACTTGATTAAGATCGCGGAT
Shewanella halifaxensis HAW-EB4 Shal_0193 -192 4.4 ATTTGCGACGTGGTTTACAATA
-142 4.2 AAATTTGATCTAGATCCTAGAT
Shewanella piezotolerans WP3 swp_4926 -311 3.7 ATTTGCGAGGCGCTTTGCAATA
-261 3.6 AAAATTGACTTTAGTCAAAGAT
Shewanella sediminis HAW-EB3 Ssed_0145 -210 4.1 ATTTGAGAAGTAATTCTCAATA
Shewanella woodyi ATCC 51908 Swoo_0124 -172 4.2 TTTTTTGAGCTGGGTCAAAGTA
Position: -151
Score: 3.9
Sequence: AACATTGATCAGGTTCAAAATA
Position: -101
Score: 3.5
Sequence: TATTGATAACCCGCCCACAAAT
Locus tag: KT99_02952
KT99_02952 -151 3.9 AACATTGATCAGGTTCAAAATA
-101 3.5 TATTGATAACCCGCCCACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4700
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1 SO4700 -154 4.5 AAAAGTGAGCCAGTTCTCAATT
Shewanella putrefaciens CN-32 Sputcn32_0086 -153 4.5 AAAAGTGAACTAGTTCTCAATT
Shewanella sp W3-18-1 Sputw3181_3979 -153 4.5 AAAAGTGAACTAGTTCTCAATT
Shewanella sp ANA-3 Shewana3_4052 -154 4.3 AAAAGCGAACCAGTTCACAATT
Shewanella sp MR-4 Shewmr4_3843 -95 4.4 AAAAGCGACTCAGTTCACAATT
Shewanella sp MR-7 Shewmr7_3936 -95 4.4 AAAAGCGACTCAGTTCACAATT
Shewanella baltica OS155 Sbal_0123 -154 4.6 AAAAGTGAACTCGTTCGCATTT
Shewanella frigidimarina NCIMB 400 Sfri_3875 -148 4 TAGAGTGACTAAGATCCCAATT
Shewanella loihica PV-4 Shew_3658 -101 3.6 TATTGCCAAGCGGATCGCAAAT
Shewanella halifaxensis HAW-EB4 Shal_0192 -105 4.2 TATTGTAAACCACGTCGCAAAT
Shewanella piezotolerans WP3 swp_4927 -104 3.7 TATTGCAAAGCGCCTCGCAAAT
Shewanella sediminis HAW-EB3 Ssed_0144 -115 4.2 TATTGAGAATTACTTCTCAAAT
Shewanella woodyi ATCC 51908 Swoo_0123 -153 4.3 TACTTTGACCCAGCTCAAAAAA
-78 3.9 AAGCGTTATCATTTACACATTA
Position: -65
Score: 4.7
Sequence: TTATGTGATCGGGGTAATATTT
Locus tag: KT99_03177
KT99_03177 -65 4.7 TTATGTGATCGGGGTAATATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: engB
Ortholog function: GTP-binding protein EngB
Shewanella oneidensis MR-1 SO4667 -96 4.7 TAATGTGATCGGGGTAATATTT
Shewanella putrefaciens CN-32 Sputcn32_3907 -96 4.6 TAATGTGATCGGAGTAATATTT
Shewanella sp W3-18-1 Sputw3181_0044 -96 4.6 TAATGTGATCGGAGTAATATTT
Shewanella sp ANA-3 Shewana3_4110 -96 4.7 TAATGTGATCGGGGTAATATTT
Shewanella sp MR-4 Shewmr4_3906 -96 4.7 TAATGTGATCGGGGTAATATTT
Shewanella sp MR-7 Shewmr7_3998 -96 4.7 TAATGTGATCGGGGTAATATTT
Shewanella baltica OS155 Sbal_0052 -95 4.6 TAATGTGATCGGAGTAATATTT
Shewanella denitrificans OS217 Sden_3621 -182 3.8 TATTATGCTCGAAATAATATTT
Shewanella frigidimarina NCIMB 400 Sfri_3944 -104 4.7 TAATGTGATCAGGCTAATATTT
Shewanella amazonensis SB2B Sama_0092 -96 4.1 ATATGTGATCGGGGCAATATTT
Shewanella loihica PV-4 Shew_3715 -95 4.7 TTATGTGATCGGGGTAATATTT
Shewanella pealeana ATCC 700345 Spea_0101 -96 4.7 TTATGTGATCGGGGTAATATTT
Shewanella halifaxensis HAW-EB4 Shal_4221 -96 4.7 TTATGTGATCGGGGTAATATTT
Shewanella piezotolerans WP3 swp_5074a -96 4.7 TTATGTGATCGGGGTAATATTT
Shewanella sediminis HAW-EB3 Ssed_0095 -95 4.7 TTATGTGATCGAGGTAATATTT
Shewanella woodyi ATCC 51908 Swoo_0058 -110 4.8 TATTGTGATCGAGGTAATATTT
Position: -95
Score: 4.4
Sequence: AAATATTACCCCGATCACATAA
Locus tag: KT99_03182
KT99_03182 -95 4.4 AAATATTACCCCGATCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cytcB
Ortholog function: Cytochrome c4
Shewanella oneidensis MR-1 SO4666 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella oneidensis MR-1 SO4666 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella putrefaciens CN-32 Sputcn32_3908 -95 4.3 AAATATTACTCCGATCACATTA
Shewanella putrefaciens CN-32 Sputcn32_3908 -95 4.3 AAATATTACTCCGATCACATTA
Shewanella sp W3-18-1 Sputw3181_0043 -95 4.3 AAATATTACTCCGATCACATTA
Shewanella sp W3-18-1 Sputw3181_0043 -95 4.3 AAATATTACTCCGATCACATTA
Shewanella sp ANA-3 Shewana3_4111 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella sp ANA-3 Shewana3_4111 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella sp MR-4 Shewmr4_3907 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella sp MR-4 Shewmr4_3907 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella sp MR-7 Shewmr7_3999 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella sp MR-7 Shewmr7_3999 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella baltica OS155 Sbal_0051 -95 4.3 AAATATTACTCCGATCACATTA
Shewanella baltica OS155 Sbal_0051 -95 4.3 AAATATTACTCCGATCACATTA
Shewanella denitrificans OS217 Sden_3622 -94 3.7 AAATATTATTTCGAGCATAATA
Shewanella denitrificans OS217 Sden_3622 -94 3.7 AAATATTATTTCGAGCATAATA
Shewanella frigidimarina NCIMB 400 Sfri_3945 -181 4.3 AAATATTAGCCTGATCACATTA
Shewanella frigidimarina NCIMB 400 Sfri_3945 -181 4.3 AAATATTAGCCTGATCACATTA
Shewanella amazonensis SB2B Sama_0091 -95 3.7 AAATATTGCCCCGATCACATAT
Shewanella loihica PV-4 Shew_3716 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella loihica PV-4 Shew_3716 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella pealeana ATCC 700345 Spea_0100 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella pealeana ATCC 700345 Spea_0100 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella halifaxensis HAW-EB4 Shal_4222 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella halifaxensis HAW-EB4 Shal_4222 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella piezotolerans WP3 swp_5075 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella piezotolerans WP3 swp_5075 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella sediminis HAW-EB3 Ssed_0094 -96 4.5 AAATATTACCTCGATCACATAA
Shewanella sediminis HAW-EB3 Ssed_0094 -96 4.5 AAATATTACCTCGATCACATAA
Shewanella woodyi ATCC 51908 Swoo_0057 -157 4.2 AAATATGATGTTTTGCACTTTA
-96 4.4 AAATATTACCTCGATCACAATA
Shewanella woodyi ATCC 51908 Swoo_0057 -157 4.2 AAATATGATGTTTTGCACTTTA
-96 4.4 AAATATTACCTCGATCACAATA
Position: -177
Score: 4.6
Sequence: TTTTTTGATATGGCTCAAGTAT
Locus tag: KT99_13044
KT99_13044 -177 4.6 TTTTTTGATATGGCTCAAGTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccoN
Ortholog function: Cbb3-type cytochrome c oxidase, subunit I, CcoN
Shewanella oneidensis MR-1 SO2364 -173 4.3 TTTTTTGACATGGCTCAAGTAT
-125 4.1 AAATGTGAAGGATAACGCATTG
Shewanella putrefaciens CN-32 Sputcn32_1959 -171 4.2 TTTTTTGACATTGCTCAAGTAT
Shewanella sp W3-18-1 Sputw3181_2046 -171 4.2 TTTTTTGACATTGCTCAAGTAT
Shewanella sp ANA-3 Shewana3_2107 -171 4.3 TTTTTTGACATGGCTCAAGTAT
Shewanella sp MR-4 Shewmr4_2006 -171 4.3 TTTTTTGACATGGCTCAAGTAT
Shewanella sp MR-7 Shewmr7_1969 -171 4.3 TTTTTTGACATGGCTCAAGTAT
Shewanella baltica OS155 Sbal_2201 -173 4.5 TTTTTTGATATTGCTCAAGTAT
Shewanella baltica OS155 Sbal_4487 -173 4.5 TTTTTTGATATTGCTCAAGTAT
Shewanella denitrificans OS217 Sden_1851 -182 4.7 TTTTTTGATGTAGCTCAAGTAT
Shewanella frigidimarina NCIMB 400 Sfri_2010 -186 4.4 TTTTTTGACTTAGCTCAAGTAT
Shewanella amazonensis SB2B Sama_1791 -180 4.3 TTTTTTGACACAGCTCAAGTAT
Shewanella loihica PV-4 Shew_1985 -178 4.5 TTTTTTGATATTGCTCAAGTAT
Shewanella pealeana ATCC 700345 Spea_2214 -219 4.1 TACCTTGATCTAGATCAACTTA
-176 4.6 TTTTTTGATATAGCTCAAGTAT
Shewanella halifaxensis HAW-EB4 Shal_2197 -221 4.5 AGATTTGATCTAGATCAACTTT
-178 4.6 TTTTTTGATATAGCTCAAGTAT
Shewanella piezotolerans WP3 swp_2572 -221 4.3 TAGCTTGATCTAGATCAACTTT
-178 4.4 TTTTTTGACATAGCTCAAGTAT
Shewanella sediminis HAW-EB3 Ssed_2211 -177 4.4 TTTTTTGACATAGCTCAAGTAT
Shewanella woodyi ATCC 51908 Swoo_2425 -220 4.3 TAGCTTGATCTAGATCAACTTT
-177 4.4 TTTTTTGACATAGCTCAAGTAT
Position: -126
Score: 4.1
Sequence: ATTTGTGATACAGGTAAAGGTA
Position: -84
Score: 3.9
Sequence: CCTCGTGATCTGTTTCAAGTAA
Locus tag: KT99_20049
KT99_20049 -126 4.1 ATTTGTGATACAGGTAAAGGTA
-84 3.9 CCTCGTGATCTGTTTCAAGTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hemG
Ortholog function: protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
Shewanella putrefaciens CN-32 Sputcn32_3038 -207 4.5 TTTTGTGAGCAAGCTAAAATTA
-135 3.9 AATTGATATTTAAATCACCTAG
Shewanella sp W3-18-1 Sputw3181_0907 -207 4.5 TTTTGTGAGCAAGCTAAAATTA
-135 3.9 AATTGATATTTAAATCACCTAG
Shewanella sp ANA-3 Shewana3_0871 -317 4.1 TTTTGTGAGCAAGCTAGAATTA
Shewanella sp MR-4 Shewmr4_3066 -320 4.1 TTTTGTGAGCAAGCTAGAATTA
Shewanella sp MR-7 Shewmr7_0906 -318 4.1 TTTTGTGAGCAAGCTAGAATTA
Shewanella baltica OS155 Sbal_3400 -316 4.4 TTTTGTGAGACAGTTAAAACTA
Shewanella frigidimarina NCIMB 400 Sfri_0813 -144 4 TTTTGCGCGGCAGTTCACATTG
-83 4.4 TGACGTGATCTGTTTCATGTAA
Shewanella amazonensis SB2B Sama_2882 -130 3.9 AAATGTGAGGCAGTTGGAATTT
Shewanella loihica PV-4 Shew_0678 -126 4.1 ATTTGTGACATCGGTAAACTTA
Shewanella pealeana ATCC 700345 Spea_0673 -140 4 TTTTGTGAGGTAGGTAAAGCTA
-98 3.8 CCTCGTGATCTGTTTCATGTAA
Shewanella halifaxensis HAW-EB4 Shal_3525 -139 4 TTTTGTGAGGTAGGTAAAGCTA
-97 3.8 CCTCGTGATCTGTTTCATGTAA
Shewanella piezotolerans WP3 swp_4046 -124 3.9 TTTTGTGAGGTAGGTAAAGGTA
-77 3.7 TGATCTGATTCAATTAAAAATA
Shewanella sediminis HAW-EB3 Ssed_3790 -120 4.9 ATTTGTGATGCAGGTAAAATTT
-78 4 TGCCGTGATCTGTTTCATGTAA
Shewanella woodyi ATCC 51908 Swoo_0793 -123 4.3 AATTGTGATATAGGTAAGAGTA
Position: -335
Score: 4.3
Sequence: ATTTGTGATATAGATCTATCTT
Locus tag: KT99_20299
KT99_20299 -335 4.3 ATTTGTGATATAGATCTATCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argR
Ortholog function: arginine pathway regulatory protein ArgR, repressor of arg regulon
Shewanella oneidensis MR-1 SO0769 -266 4.5 ATGTGTGACATGGATCTAATTT
Shewanella putrefaciens CN-32 Sputcn32_3220 -259 4.2 ATGTGTGACATGGATCTAGTTT
Shewanella sp W3-18-1 Sputw3181_0721 -259 4.2 ATGTGTGACATGGATCTAGTTT
Shewanella sp ANA-3 Shewana3_3510 -266 4.5 ATGTGTGACATGGATCTAATTT
Shewanella sp MR-4 Shewmr4_3340 -266 4.5 ATGTGTGACATGGATCTAATTT
Shewanella sp MR-7 Shewmr7_0613 -266 4.5 ATGTGTGACATGGATCTAATTT
Shewanella baltica OS155 Sbal_0608 -270 4.5 ATGTGTGACATGGATCTAATTT
Shewanella amazonensis SB2B Sama_0671 -262 4 ATTTGTGAGGTAGATCCTCAAA
Shewanella loihica PV-4 Shew_0866 -282 4.6 TTATGTGATATAGATCTAGATT
Shewanella piezotolerans WP3 swp_4101 -140 3.8 ATTTATACTCTACATCATATTT
Shewanella sediminis HAW-EB3 Ssed_0951 -254 3.8 ATTTTTGTTCTACATCAATAAA
Shewanella woodyi ATCC 51908 Swoo_1001 -311 4.5 TTTTGTGATGTAGGTCTACATT
Position: -46
Score: 4.1
Sequence: AAGATAGATCTATATCACAAAT
Locus tag: KT99_20304
KT99_20304 -46 4.1 AAGATAGATCTATATCACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mdh
Ortholog function: malate dehydrogenase (EC 1.1.1.37)
Shewanella oneidensis MR-1 SO0770 -47 4.3 AAATTAGATCCATGTCACACAT
Shewanella putrefaciens CN-32 Sputcn32_3219 -46 4 AAACTAGATCCATGTCACACAT
Shewanella sp W3-18-1 Sputw3181_0722 -46 4 AAACTAGATCCATGTCACACAT
Shewanella sp ANA-3 Shewana3_3509 -46 4.3 AAATTAGATCCATGTCACACAT
Shewanella sp MR-4 Shewmr4_3339 -46 4.3 AAATTAGATCCATGTCACACAT
Shewanella sp MR-7 Shewmr7_0614 -46 4.3 AAATTAGATCCATGTCACACAT
Shewanella baltica OS155 Sbal_0609 -46 4.3 AAATTAGATCCATGTCACACAT
Shewanella frigidimarina NCIMB 400 Sfri_3173 -45 4.2 AATTTAGATCTATGTCACAAAC
Shewanella amazonensis SB2B Sama_0672 -46 3.8 TTTGAGGATCTACCTCACAAAT
Shewanella loihica PV-4 Shew_0867 -47 4.5 AATCTAGATCTATATCACATAA
Shewanella halifaxensis HAW-EB4 Shal_0903 -46 3.9 AAGATGGATCTGAATCACAAAA
Shewanella piezotolerans WP3 swp_4100 -46 3.9 AAAACAGATCTAAATCACAAAA
Shewanella sediminis HAW-EB3 Ssed_0952 -136 4.1 TTTATTGATGTAGAACAAAAAT
Shewanella woodyi ATCC 51908 Swoo_1002 -47 3.8 AATGTAGACCTACATCACAAAA
Position: -130
Score: 3.8
Sequence: TACTATGATCTGCTTCTGATTT
Locus tag: KT99_08813
KT99_08813 -130 3.8 TACTATGATCTGCTTCTGATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: petA
Ortholog function: ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)
Shewanella oneidensis MR-1 SO0608 -132 3.7 CACTATGATCTGCTTCTAATTT
-103 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella putrefaciens CN-32 Sputcn32_3276 -130 3.7 CACTATGATCTGCTTCTAATTT
-101 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella sp W3-18-1 Sputw3181_0665 -130 3.7 CACTATGATCTGCTTCTAATTT
-101 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella sp ANA-3 Shewana3_0601 -132 3.7 CACTATGATCTGCTTCTAATTT
-103 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella sp MR-4 Shewmr4_0602 -132 3.7 CACTATGATCTGCTTCTAATTT
-103 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella sp MR-7 Shewmr7_3428 -132 3.7 CACTATGATCTGCTTCTAATTT
-103 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella baltica OS155 Sbal_0562 -131 3.7 CACTATGATCTGCTTCTAATTT
-102 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella frigidimarina NCIMB 400 Sfri_3307 -129 3.8 CACTATGATCTGGTTCTAATTT
Shewanella loihica PV-4 Shew_0570 -130 4.1 TACTATGATCTGCTTCTAATTT
-101 3.9 TAATGAGCCCCGCCTCAAATTT
Shewanella pealeana ATCC 700345 Spea_3536 -78 4.2 AACTATGATCTGGTTCTAATTT
Shewanella halifaxensis HAW-EB4 Shal_3630 -128 4.6 AACTATGATCTGGCTCAAATTT
Shewanella piezotolerans WP3 swp_0793 -131 4.2 AACTATGATCTGGTTCTAATTT
Shewanella sediminis HAW-EB3 Ssed_0801 -132 4.4 TACTATGATCAAGCTCAAATTT
Shewanella woodyi ATCC 51908 Swoo_4166 -129 3.8 TACTATGATCTGCTTCTGATTT
Position: -140
Score: 4
Sequence: AACTGGTATTTTAATCACATTT
Locus tag: KT99_08853
KT99_08853 -140 4 AACTGGTATTTTAATCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: astC
Ortholog function: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Shewanella oneidensis MR-1 SO0617 -142 4 AACTGGTATTTTGATCACAATT
Shewanella putrefaciens CN-32 Sputcn32_0645 -142 4.1 AACTGGTATTTTGATCACATTT
Shewanella sp W3-18-1 Sputw3181_3529 -142 4.1 AACTGGTATTTTGATCACATTT
Shewanella sp ANA-3 Shewana3_0610 -142 4 AACTGGTATTTTGATCACAATT
Shewanella sp MR-4 Shewmr4_0611 -142 4 AACTGGTATTTTGATCACAATT
Shewanella sp MR-7 Shewmr7_3419 -308 3.8 AATTGTGTAGTTATTCATATTC
Shewanella baltica OS155 Sbal_0571 -142 4.1 AACTGGTATTTTGATCACATTT
Shewanella denitrificans OS217 Sden_3193 -136 4.1 AACTGGTATTTTGATCACATTT
Shewanella frigidimarina NCIMB 400 Sfri_3299 -137 4.1 AACTGGTATTTTGATCACATTT
Shewanella amazonensis SB2B Sama_3011 -142 4 AACTGGTATTTCGATCACAATT
Shewanella loihica PV-4 Shew_0578 -140 3.8 AACTGGTATTTTGATCACGTTT
Shewanella pealeana ATCC 700345 Spea_3516 -138 4.1 AACTGGTATTTTGATCACATTT
Shewanella halifaxensis HAW-EB4 Shal_3610 -138 3.7 AACTGGCATTCTGATCACATTT
Shewanella piezotolerans WP3 swp_0747 -140 4.1 AACTGGTATTTTGATCACATTT
Shewanella sediminis HAW-EB3 Ssed_0809 -141 4.1 AACTGGTATTTTGATCACATTT
-121 3.9 TTTCGTTATTAATGTCACTTAA
Shewanella woodyi ATCC 51908 Swoo_0655 -172 4.3 ATATGTGCTGCTGATCTTATTT
Position: -192
Score: 3.7
Sequence: ATATTTAATGCAAGTTACACTA
Position: -163
Score: 4.2
Sequence: AAACGTGAGATTACTCACTATT
Locus tag: KT99_04629
KT99_04629 -192 3.7 ATATTTAATGCAAGTTACACTA
-163 4.2 AAACGTGAGATTACTCACTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: icd
Ortholog function: Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)
Shewanella oneidensis MR-1 SO1538 -149 4.7 ATTCGTGATATTGCTCACTATT
Shewanella putrefaciens CN-32 Sputcn32_1286 -148 4.7 AATCGTGATATCGCTCACTATT
Shewanella sp W3-18-1 Sputw3181_2820 -148 4.7 AATCGTGATATCGCTCACTATT
Shewanella sp ANA-3 Shewana3_2890 -149 4.7 AATCGTGATATTGCTCACTATT
Shewanella sp MR-4 Shewmr4_2720 -149 4.7 AATCGTGATATTGCTCACTATT
Shewanella sp MR-7 Shewmr7_2791 -149 4.7 AATCGTGATATTGCTCACTATT
Shewanella baltica OS155 Sbal_1368 -149 4.7 AATCGTGATATTGCTCACTATT
Shewanella denitrificans OS217 Sden_2561 -143 3.8 AAAAGGGATATTTCTCACTAAT
Shewanella frigidimarina NCIMB 400 Sfri_2779 -148 4.7 TAATGTGATAATACTCACTATT
Shewanella amazonensis SB2B Sama_2423 -89 4.5 AATCGAGACATAAATCACATAA
Shewanella loihica PV-4 Shew_2760 -150 4.4 AAACGTGAGATTGCTCACTATT
Shewanella pealeana ATCC 700345 Spea_2980 -146 4.2 AAACGTGAGATCGCTCACTCTT
Shewanella halifaxensis HAW-EB4 Shal_3069 -149 4.4 AAACGTGAGATTGCTCACTATT
Shewanella piezotolerans WP3 swp_3606 -293 4.6 AAACGTGAGATTGCTCACCTTT
Shewanella sediminis HAW-EB3 Ssed_3318 -151 4.7 AAATGTGAGATTGCTCACTATT
Shewanella woodyi ATCC 51908 Swoo_3466 -148 4.3 AAACGTGAGACTGCTCACTATT
Position: -82
Score: 4.7
Sequence: TAATGTGAACCCCGTCACATAG
Locus tag: KT99_14990
KT99_14990 -82 4.7 TAATGTGAACCCCGTCACATAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2806
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1 SO2806 -95 4.3 TCTTGTGAATTGAGTCACATAG
Shewanella putrefaciens CN-32 Sputcn32_1554 -95 4 TCTTGTGAATTGAGTCACAGAG
Shewanella sp W3-18-1 Sputw3181_2545 -95 4 TCTTGTGAATTGAGTCACAGAG
Shewanella sp ANA-3 Shewana3_2588 -95 4 TCTTGTGAATTGAGTCACAGAG
Shewanella sp MR-4 Shewmr4_2426 -95 4 TCTTGTGAATTGAGTCACAGAG
Shewanella sp MR-7 Shewmr7_2496 -95 4 TCTTGTGAATTGAGTCACAGAG
Shewanella baltica OS155 Sbal_1679 -94 4.2 ATCTGTGAATTAAGTCACACAG
Shewanella denitrificans OS217 Sden_1453 -35 3.9 ATATTTTATGCCGTTCACTCAT
Shewanella amazonensis SB2B Sama_1287 -85 4 AATTGTGAAGCCAGTCACGGTG
Shewanella pealeana ATCC 700345 Spea_1483 -84 4.4 AATTGTGAATAACGTCACACAG
Shewanella halifaxensis HAW-EB4 Shal_1567 -84 4.7 AATTGTGAACAACATCACACAG
Shewanella piezotolerans WP3 swp_1689 27 4.3 AACTGTGAAAGGTATCACACAC
Shewanella sediminis HAW-EB3 Ssed_2877 -82 4.5 TAATGTGAATGGCGTCACACAG
Shewanella woodyi ATCC 51908 Swoo_1771 -81 4.6 TATTGTGAAAGTCATCACACAG
Position: -162
Score: 4.7
Sequence: AAAAGTGATTTAGATCGCGTTT
Locus tag: KT99_15070
KT99_15070 -162 4.7 AAAAGTGATTTAGATCGCGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3119
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1 SO3119 -166 4.5 AATAGTGATAAAGATCGCGTTT
Shewanella putrefaciens CN-32 Sputcn32_2489 -171 4.5 AATAGTGATAAAGATCGCGTTT
Shewanella sp W3-18-1 Sputw3181_1519 -171 4.5 AATAGTGATAAAGATCGCGTTT
Shewanella sp ANA-3 Shewana3_1429 -171 4.5 AATAGTGATAAAGATCGCGTTT
Shewanella sp MR-4 Shewmr4_1376 -171 4.5 AATAGTGATAAAGATCGCGTTT
Shewanella sp MR-7 Shewmr7_1441 -171 4.5 AATAGTGATAAAGATCGCGTTT
Shewanella baltica OS155 Sbal_2792 -171 4.5 AATAGTGATAAAGATCGCGTTT
Shewanella amazonensis SB2B Sama_2198 -151 4.4 AATAGTGATTAAGCTCGCGTTT
Shewanella pealeana ATCC 700345 Spea_1466 -148 4.1 GAAAGTGATTTATATCGCGTTT
Shewanella halifaxensis HAW-EB4 Shal_1549 -148 4.1 GAAAGTGATTTATATCGCGTTT
Shewanella piezotolerans WP3 swp_1671 -220 3.8 GAAAGTGACTTAAATCGCGTTT
Shewanella sediminis HAW-EB3 Ssed_2897 -173 4.7 TAAAGTGATTTAGATCGCGTTT
Shewanella woodyi ATCC 51908 Swoo_1750 -148 4.4 TTAAGTGACTTAGATCGCGTTT
Position: -77
Score: 4.5
Sequence: AACTGTGAGGGAGTTAACAAAA
Locus tag: KT99_15225
KT99_15225 -77 4.5 AACTGTGAGGGAGTTAACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: phhA
Ortholog function: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Shewanella oneidensis MR-1 SO1666 -75 4.5 AACTGTGAGGGAGTTAACAAAA
Shewanella putrefaciens CN-32 Sputcn32_1386 -75 4.7 AAGTGTGAGGGAGTTAACAAAA
Shewanella sp W3-18-1 Sputw3181_2715 -75 4.7 AAGTGTGAGGGAGTTAACAAAA
Shewanella sp ANA-3 Shewana3_2781 -75 4.5 AACTGTGAGGGAGTTAACAAAA
Shewanella sp MR-4 Shewmr4_2607 -75 4.5 AACTGTGAGGGAGTTAACAAAA
Shewanella sp MR-7 Shewmr7_2674 -75 4.5 AACTGTGAGGGAGTTAACAAAA
Shewanella baltica OS155 Sbal_1484 -75 4.7 AAGTGTGAGGGAGTTAACAAAT
Shewanella denitrificans OS217 Sden_2595 -61 4.1 AATTGTGCGCCATGGCACACTA
Shewanella frigidimarina NCIMB 400 Sfri_1328 -74 4.5 AACTGTGAGGGAGTTAACAAAA
Shewanella amazonensis SB2B Sama_2222 -76 4.6 AAACGTGAGGCAGTTAACAAAA
Shewanella loihica PV-4 Shew_1435 -40 4.7 AAGTGTGATCCTGTTAACAAAC
Shewanella pealeana ATCC 700345 Spea_1448 -126 4.9 AACTGTGATCGGGTTAACAATT
Shewanella halifaxensis HAW-EB4 Shal_1531 -86 4.7 AACCGTGATCTAGTTAACAAAA
Shewanella piezotolerans WP3 swp_1650 -76 5 AACTGTGATCTGGTTAACAAAA
Shewanella sediminis HAW-EB3 Ssed_2930 -75 4.8 AACTGTGATGGAGTTAACAAAA
Shewanella woodyi ATCC 51908 Swoo_1715 -74 4.7 AAGTGTGAAGTGGTTAACAAAA
Position: -150
Score: 4.2
Sequence: AAGTGTGATCCAGCTTGTATTT
Locus tag: KT99_01811
KT99_01811 -150 4.2 AAGTGTGATCCAGCTTGTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hutC
Ortholog function: histidine utilization repressor
Shewanella oneidensis MR-1 SO0096 -151 4.1 TTATGTGAGCTAGCTTGTATTT
Shewanella putrefaciens CN-32 Sputcn32_0078 -178 4.1 TTATGTGAGCTGGCTTGTATTT
Shewanella sp W3-18-1 Sputw3181_3999 -178 4.1 TTATGTGAGCTGGCTTGTATTT
Shewanella sp ANA-3 Shewana3_0099 -142 4.1 TTATGTGAGCTAGCTTGTATTT
Shewanella sp MR-4 Shewmr4_0098 -142 4.1 TTATGTGAGCCAGCTTGTATTT
Shewanella sp MR-7 Shewmr7_0093 -142 4.1 TTATGTGAGCTAGCTTGTATTT
Shewanella baltica OS155 Sbal_4253 -177 4.1 TTATGTGAGCTAGCTTGTATTT
Shewanella loihica PV-4 Shew_3758 -138 4.1 TTATGTGAGCTAGCTTGTATTT
Shewanella pealeana ATCC 700345 Spea_4170 -106 3.8 ATTTGTGAGCTAGCTTGTGTTT
Shewanella halifaxensis HAW-EB4 Shal_0072 -106 3.9 ATTTGTGAGCCCGCTTGTATTT
Shewanella piezotolerans WP3 swp_0132 -177 4.2 ATTTGTGAGCTAGCTTGTATTT
Shewanella sediminis HAW-EB3 Ssed_4448 -150 4.1 AGTTGTGATCCAACTTGTATTT
Shewanella woodyi ATCC 51908 Swoo_4839 -201 4.1 AAGTGTGATCCAACTTGTATTT
Position: -96
Score: 3.6
Sequence: TAATGAGAGAGATCACGCATTA
Locus tag: KT99_01906
KT99_01906 -96 3.6 TAATGAGAGAGATCACGCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4503
Ortholog function: formate dehydrogenase chain D (EC 1.2.1.2)
Shewanella putrefaciens CN-32 Sputcn32_0343 -187 4 AAGTTTGAAGTAGATCATCAAA
-91 4.1 AATTGCGATAGATCACGCATTT
Shewanella sp W3-18-1 Sputw3181_3865 -131 4 AAGTTTGAAGTAGATCATCAAA
-35 4.1 AATTGCGATAGATCACGCATTT
Shewanella sp ANA-3 Shewana3_3910 -187 4 TTGTTTGAGGTGGATCATCAAA
-91 4 AATTGCGACGGATCACGCATTT
Shewanella sp MR-4 Shewmr4_3714 -187 4 TTGTTTGAGGTGGATCATCAAA
-91 4 AATTGCGACGGATCACGCATTT
Shewanella sp MR-7 Shewmr7_3785 -187 4 TTGTTTGAGGTGGATCATCAAA
-91 4 AATTGCGACGGATCACGCATTT
Shewanella baltica OS155 Sbal_4130 -187 4 TAGTTTGAACTAGATCATCAAA
Shewanella frigidimarina NCIMB 400 Sfri_0051 -139 3.7 AGATTTGCGCCAGATCACGCTT
Shewanella amazonensis SB2B Sama_3619 -186 3.9 AAGTTTGAAGTGGATCATCAAA
Shewanella loihica PV-4 Shew_0053 -190 4 TAGTTTGAACTGGATCATCAAA
Shewanella pealeana ATCC 700345 Spea_4143 -183 4.2 TAGTTTGAACTAGATCAACTAT
-87 3.9 AAGTGTGATCGACCACTAACTT
-20 3.9 TTGCGTGACAAGGATAAAAAAT
Shewanella halifaxensis HAW-EB4 Shal_0099 -181 4.2 TAGTTTGAACTAGATCAACTAT
-85 4.5 AAATGTGATCTACTACTAATTT
Shewanella piezotolerans WP3 swp_5036 -86 4.2 AAGTGTGATCTGCAGCTAACTT
-25 4 AAAGGTAATTGAAATCTCATAA
Shewanella sediminis HAW-EB3 Ssed_4427 -153 3.9 TAACTTGAGCTGGATCATCAAT
-59 3.8 TTAAATGAGAGAGATCACGCAT
Shewanella woodyi ATCC 51908 Swoo_4819 -163 4.3 TTTTTTGAGCTAGATCATCAAA
Position: -181
Score: 3.9
Sequence: AAACATGACTGGCTTAACAAAA
Locus tag: KT99_01971
KT99_01971 -181 3.9 AAACATGACTGGCTTAACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4520
Ortholog function: Oxygen-independent coproporphyrinogen III oxidase, putative
Shewanella oneidensis MR-1 SO4520 -172 4.4 AAACATGATCTGCTTAACAAAA
Shewanella putrefaciens CN-32 Sputcn32_3506 -172 4.4 AAACATGATCTGCTTAACAAAA
Shewanella sp W3-18-1 Sputw3181_0400 -172 4.4 AAACATGATCTGCTTAACAAAA
Shewanella sp ANA-3 Shewana3_3926 -172 4.4 AAACATGATCTGCTTAACAAAA
Shewanella sp MR-4 Shewmr4_3730 -172 4.4 AAACATGATCTGCTTAACAAAA
Shewanella sp MR-7 Shewmr7_3801 -172 4.4 AAACATGATCTGCTTAACAAAA
Shewanella baltica OS155 Sbal_0219 -172 4.4 AAACATGATCTGCTTAACAAAA
Shewanella frigidimarina NCIMB 400 Sfri_0076 -182 4.4 AAACATGATCTGCTTAACAAAT
Shewanella amazonensis SB2B Sama_3604 -171 3.9 AAATATGCGCTGCTTAACAAAA
Shewanella loihica PV-4 Shew_0073 -182 4.1 AAACATGACATGCTTAACAATT
Shewanella pealeana ATCC 700345 Spea_4126 -164 4.4 AAGTATGATCCGCTTAACAAAA
Shewanella halifaxensis HAW-EB4 Shal_0116 -164 4.2 AAGTATGACCCGCTTAACAAAA
Shewanella piezotolerans WP3 swp_5018 -166 4.2 AAGTATGACTTACTTAACAAAA
Shewanella sediminis HAW-EB3 Ssed_4414 -203 4 AAACATGACTTGCTTAACAAAA
Shewanella woodyi ATCC 51908 Swoo_4806 -184 4 AAACATGACTCGCTTAACAAAA
Position: -2
Score: 3.7
Sequence: TTATGTGTGCTCGAGCAGATAA
Locus tag: KT99_02061
KT99_02061 -2 3.7 TTATGTGTGCTCGAGCAGATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: modC
Ortholog function: molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)
Shewanella oneidensis MR-1 SO4446 -220 3.8 TTGGGTGAGCACTGTCACAGAT
Shewanella putrefaciens CN-32 Sputcn32_0395 -187 3.8 TTGGGTGAGGACTGTCACAGAT
Shewanella sp W3-18-1 Sputw3181_0249 -187 3.8 TTGGGTGAGGACTGTCACAGAT
Shewanella sp ANA-3 Shewana3_0280 -187 3.8 TTGGGTGAGCACTGTCACAGAT
Shewanella sp MR-4 Shewmr4_0279 -187 3.9 TTGGGTGAGCGCTGTCACAGTT
Shewanella sp MR-7 Shewmr7_3742 -187 3.9 TTGGGTGAGCGCTGTCACAGTT
Shewanella denitrificans OS217 Sden_0107 -186 4.3 TGAGGTGAGCTGTGTCACAAAA
Shewanella frigidimarina NCIMB 400 Sfri_0088 -186 4.5 TAGCGTGAGTCGAGTCACAAAT
Shewanella amazonensis SB2B Sama_3531 -180 4 CTGAGTGAGCGGCGTCACAATT
Shewanella pealeana ATCC 700345 Spea_4113 -222 4.1 TGCCGTGATAACTGTCACAAAA
Shewanella sediminis HAW-EB3 Ssed_4395 -221 4.4 GTATGTGAGGGGTGTCACAAAA
Shewanella woodyi ATCC 51908 Swoo_4786 -222 4.3 GAATGTGAGTGTCGTCACAAAA
Position: -302
Score: 3.9
Sequence: TTTAGTGAACACGTTAACCTTA
Position: -268
Score: 3.8
Sequence: TTAAGTTACTTCCTCCACATTT
Position: -145
Score: 3.9
Sequence: TTTAGTGACCTAGATTAGACTT
Locus tag: KT99_02136
KT99_02136 -302 3.9 TTTAGTGAACACGTTAACCTTA
-268 3.8 TTAAGTTACTTCCTCCACATTT
-145 3.9 TTTAGTGACCTAGATTAGACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0141
Ortholog function: sensory box/GGDEF family protein
Shewanella oneidensis MR-1 SO0141 -161 4.1 TTTCGTGAGCTAGATTAGATAT
Shewanella putrefaciens CN-32 Sputcn32_0133 -174 4.2 TTTCGTGACCTAGATTAGATAT
Shewanella sp W3-18-1 Sputw3181_3939 -174 4.2 TTTCGTGACCTAGATTAGATAT
Shewanella sp ANA-3 Shewana3_0133 -163 4.1 TTTCGTGAGCTAGATTAGATAT
Shewanella sp MR-4 Shewmr4_0134 -161 4.1 TTTCGTGAGCTAGATTAGATAT
Shewanella sp MR-7 Shewmr7_0128 -161 4.1 TTTCGTGAGCTAGATTAGATAT
Shewanella baltica OS155 Sbal_4220 -160 4.2 TTTCGTGACCTAGATTAGATAT
Shewanella baltica OS155 Sbal_4221 -160 4.2 TTTCGTGACCTAGATTAGATAT
Shewanella amazonensis SB2B Sama_0142 -137 4.6 TTTTGTGATGTGGATTAGAAAT
Shewanella loihica PV-4 Shew_0041 -55 4 TTTCGTGACCTAGATTAGACTT
Shewanella piezotolerans WP3 swp_0168 -156 4 ATTCGTGACCTAGATTAGACTT
Shewanella sediminis HAW-EB3 Ssed_4373 -198 3.7 ATCATTGATAAATATAACAAAA
Shewanella woodyi ATCC 51908 Swoo_4765 -240 4 AATCGTGACTTAGATTAGACTT
Position: -154
Score: 5.2
Sequence: AAAAGTGATCTTCCTCACATAT
Locus tag: KT99_02211
KT99_02211 -154 5.2 AAAAGTGATCTTCCTCACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pckA
Ortholog function: phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
Shewanella oneidensis MR-1 SO0162 -150 3.8 CTCAATGATCCAGCTCACACTT
Shewanella putrefaciens CN-32 Sputcn32_3571 -151 4 CACCATGATCCAGTTCACACTT
Shewanella sp W3-18-1 Sputw3181_3708 -151 4 CACCATGATCCAGTTCACACTT
Shewanella sp ANA-3 Shewana3_0147 -151 3.8 CTCAATGATCCAGCTCACACTT
Shewanella sp MR-4 Shewmr4_0152 -149 3.8 CTCAATGATCCAGCTCACACTT
Shewanella sp MR-7 Shewmr7_0147 -149 3.8 CTCAATGATCCAGCTCACACTT
Shewanella amazonensis SB2B Sama_0165 -145 4.1 TTTTCAGATCCGGCTCACACAT
Shewanella loihica PV-4 Shew_3623 -128 4.6 TTTCGCGATCTTCCTCACACAT
Shewanella pealeana ATCC 700345 Spea_0140 -112 4.9 TTTTTTGATCTAGTACACATAT
Shewanella halifaxensis HAW-EB4 Shal_4178 -112 4.8 TTTTTTGATCTTGCCCACATAT
Shewanella piezotolerans WP3 swp_0182 -113 4.9 TTTTTTGATCTAGTCCACATAT
Shewanella sediminis HAW-EB3 Ssed_4362 -142 4.1 AAACACGATCTTCCTCACACAT
Shewanella woodyi ATCC 51908 Swoo_4740 -100 3.8 AATCGTGACATAGCGCAAAGAC
Position: -129
Score: 4.6
Sequence: TTGTGTGAGCCACTTCACGCAA
Locus tag: KT99_17011
KT99_17011 -129 4.6 TTGTGTGAGCCACTTCACGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3552
Ortholog function: Von Willebrand factor type A domain protein
Shewanella oneidensis MR-1 SO3552 -152 4.1 TTGTGTGATCATAGTTGCAAAA
Shewanella putrefaciens CN-32 Sputcn32_1043 -143 4 CTGTGTGATCATGATTGCAAAT
Shewanella sp W3-18-1 Sputw3181_3122 -143 4 CTGTGTGATCATGATTGCAAAT
Shewanella sp ANA-3 Shewana3_3153 -165 4.1 TTGTGTGATCATAGTTGCAAAA
Shewanella sp MR-4 Shewmr4_2973 -165 4.4 TTGTGTGATCATAGTTACAAAA
Shewanella sp MR-7 Shewmr7_3055 -165 4.4 TTGTGTGATCATAGTTACAAAA
Shewanella baltica OS155 Sbal_1038 -126 3.8 CAGTGTGATCTTGTCAGCAAAA
Position: -80
Score: 4.6
Sequence: TTGCGTGAAGTGGCTCACACAA
Locus tag: KT99_17016
KT99_17016 -80 4.6 TTGCGTGAAGTGGCTCACACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3553
Ortholog function: putative sulfate permease
Shewanella oneidensis MR-1 SO3553 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella oneidensis MR-1 SO3553 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella oneidensis MR-1 SO3553 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella putrefaciens CN-32 Sputcn32_1042 -81 4 ATTTGCAATCATGATCACACAG
Shewanella putrefaciens CN-32 Sputcn32_1042 -81 4 ATTTGCAATCATGATCACACAG
Shewanella putrefaciens CN-32 Sputcn32_1042 -81 4 ATTTGCAATCATGATCACACAG
Shewanella sp W3-18-1 Sputw3181_3123 -81 4 ATTTGCAATCATGATCACACAG
Shewanella sp W3-18-1 Sputw3181_3123 -81 4 ATTTGCAATCATGATCACACAG
Shewanella sp W3-18-1 Sputw3181_3123 -81 4 ATTTGCAATCATGATCACACAG
Shewanella sp ANA-3 Shewana3_3154 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella sp ANA-3 Shewana3_3154 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella sp ANA-3 Shewana3_3154 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella sp MR-4 Shewmr4_2974 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella sp MR-4 Shewmr4_2974 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella sp MR-4 Shewmr4_2974 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella sp MR-7 Shewmr7_3056 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella sp MR-7 Shewmr7_3056 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella sp MR-7 Shewmr7_3056 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella baltica OS155 Sbal_1037 -139 3.8 TGATATGAAATTGTTCGCAGTT
-95 4.1 TTTCGTTATATACTTAACAGAA
Shewanella frigidimarina NCIMB 400 Sfri_3674 -116 4.5 TAATGTGATGATAATTATATTA
Shewanella frigidimarina NCIMB 400 Sfri_3674 -116 4.5 TAATGTGATGATAATTATATTA
Shewanella frigidimarina NCIMB 400 Sfri_3674 -116 4.5 TAATGTGATGATAATTATATTA
Shewanella amazonensis SB2B Sama_1067 -82 4.1 AAATTTGCCAAAGCTCACACAT
Shewanella amazonensis SB2B Sama_1067 -82 4.1 AAATTTGCCAAAGCTCACACAT
Shewanella amazonensis SB2B Sama_1067 -82 4.1 AAATTTGCCAAAGCTCACACAT
Shewanella sediminis HAW-EB3 Ssed_1334 -233 4.1 GTAAGTGCTACGCATCACATTT
Shewanella sediminis HAW-EB3 Ssed_1334 -233 4.1 GTAAGTGCTACGCATCACATTT
Shewanella sediminis HAW-EB3 Ssed_1334 -233 4.1 GTAAGTGCTACGCATCACATTT
Shewanella woodyi ATCC 51908 Swoo_3320 -288 3.7 TCCAGCGACTTAGATCACATTT
Shewanella woodyi ATCC 51908 Swoo_3320 -288 3.7 TCCAGCGACTTAGATCACATTT
Position: 25
Score: 3.7
Sequence: TGATGGGATCTGATTCTGATTT
Locus tag: KT99_17021
KT99_17021 25 3.7 TGATGGGATCTGATTCTGATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: purE
Ortholog function: phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
Shewanella oneidensis MR-1 SO3554 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella oneidensis MR-1 SO3554 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella putrefaciens CN-32 Sputcn32_1041 -81 4 ATTTGCAATCATGATCACACAG
Shewanella putrefaciens CN-32 Sputcn32_1041 -81 4 ATTTGCAATCATGATCACACAG
Shewanella sp W3-18-1 Sputw3181_3124 -81 4 ATTTGCAATCATGATCACACAG
Shewanella sp W3-18-1 Sputw3181_3124 -81 4 ATTTGCAATCATGATCACACAG
Shewanella sp ANA-3 Shewana3_3155 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella sp ANA-3 Shewana3_3155 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella sp MR-4 Shewmr4_2975 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella sp MR-4 Shewmr4_2975 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella sp MR-7 Shewmr7_3057 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella sp MR-7 Shewmr7_3057 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella baltica OS155 Sbal_1036 -139 3.8 TGATATGAAATTGTTCGCAGTT
-95 4.1 TTTCGTTATATACTTAACAGAA
Shewanella denitrificans OS217 Sden_1224 -315 3.7 AATTCTGACTCATCTTAAATTA
Shewanella amazonensis SB2B Sama_1064 -82 4.1 AAATTTGCCAAAGCTCACACAT
Shewanella amazonensis SB2B Sama_1064 -82 4.1 AAATTTGCCAAAGCTCACACAT
Shewanella halifaxensis HAW-EB4 Shal_1245 -269 4.4 TTGTGGGATCTAGGTAACATTT
Shewanella halifaxensis HAW-EB4 Shal_1245 -269 4.4 TTGTGGGATCTAGGTAACATTT
Shewanella halifaxensis HAW-EB4 Shal_1245 -269 4.4 TTGTGGGATCTAGGTAACATTT
Shewanella sediminis HAW-EB3 Ssed_1333 -217 3.8 TATTGTGAAGTCATCCGGATAT
Shewanella woodyi ATCC 51908 Swoo_3321 -288 3.7 TCCAGCGACTTAGATCACATTT
Position: -134
Score: 4.5
Sequence: AAGTGTGATCTAAATCTAATTG
Locus tag: KT99_17441
KT99_17441 -134 4.5 AAGTGTGATCTAAATCTAATTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: deoA
Ortholog function: thymidine phosphorylase (EC 2.4.2.4)
Shewanella oneidensis MR-1 SO1218 -135 3.9 AAGTGTGACCTAAATCTAGTTG
Shewanella putrefaciens CN-32 Sputcn32_2821 -136 3.7 AAGTGTGACCTAAATCTATTTG
Shewanella sp W3-18-1 Sputw3181_1190 -136 3.7 AAGTGTGACCTAAATCTATTTG
Shewanella sp ANA-3 Shewana3_1042 -135 3.9 AAGTGTGACCTAAATCTAGTTG
Shewanella sp MR-4 Shewmr4_1038 -135 3.9 AAGTGTGACCTAAATCTAGTTG
Shewanella sp MR-7 Shewmr7_1103 -135 3.9 AAGTGTGACCTAAATCTAGTTG
Shewanella baltica OS155 Sbal_3226 -136 3.7 AAGTGTGACCTAAATCTATTTG
Shewanella amazonensis SB2B Sama_0974 -135 3.9 ATTTGTGATCCGCGTCGAAACG
Shewanella loihica PV-4 Shew_2814 -133 4 AAGTGTGATCTAAATCTATTTG
Shewanella pealeana ATCC 700345 Spea_3047 -138 4.8 AAGTGTGATCTAAATCTAATTA
Shewanella halifaxensis HAW-EB4 Shal_3135 -138 4.8 AAGTGTGATCTAAATCTAATTA
Shewanella piezotolerans WP3 swp_1230 -139 4.8 AAGTGTGATCTAAATCTAATTA
Shewanella sediminis HAW-EB3 Ssed_3377 -134 4 AAGTGTGATCTAAATCTATTTG
Shewanella woodyi ATCC 51908 Swoo_3548 -157 4.2 AAGTGTGATCTAAATCTAGTTG
Position: -282
Score: 4.7
Sequence: ATATGTGATCGTAATCTCGATT
Locus tag: KT99_20536
KT99_20536 -282 4.7 ATATGTGATCGTAATCTCGATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3588
Ortholog function: gpr1/fun34/yaaH family protein
Shewanella putrefaciens CN-32 Sputcn32_1014 -312 4.1 AATTTTGAACCAATGCAAATAT
-44 4.3 TATTTTGATTTTAATCAATTTA
Shewanella sp W3-18-1 Sputw3181_3151 -312 4.1 AATTTTGAACCAATGCAAATAT
-44 4.3 TATTTTGATTTTAATCAATTTA
Shewanella sp ANA-3 Shewana3_3180 -117 4.2 TATTTTGATTGTGATCTCTTTA
Shewanella sp MR-4 Shewmr4_3002 -292 3.8 AAGTTTGAACCTTAGCAAAATT
Shewanella sp MR-7 Shewmr7_3083 -292 3.8 AAGTTTGAACCTTAGCAAAATT
Shewanella frigidimarina NCIMB 400 Sfri_3630 -313 3.8 TTTTGAGACTTATCACACCAAT
Shewanella loihica PV-4 Shew_0904 -97 4.4 TATTGTGATGCCCTTAAGACTT
Shewanella pealeana ATCC 700345 Spea_0890 -246 3.8 TGGCGTGACGTGTGTCACTCTT
Shewanella woodyi ATCC 51908 Swoo_1050 -309 3.9 TTGTGTGATAAGGGTCTTGTTT
-206 3.9 TTATGTGATGAATGATTCATTT
Position: -50
Score: 4.1
Sequence: AAAATTGATCTAGATCAATAAA
Locus tag: KT99_10283
KT99_10283 -50 4.1 AAAATTGATCTAGATCAATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2010
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1 SO2010 -70 4.7 TTTTGTGATCTTCGTCACTGTA
Shewanella putrefaciens CN-32 Sputcn32_2305 -65 5.1 TTTTGTGATCTCCATCACCGTT
Shewanella sp W3-18-1 Sputw3181_1703 -65 5.1 TTTTGTGATCTCCATCACCGTT
Shewanella sp MR-4 Shewmr4_2257 -65 4.9 TTTTGTGATCTTAATCACTGTA
Shewanella sp MR-7 Shewmr7_2329 -65 4.9 TTTTGTGATCTTAATCACTGTA
Shewanella baltica OS155 Sbal_2577 -65 5 TTTTGTGATCTAAATCACTGTA
Shewanella denitrificans OS217 Sden_2384 -81 4.8 AAATGTGATCCAGCTCAGCTTT
Shewanella frigidimarina NCIMB 400 Sfri_2410 -116 4.8 TTTTGTGATCGACTTCACGTCT
Shewanella amazonensis SB2B Sama_1307 -51 4.3 TTTTGTGAGCTGCATCACGGCA
Shewanella loihica PV-4 Shew_2238 -48 4.1 AAAATTGATCTAGATCAATAAA
Shewanella pealeana ATCC 700345 Spea_1505 -51 4.1 AAAATTGATCTAGATCAATAAA
Shewanella halifaxensis HAW-EB4 Shal_1587 -80 4 TAGTGTGATTGATATCTATAAT
Shewanella piezotolerans WP3 swp_1711 -21 4.1 AAAATTGATCTAGATCAATAAA
Shewanella sediminis HAW-EB3 Ssed_2855 -49 4.1 AAAATTGATCTAGATCAATAAA
Shewanella woodyi ATCC 51908 Swoo_1790 -48 4.1 TAAATTGATCTAGATCAATAAA
Position: -323
Score: 4.1
Sequence: ATTTGCGACTCACCTCACCTTG
Locus tag: KT99_06929
KT99_06929 -323 4.1 ATTTGCGACTCACCTCACCTTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0919
Ortholog function: Serine transporter, putative
Shewanella baltica OS155 Sbal_0765 -280 4.1 TTTTGTGATCTAGATCCAATCC
-139 4 ATCAGCGATCTAGATCTCAATA
Shewanella frigidimarina NCIMB 400 Sfri_0688 -146 4.1 ATAGTTGATTCAGAACACATTA
Shewanella pealeana ATCC 700345 Spea_0771 -161 4.2 TTAAGAGATCTAGCTCTCAATT
Shewanella halifaxensis HAW-EB4 Shal_0823 -160 4.3 TTAAGCGATCTAGCTCTCAATT
Position: -117
Score: 4.7
Sequence: TTATGTGATAATCGTCACGATT
Locus tag: KT99_07004
KT99_07004 -117 4.7 TTATGTGATAATCGTCACGATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cadC
Ortholog function: transcriptional regulator-related protein
Shewanella oneidensis MR-1 SO0936 -117 4.6 TTTATTGATGTAATTCACAGAT
Shewanella sp ANA-3 Shewana3_3347 -118 4.6 TTTATTGATGTGTTTCACAGAT
Shewanella sp MR-4 Shewmr4_0779 -118 4.5 TTTATTGATGCATTTCACAGAT
Shewanella sp MR-7 Shewmr7_3244 -118 4.5 TTTATTGATGCATTTCACAGAT
Shewanella loihica PV-4 Shew_0757 -115 4.3 TTATGTGCTGATTGTCACGAAA
Shewanella halifaxensis HAW-EB4 Shal_0849 -117 4.4 TAGTGTGCTAGACCTCACGAAA
Shewanella piezotolerans WP3 swp_4239 -248 4.2 TAACGTGCTAAAGCTCACGAAA
Shewanella sediminis HAW-EB3 Ssed_0879 -117 4.1 TAACGTGTTCCTTGTCACGAAT
Shewanella woodyi ATCC 51908 Swoo_0881 -116 3.7 ATATGAGCGCTAAATCACGCTT
Position: -97
Score: 4.3
Sequence: TAATGTAATTGGAATAACGTAT
Locus tag: KT99_07214
KT99_07214 -97 4.3 TAATGTAATTGGAATAACGTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fkpA
Ortholog function: FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8)
Shewanella oneidensis MR-1 SO1065 -119 4.3 TAGAGTGAAATTAATCACAGTT
Shewanella sp ANA-3 Shewana3_0903 -120 4.4 TAGAGTGAGATTAATCACAGTT
Shewanella sp MR-4 Shewmr4_3034 -120 4.4 TAGAGTGAGATTAATCACAGTT
Shewanella sp MR-7 Shewmr7_0940 -120 4.4 TAGAGTGAGATTAATCACAGTT
Shewanella halifaxensis HAW-EB4 Shal_0881 -99 4.1 TAATCTGATTGGAATAACCTAT
Shewanella sediminis HAW-EB3 Ssed_0918 -96 3.9 CAATGTAATTGGAATAACGTAT
Shewanella woodyi ATCC 51908 Swoo_0968 -95 4.2 TAATGTAATTGGAATATCATAT
Position: -92
Score: 3.7
Sequence: TATTAGGACCGAGAACACAAAT
Locus tag: KT99_05017
KT99_05017 -92 3.7 TATTAGGACCGAGAACACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: map
Ortholog function: methionine aminopeptidase (EC 3.4.11.18)
Shewanella pealeana ATCC 700345 Spea_2886 -104 4.2 TAATTTGAAAAAAAGCACAAAT
Shewanella halifaxensis HAW-EB4 Shal_2982 -92 3.7 TAATATGAAAAAAAGCACAAAC
Shewanella piezotolerans WP3 swp_3524 -93 4.2 TATTTTGAAAAAAAGCACAAAT
Shewanella sediminis HAW-EB3 Ssed_3162 -91 3.9 TATTGAGAGAGCAAACACAAAT
Position: -142
Score: 4.8
Sequence: TAATATGATTTGTATCAAAAAA
Locus tag: KT99_05222
KT99_05222 -142 4.8 TAATATGATTTGTATCAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: etfB
Ortholog function: electron transfer flavoprotein, beta subunit
Shewanella denitrificans OS217 Sden_2539 -175 4.4 TCATATGATTTTCATCACACTT
Shewanella frigidimarina NCIMB 400 Sfri_2748 -153 4.2 TAGTTTGATTGCCACCACAATA
Shewanella pealeana ATCC 700345 Spea_2855 -283 4.1 TATTTGGATAAGGATCAAATAT
Shewanella piezotolerans WP3 swp_3472 -276 3.7 TATTTCAATAAGGATCAAATAT
Shewanella woodyi ATCC 51908 Swoo_3236 -214 4.5 ATTTGTGAATGTACTCATATAT
Position: -60
Score: 4.6
Sequence: TTTTTTGACACCGATCAAATTT
Locus tag: KT99_08003
KT99_08003 -60 4.6 TTTTTTGACACCGATCAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0572
Ortholog function: enoyl-CoA hydratase (EC 4.2.1.17)
Shewanella oneidensis MR-1 SO0572 -102 4.4 TATTTTGACTCAAGTCAAAATT
Shewanella putrefaciens CN-32 Sputcn32_3304 -102 4.3 TATTTTGACTAAGGTCAAAATT
Shewanella sp W3-18-1 Sputw3181_0637 -102 4.3 TATTTTGACTAAGGTCAAAATT
Shewanella sp ANA-3 Shewana3_0572 -102 4.4 TATTTTGACTCATGTCAAAAAT
Shewanella sp MR-4 Shewmr4_0573 -102 4.5 TATTTTGACGCATGTCAAAATT
Shewanella sp MR-7 Shewmr7_3457 -102 4.5 TATTTTGACGCATGTCAAAATT
Shewanella baltica OS155 Sbal_0533 -102 4.3 TATTTTGACTCAAGTCAAAAAA
Shewanella denitrificans OS217 Sden_0534 -100 3.7 ATTTTTGACTAGGGTCAATATT
Shewanella frigidimarina NCIMB 400 Sfri_3510 -237 4.2 CATTGTGATCAATGTCATATCA
Shewanella loihica PV-4 Shew_0454 -124 4.3 TATTTTGACGCCAGTCAAAAAA
Shewanella pealeana ATCC 700345 Spea_3709 -110 3.7 AAAAATGACCAATGTCATAATT
Shewanella halifaxensis HAW-EB4 Shal_3794 -110 3.9 TAAAATGATGAGTGTCATAATT
Shewanella piezotolerans WP3 swp_0563 -110 3.6 TTTATTGACGATAGTCAAAAAA
Shewanella sediminis HAW-EB3 Ssed_0623 -108 4.1 TTTTTTGACTGAAGTCAAACTT
Position: -201
Score: 3.8
Sequence: TGTTGTGAGTTTGGTCATGGAA
Locus tag: KT99_15977
KT99_15977 -201 3.8 TGTTGTGAGTTTGGTCATGGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cydA
Ortholog function: cytochrome d ubiquinol oxidase, subunit I, CydA
Shewanella oneidensis MR-1 SO3286 -203 4.2 TAGTGTGACTAGGGTCTCAGTA
Shewanella putrefaciens CN-32 Sputcn32_2641 -204 4.3 TAGTGTGACGCTTGTCCCAATA
Shewanella sp W3-18-1 Sputw3181_1366 -204 4.3 TAGTGTGACGCTTGTCCCAATA
Shewanella sp ANA-3 Shewana3_1241 -203 4.2 TAGTGTGACTAGGGTCTCAGTA
Shewanella sp MR-4 Shewmr4_1239 -203 4.2 TAGTGTGACTAGGGTCTCAGTA
Shewanella sp MR-7 Shewmr7_1310 -203 4.2 TAGTGTGACTAGGGTCTCAGTA
Shewanella baltica OS155 Sbal_2979 -207 4.4 TAGTGTGACTCGCGTCTCAATA
Shewanella denitrificans OS217 Sden_1274 -157 4.1 TAAATTGATCTAAATCAATTTA
Shewanella frigidimarina NCIMB 400 Sfri_1142 -240 4.2 AAATCTAATGCTGGTCACATAA
Shewanella loihica PV-4 Shew_1302 -206 4.7 TTTTGTGAGCCGCCTCTCAAAA
Shewanella pealeana ATCC 700345 Spea_1318 -235 4 ATTCGGGATGGGTGTCACAAAG
Shewanella halifaxensis HAW-EB4 Shal_1381 -234 4.1 ATTTGGGATGAGTATCACGGAA
Shewanella piezotolerans WP3 swp_1469 -231 4.2 AGGTGAGACGGTGATCACAATA
Shewanella sediminis HAW-EB3 Ssed_3118 -203 4 TAGTGTGAAGTTCGTCGTAAAA
Shewanella woodyi ATCC 51908 Swoo_1565 -204 3.8 TTTTGTGAGATCGGTCGGAAAG
Position: -179
Score: 3.7
Sequence: TTTTGTTATCTACTGCAGTTAT
Position: -120
Score: 3.8
Sequence: TAAATTGATCTAGCGCATAGTT
Locus tag: KT99_03644
KT99_03644 -179 3.7 TTTTGTTATCTACTGCAGTTAT
-120 3.8 TAAATTGATCTAGCGCATAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcp
Ortholog function: Hydroxylamine reductase (EC 1.7.-.-)
Shewanella oneidensis MR-1 SO1363 -124 4.2 TAAAGTGATCTTTCTCTAAGAT
Shewanella putrefaciens CN-32 Sputcn32_1174 -124 4.3 TAAGGTGATAACCCTCGCAAAT
Shewanella sp W3-18-1 Sputw3181_2990 -124 4.3 TAAGGTGATAACCCTCGCAAAT
Shewanella sp MR-4 Shewmr4_2832 -124 4 TAAGGTGATCTCCCTCTAAGAT
Shewanella sp MR-7 Shewmr7_2914 -124 3.6 CAAGGTGATCTCTCTCTAAGAT
Shewanella baltica OS155 Sbal_1216 -124 4.1 TAAGGTGATCGTTCTCTAATAT
Shewanella frigidimarina NCIMB 400 Sfri_3609 -125 4 GAAGGTGATGTGGCTCATAAAA
Shewanella amazonensis SB2B Sama_0895 -113 3.6 TAAGATGATCTGCTTCAAGGAA
Shewanella loihica PV-4 Shew_1069 -125 4.5 TAATTTGATCCGCTTCATAGTT
Shewanella pealeana ATCC 700345 Spea_1055 -125 4.5 AAAAGTGATCTCTTTCATAGTT
Shewanella halifaxensis HAW-EB4 Shal_1103 -96 4.3 TAAGGTGATCTCTTTCATGTTT
Shewanella piezotolerans WP3 swp_3762 -42 4.4 TAAGGTGATCTCTTTCATAGTT
Shewanella sediminis HAW-EB3 Ssed_1165 -170 3.4 TAATGCAATTGGTATTATAATT
Shewanella woodyi ATCC 51908 Swoo_1260 -125 4.2 GAATTTGATCTGTCTCAAACTT
Position: -76
Score: 4.7
Sequence: AAACGTGATCTAGATCACGACT
Locus tag: KT99_03679
KT99_03679 -76 4.7 AAACGTGATCTAGATCACGACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfiA-2
Ortholog function: Ribosome hibernation protein YfiA
Shewanella oneidensis MR-1 SO3422 -78 4.7 AAGTGTGATTTAACTCTCGTTT
Shewanella putrefaciens CN-32 Sputcn32_2740 -77 5.1 TTTTGTGATTTAGATCTCGTTT
Shewanella sp W3-18-1 Sputw3181_1272 -77 5.1 TTTTGTGATTTAGATCTCGTTT
Shewanella sp ANA-3 Shewana3_1133 -78 5.1 AAATGTGATTTAGATCTCGTTT
Shewanella sp MR-4 Shewmr4_1132 -78 5.1 AAATGTGATTTAGATCTCGTTT
Shewanella sp MR-7 Shewmr7_1203 -78 5.1 AAATGTGATTTAGATCTCGTTT
Shewanella baltica OS155 Sbal_1221 -77 5.2 AAATGTGATCTAGATCTCGTTT
Shewanella denitrificans OS217 Sden_2746 -77 4.8 AAGTGTGACTTTGATCACGCTT
-38 4.1 TAATCTGAAGTTAAGCACATAA
Shewanella frigidimarina NCIMB 400 Sfri_2912 -77 5 AAGTGTGATGCAGATCACTATT
Shewanella amazonensis SB2B Sama_0899 -78 4.3 AAACGTGATTTTACTCACGACT
Shewanella loihica PV-4 Shew_1073 -76 4.6 AAAGTTGATCTAGATCACGTTT
Shewanella pealeana ATCC 700345 Spea_1060 -76 4.6 AAACGTGATTTAGATCACGACT
Shewanella halifaxensis HAW-EB4 Shal_4284 -83 4.6 AAACATGACCTAGATCACACTA
-58 3.8 TAATGTGATTGGACTATTGTAA
Shewanella halifaxensis HAW-EB4 Shal_1108 -76 4.6 AAACGTGATTTAGATCACGACT
Shewanella piezotolerans WP3 swp_3757 -76 4.6 AAACGTGATTTAGATCACGACT
Shewanella sediminis HAW-EB3 Ssed_1169 -222 3.8 TTTTGAGAGGCAAATAAAAAAA
-76 4.6 AAACGTGATTTAGATCACGACT
Shewanella woodyi ATCC 51908 Swoo_1264 -76 4.5 AAACGTGATCAAGATCACGACT
Position: -291
Score: 5
Sequence: AGTCGTGATCTAGATCACGTTT
Locus tag: KT99_03684
KT99_03684 -291 5 AGTCGTGATCTAGATCACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3421
Ortholog function: b-type cytochrome, putative
Shewanella oneidensis MR-1 SO3421 -244 4.2 AAACGAGAGTTAAATCACACTT
Shewanella putrefaciens CN-32 Sputcn32_2739 -242 4.8 AAACGAGATCTAAATCACAAAA
Shewanella sp W3-18-1 Sputw3181_1273 -242 4.8 AAACGAGATCTAAATCACAAAA
Shewanella sp ANA-3 Shewana3_1134 -241 4.9 AAACGAGATCTAAATCACATTT
Shewanella sp MR-4 Shewmr4_1133 -241 4.9 AAACGAGATCTAAATCACATTT
Shewanella sp MR-7 Shewmr7_1204 -241 4.9 AAACGAGATCTAAATCACATTT
Shewanella baltica OS155 Sbal_1222 -244 5 AAACGAGATCTAGATCACATTT
Shewanella denitrificans OS217 Sden_2745 -291 4.7 AAGCGTGATCAAAGTCACACTT
Shewanella frigidimarina NCIMB 400 Sfri_2911 -383 5.2 AATAGTGATCTGCATCACACTT
Shewanella amazonensis SB2B Sama_0900 -234 4.2 AGTCGTGAGTAAAATCACGTTT
Shewanella loihica PV-4 Shew_1074 -208 4.9 AAACGTGATCTAGATCAACTTT
Shewanella pealeana ATCC 700345 Spea_1061 -255 4.9 AGTCGTGATCTAAATCACGTTT
Shewanella halifaxensis HAW-EB4 Shal_1109 -255 4.9 AGTCGTGATCTAAATCACGTTT
Shewanella piezotolerans WP3 swp_3756 -366 4.9 AGTCGTGATCTAAATCACGTTT
Shewanella sediminis HAW-EB3 Ssed_1170 -236 4.9 AGTCGTGATCTAAATCACGTTT
Shewanella woodyi ATCC 51908 Swoo_1265 -234 4.9 AGTCGTGATCTTGATCACGTTT
Position: -225
Score: 4.6
Sequence: TCGCGTGATCTAGGTCACAATT
Locus tag: KT99_03769
KT99_03769 -225 4.6 TCGCGTGATCTAGGTCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: phk
Ortholog function: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Shewanella oneidensis MR-1 SO3542 -95 4.2 AATTTGGATGCAGAACACATTT
Shewanella putrefaciens CN-32 Sputcn32_1051 -234 4 TCATGTGATCAAGCCTACATTT
-95 4.1 AATTTGGATGTAGGGCACATTT
Shewanella sp W3-18-1 Sputw3181_3114 -234 4 TCATGTGATCAAGCCTACATTT
-95 4.1 AATTTGGATGTAGGGCACATTT
Shewanella sp ANA-3 Shewana3_3145 -95 4 AATTTGGATGCAGGGCACATTT
Shewanella sp MR-4 Shewmr4_2965 -95 4.3 AATTTGGATGTAGAACACATTT
Shewanella sp MR-7 Shewmr7_3047 -95 4.3 AATTTGGATGTAGAACACATTT
Shewanella baltica OS155 Sbal_1046 -235 4.4 TCATGTGATCAAGCTCGCGTTT
-96 4.1 AATTTGGATGTAGGGCACATTT
Shewanella denitrificans OS217 Sden_2731 -233 5 CTTAGTGATCCAGTTCACATTA
-94 3.7 AAGTTAGATCGGGGACACATTT
Shewanella frigidimarina NCIMB 400 Sfri_2898 -233 4.5 ACAAGTGATATCCATCACACTT
-95 3.8 AAATTAGATAAAGGCCACATTA
Shewanella amazonensis SB2B Sama_0915 -240 4.1 ACTCGTGATCAAGCTCACGGTT
-99 4.1 AATTTGGATGTGGGGCACATTT
Shewanella loihica PV-4 Shew_1091 -238 4.6 CCATGTGATACAGATCACAGTT
-97 4 AAATAAGATATTGAACACATTT
Shewanella pealeana ATCC 700345 Spea_1076 -235 3.9 CTGAGCGATATAGATCACAGTT
Shewanella halifaxensis HAW-EB4 Shal_1124 -56 4.3 TATAGTGAGTTATATAAAATTT
Shewanella piezotolerans WP3 swp_3738 -237 4.5 CTGAGTGATACAGATCACACAT
-96 3.8 AAATAAGATACAGGACACATTT
Shewanella sediminis HAW-EB3 Ssed_1186 -238 4.4 CCATGTGACGCAGATCACAGTT
-97 4.2 AAATAAGATGTAGAACACATTT
Shewanella woodyi ATCC 51908 Swoo_1282 -238 4.4 TCGCGTGATCACGATCACACTT
-97 3.8 AAACAAGATATAGAACACATTT
Position: -211
Score: 4.4
Sequence: AATTGTGACCTAGATCACGCGA
Locus tag: KT99_03774
KT99_03774 -211 4.4 AATTGTGACCTAGATCACGCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3541
Ortholog function: sodium:alanine symporter family protein
Shewanella baltica OS155 Sbal_1047 -220 3.9 AAACGCGAGCTTGATCACATGA
Shewanella denitrificans OS217 Sden_2730 -140 4.6 TAATGTGAACTGGATCACTAAG
Shewanella frigidimarina NCIMB 400 Sfri_2897 -306 4.2 AAGTGTGATGGATATCACTTGT
Shewanella loihica PV-4 Shew_1092 -210 4.4 AACTGTGATCTGTATCACATGG
Shewanella pealeana ATCC 700345 Spea_1077 -207 4.1 AACTGTGATCTATATCGCTCAG
Shewanella piezotolerans WP3 swp_3737 -210 4.5 ATGTGTGATCTGTATCACTCAG
Shewanella sediminis HAW-EB3 Ssed_1187 -214 4.2 AACTGTGATCTGCGTCACATGG
Shewanella woodyi ATCC 51908 Swoo_1283 -215 4.2 AAGTGTGATCGTGATCACGCGA
Position: -136
Score: 3.9
Sequence: CATTGTTATATTCTTAATATTA
Locus tag: KT99_03859
KT99_03859 -136 3.9 CATTGTTATATTCTTAATATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pilV
Ortholog function: type IV fimbrial biogenesis protein PilV
Shewanella oneidensis MR-1 SO3528 -49 4.5 TTTTTTGAGATGAATCACCTAA
Shewanella putrefaciens CN-32 Sputcn32_1063 -49 4.5 TTTTTTGAGATGAATCACCTAA
Shewanella sp W3-18-1 Sputw3181_3102 -49 4.5 TTTTTTGAGATGAATCACCTAA
Shewanella sp ANA-3 Shewana3_3132 -49 4.5 TTTTTTGAGATGAATCACCTAA
Shewanella sp MR-4 Shewmr4_2953 -49 4.5 TTTTTTGAGATGAATCACCTAA
Shewanella sp MR-7 Shewmr7_3035 -49 4.5 TTTTTTGAGATGAATCACCTAA
Shewanella baltica OS155 Sbal_1058 -49 4.6 TTTTTTGAGATGTATCACCTAA
Shewanella amazonensis SB2B Sama_0928 -138 3.9 TATTGTTACTGGCAGCAAACAA
Position: -130
Score: 4.3
Sequence: CAGCGTGATTGCGATCGCATTT
Locus tag: KT99_21229
KT99_21229 -130 4.3 CAGCGTGATTGCGATCGCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nqrA-2
Ortholog function: Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)
Shewanella oneidensis MR-1 SO1103 -129 4.3 CAGCGTGATTGCGATCGCATTT
Shewanella putrefaciens CN-32 Sputcn32_0940 -129 4.3 CAGCGTGATTGCGATCGCATTT
Shewanella sp W3-18-1 Sputw3181_3236 -129 4.3 CAGCGTGATTGCGATCGCATTT
Shewanella sp ANA-3 Shewana3_0938 -129 4.3 CAGCGTGATTGCGATCGCATTT
Shewanella sp MR-4 Shewmr4_0936 -129 4.3 CAGCGTGATTGCGATCGCATTT
Shewanella sp MR-7 Shewmr7_0974 -129 4.3 CAGCGTGATTGCGATCGCATTT
Shewanella baltica OS155 Sbal_0924 -128 4.3 CAGCGTGATTGCGATCGCATTT
Shewanella denitrificans OS217 Sden_0982 -128 4.3 CAGCGTGATTGCGATCGCATTA
Shewanella frigidimarina NCIMB 400 Sfri_0949 -127 4.3 CAGCGTGATTATGATCGCATTT
Shewanella amazonensis SB2B Sama_2539 -127 4.3 CAGCGTGATTGCGATCGCATTT
Shewanella loihica PV-4 Shew_2881 -131 4.3 CAGCGTGATTGCGATCGCATTT
-73 4.1 ATGTTTGAAATCTATCTCATTT
Shewanella pealeana ATCC 700345 Spea_3103 -133 4.4 CAGCGTGATTCTGATCGCATTT
Shewanella halifaxensis HAW-EB4 Shal_3187 -127 3.7 CAGCGTGATTACAGTCGCACTT
Shewanella piezotolerans WP3 swp_1167 -132 4.3 CAGCGTGATTGCGATCGCATTT
Shewanella sediminis HAW-EB3 Ssed_3431 -130 4.1 CAGCGTGATTGCGGTCGCATTT
Shewanella woodyi ATCC 51908 Swoo_3617 -46 4 CAGCGTGATTGCGGTCGCAAAT
Position: -325
Score: 3.5
Sequence: TATTGTGAGAATATGCATCGTT
Position: -220
Score: 3.4
Sequence: AAATGTGATGTGACCATTCAAA
Position: -99
Score: 4.1
Sequence: AAACTTGATGCATGTCAACTTT
Locus tag: KT99_11163
KT99_11163 -325 3.5 TATTGTGAGAATATGCATCGTT
-220 3.4 AAATGTGATGTGACCATTCAAA
-99 4.1 AAACTTGATGCATGTCAACTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hyaA
Ortholog function: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Shewanella oneidensis MR-1 SO2099 -105 4 ATTCTTGATATGCATCAATAAT
Shewanella putrefaciens CN-32 Sputcn32_2088 -167 3.7 AAATTAGATCTGCGTCATGTTA
-107 4 ATTCTTGATATACATCAATAAT
Shewanella sp W3-18-1 Sputw3181_1924 -167 3.7 AAATTAGATCTGCGTCATGTTA
-107 4 ATTCTTGATATACATCAATAAT
Shewanella sp ANA-3 Shewana3_1880 -166 3.9 AAATTAGATCTGCATCATGTTA
-106 4.2 ATTCTTGATATGCATCAAGAAT
Shewanella sp MR-4 Shewmr4_1822 -166 3.9 AAATTAGATCTGCATCATGTTA
-106 4.2 ATTCTTGATATGCATCAAGAAT
Shewanella sp MR-7 Shewmr7_2155 -166 3.9 AAATTAGATCTGCATCATGTTA
-106 4.2 ATTCTTGATATGCATCAAGAAT
Shewanella baltica OS155 Sbal_1889 -229 3.9 TTAAGTGACCGATTTCATCCAA
-167 3.7 AAATTAGATCTACGTCATGTTA
-107 4.2 ATTCTTGATATACATCAAGAAT
Shewanella frigidimarina NCIMB 400 Sfri_2103 -174 3.8 TTTTGTTAACTTGATCAACATC
-168 4.4 TAACTTGATCAACATCATAAAT
Shewanella amazonensis SB2B Sama_1679 -172 3.4 AAGCATGACACACCTCATGTTA
Shewanella loihica PV-4 Shew_1765 -164 3.8 AAACTTGATCCAGCTCATAGCT
-103 3.7 AATGTTGACATACATCAACATT
Shewanella pealeana ATCC 700345 Spea_2033 -211 4.6 TTACGTGACCACGATCACCTTT
Shewanella halifaxensis HAW-EB4 Shal_2261 -212 5 TTACGTGATCTCCATCACCTTT
Shewanella sediminis HAW-EB3 Ssed_1908 -162 4 AAAGATGATCTAGTTCATATTG
Position: -138
Score: 4.1
Sequence: TTTTTTGATCTAGCGCAATTTT
Position: -119
Score: 4.7
Sequence: TTTTGTGAGTCTCTTAACATTT
Locus tag: KT99_09029
KT99_09029 -138 4.1 TTTTTTGATCTAGCGCAATTTT
-119 4.7 TTTTGTGAGTCTCTTAACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cydD
Ortholog function: Transport ATP-binding protein CydD
Shewanella oneidensis MR-1 SO3780 -191 4.4 TTTATTGATCAGCATCGCATTT
Shewanella putrefaciens CN-32 Sputcn32_3106 -169 4.7 TTTTGTGAATCGGTTAACAAAA
Shewanella sp W3-18-1 Sputw3181_0838 -169 4.7 TTTTGTGAATCGGTTAACAAAA
Shewanella sp ANA-3 Shewana3_0812 -187 4.4 TTTATTGATCTTTATCTCATTT
-167 4.5 TTTTGTGAATAGGCTAACAAAA
Shewanella sp MR-4 Shewmr4_3127 -187 4.4 TTTATTGATCTTTATCTCATTT
-167 4.5 TTTTGTGAATAGGCTAACAAAA
Shewanella sp MR-7 Shewmr7_0840 -187 4.4 TTTATTGATCTTTATCTCATTT
-167 4.5 TTTTGTGAATAGGCTAACAAAA
Shewanella baltica OS155 Sbal_3463 -170 4.3 TTTTGTGAGTCTGCTAGCAAAA
Shewanella frigidimarina NCIMB 400 Sfri_3213 -214 4.2 TATTGTGTTGCAATTAACAATG
-104 5 AAATGTGAATCAGATAACATTT
Shewanella amazonensis SB2B Sama_2679 -137 4.2 TTTTTTGATCCAGCGCAAATTC
-118 4.2 TTCTGTGAATCCCCTAACAAAT
Shewanella loihica PV-4 Shew_0613 -129 4.5 TTTTTTGATCTAGCTCAATTTT
-110 4.8 TTTTGTGAGCCTAATAACAATT
Shewanella pealeana ATCC 700345 Spea_3494 -185 4.1 TTTATTGATCTAGCTCAATTTT
-166 4.4 TTTTGTGAGTCCGATAGCAAAT
Shewanella halifaxensis HAW-EB4 Shal_3589 -233 4.1 TTTATTGATCTAGCTCAATTTT
-214 4.9 TTTTGTGAGTCCGATAACATTT
Shewanella sediminis HAW-EB3 Ssed_3849 -139 4.1 AAAATTGATCTAGCTCAATTTT
-120 4.7 TTTTGTGAATCCGTTAACAATT
Shewanella woodyi ATCC 51908 Swoo_0710 -149 4.1 TTTATTGATCTAGCTCAATTTT
-130 4.7 TTTTGTGAATCTCTTAACATTT
Position: -159
Score: 4.2
Sequence: TATAGTGTTCCTCGTCACACTT
Locus tag: KT99_09039
KT99_09039 -159 4.2 TATAGTGTTCCTCGTCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3774
Ortholog function: proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Shewanella oneidensis MR-1 SO3774 -146 4.4 TATAGTGTTGTCCGTCACATTT
Shewanella putrefaciens CN-32 Sputcn32_3099 -128 3.8 GATAGTGTTGTCCGTCACATTT
Shewanella sp W3-18-1 Sputw3181_0845 -128 3.8 GATAGTGTTGTCCGTCACATTT
Shewanella sp ANA-3 Shewana3_0819 -131 4.4 TATAGTGTTGTCCGTCACATTT
Shewanella sp MR-4 Shewmr4_3122 -132 4.4 TATAGTGTTGTCCGTCACATTT
Shewanella sp MR-7 Shewmr7_0850 -131 4.4 TATAGTGTTGTCCGTCACATTT
Shewanella baltica OS155 Sbal_3458 -128 4.4 TATAGTGTTGTCCGTCACATTT
Shewanella frigidimarina NCIMB 400 Sfri_0568 -172 3.8 TTCAGTGAACAAAATCAAACAA
-131 4.1 TTGAGTGTCCAAGTTCACATTT
Shewanella loihica PV-4 Shew_0615 -146 3.9 AAGAGTGTCCCTCGTCACATTT
Shewanella pealeana ATCC 700345 Spea_3490 -127 3.9 ATTATTGCCACTCATCACATTT
Shewanella piezotolerans WP3 swp_0809 -137 3.9 AAAGGTGTCGCTCGTCACATTT
Shewanella sediminis HAW-EB3 Ssed_3846 -162 4 AATGGTGTCCCTCGTCACATTT
Shewanella woodyi ATCC 51908 Swoo_0714 -176 3.9 AAGAGTGTCCCTCGTCACATTT
Position: -92
Score: 4.6
Sequence: GATTGTGATCGGTATCAAACAA
Locus tag: KT99_07493
KT99_07493 -92 4.6 GATTGTGATCGGTATCAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lpdA
Ortholog function: Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
Shewanella oneidensis MR-1 SO0426 -113 4.7 TATTGTGATCAGTATCAAACAC
Shewanella putrefaciens CN-32 Sputcn32_3415 -111 4.7 TATTGTGATCAGTATCAAACAC
Shewanella sp W3-18-1 Sputw3181_0528 -111 4.7 TATTGTGATCAGTATCAAACAC
Shewanella sp ANA-3 Shewana3_0428 -113 4.7 TATTGTGATCAGTATCAAACAC
Shewanella sp MR-4 Shewmr4_0430 -113 4.7 TATTGTGATCAGTATCAAACAC
Shewanella sp MR-7 Shewmr7_3597 -113 4.7 TATTGTGATCAGTATCAAACAC
Shewanella baltica OS155 Sbal_3911 -111 4.7 TATTGTGATCAGTATCAAACAC
Shewanella frigidimarina NCIMB 400 Sfri_3775 -168 5.1 TATTGTGATCGGTTTCAAACAA
Shewanella pealeana ATCC 700345 Spea_0421 -128 4.5 GATTGTGATCAGCATCAAACAA
Shewanella halifaxensis HAW-EB4 Shal_0478 -130 4.6 GATTGTGATCCGTATCAAACAA
Shewanella piezotolerans WP3 swp_4749 -113 4.5 GATTGTGATCAGTATCAAACAA
Position: -294
Score: 4.3
Sequence: AAGTTTGAACCAGATCACACTC
Locus tag: KT99_07613
KT99_07613 -294 4.3 AAGTTTGAACCAGATCACACTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: yniC
Ortholog function: 2-deoxyglucose-6-phosphate hydrolase YniC
Shewanella oneidensis MR-1 SO0431 -302 3.9 AAGTATGAATCAGGTCACACTC
-118 3.8 TAACGAAATGCTTTTCACAGTA
Shewanella putrefaciens CN-32 Sputcn32_3410 -316 3.9 AAGTATGAATCAGGTCACACTC
Shewanella sp W3-18-1 Sputw3181_0533 -316 3.9 AAGTATGAATCAGGTCACACTC
Shewanella sp ANA-3 Shewana3_0432 -315 3.9 AAGTATGAATCAGGTCACACTC
Shewanella sp MR-4 Shewmr4_0436 -315 3.9 AAGTATGAATCAGGTCACACTC
Shewanella sp MR-7 Shewmr7_3593 -315 3.9 AAGTATGAATCAGGTCACACTC
Shewanella baltica OS155 Sbal_3906 -315 3.9 AAGTATGAATCAGGTCACACTC
Shewanella denitrificans OS217 Sden_3378 -316 4 AAGTATGAATCGGCTCACACTG
Shewanella frigidimarina NCIMB 400 Sfri_3772 -288 4.3 AAGTATGAATCAGCTCACACTA
Shewanella amazonensis SB2B Sama_0381 -255 4 AAGTATGAATCAGCTCACACTC
Shewanella loihica PV-4 Shew_3425 -295 4.1 AAGTATGAATCAGATCACACTC
Shewanella pealeana ATCC 700345 Spea_0424 -286 4.3 AAGTATGAATCCGATCACACTT
-178 4.1 AAACTTGATCTAAATTATATAA
Shewanella halifaxensis HAW-EB4 Shal_0481 -286 4.5 AAGTATGAATCCGATCACATTT
-178 3.7 AACCTTGATCTAAATTATATAA
Shewanella piezotolerans WP3 swp_4741 -283 4.4 AAGTATGAATCAGATCACACTT
-177 3.7 AACACTGAGATTAATCACATAA
-101 3.7 TTTCGTAAAGCTAAACACAATA
Shewanella sediminis HAW-EB3 Ssed_0437 -296 4.2 AAGTTTGAATCAGATCACACTC
Shewanella woodyi ATCC 51908 Swoo_0284 -296 4.2 AAGTTTGAATCAGATCACACTC
Position: -153
Score: 4.5
Sequence: GAGTGTGATCTGGTTCAAACTT
Locus tag: KT99_07618
KT99_07618 -153 4.5 GAGTGTGATCTGGTTCAAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acnB
Ortholog function: aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
Shewanella oneidensis MR-1 SO0432 -141 4.1 GAGTGTGACCTGATTCATACTT
Shewanella putrefaciens CN-32 Sputcn32_3409 -141 4.1 GAGTGTGACCTGATTCATACTT
Shewanella sp W3-18-1 Sputw3181_0534 -141 4.1 GAGTGTGACCTGATTCATACTT
Shewanella sp ANA-3 Shewana3_0433 -66 4.1 GAGTGTGACCTGATTCATACTT
Shewanella sp MR-4 Shewmr4_0437 -66 4.1 GAGTGTGACCTGATTCATACTT
Shewanella sp MR-7 Shewmr7_3592 -66 4.1 GAGTGTGACCTGATTCATACTT
Shewanella baltica OS155 Sbal_3905 -66 4.1 GAGTGTGACCTGATTCATACTT
Shewanella denitrificans OS217 Sden_3377 -139 4.1 CAGTGTGAGCCGATTCATACTT
-67 3.9 AATTGTTAGCCTTATCACTATG
Shewanella frigidimarina NCIMB 400 Sfri_3771 -139 4.6 TAGTGTGAGCTGATTCATACTT
Shewanella amazonensis SB2B Sama_0382 -138 4 GAGTGTGAGCTGATTCATACTT
Shewanella loihica PV-4 Shew_3424 -140 4.3 GAGTGTGATCTGATTCATACTT
Shewanella pealeana ATCC 700345 Spea_0425 -268 4 TTATATAATTTAGATCAAGTTT
-160 4.8 AAGTGTGATCGGATTCATACTT
Shewanella halifaxensis HAW-EB4 Shal_0482 -247 3.7 TTATATAATTTAGATCAAGGTT
-139 5 AAATGTGATCGGATTCATACTT
Shewanella piezotolerans WP3 swp_4740 -245 3.9 TTATGTGATTAATCTCAGTGTT
-139 4.9 AAGTGTGATCTGATTCATACTT
Shewanella sediminis HAW-EB3 Ssed_0438 -141 4.4 GAGTGTGATCTGATTCAAACTT
Shewanella woodyi ATCC 51908 Swoo_0285 -139 4.4 GAGTGTGATCTGATTCAAACTT
Position: 20
Score: 3.7
Sequence: ATTAGTGACCTTCATCGGCTAT
Locus tag: KT99_09803
KT99_09803 20 3.7 ATTAGTGACCTTCATCGGCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: putP
Ortholog function: proline/sodium symporter PutP (TC 2.A.21.2.1) @ propionate/sodium symporter
Shewanella putrefaciens CN-32 Sputcn32_2469 -60 4.2 AGGTTAGATTTTGATCACATTT
-30 3.8 TAATGGGTTCTTGCTCAAACAT
Shewanella sp W3-18-1 Sputw3181_1539 -60 4.4 ATGTTAGATTTTGATCACATTT
-30 3.8 TAATGGGTTCTTGCTCAAACAT
Shewanella sp ANA-3 Shewana3_1451 -73 3.8 TAATGGGTTCTTGCTCAAACAT
Shewanella sp MR-4 Shewmr4_1398 -73 3.8 TAATGGGTTCTTGCTCAAACAT
Shewanella sp MR-7 Shewmr7_1463 -73 3.8 TAATGGGTTCTTGCTCAAACAT
Shewanella baltica OS155 Sbal_2770 -102 3.8 AGGTTAGATTTTAATCACACTT
Shewanella frigidimarina NCIMB 400 Sfri_2686 -64 4.5 AAGTGTGAACTAGATCGAACTT
Shewanella amazonensis SB2B Sama_2177 -77 3.8 AATTGGGATCCGACCCAAACTT
Shewanella pealeana ATCC 700345 Spea_2608 -104 3.8 TGGTTAGATCTTCATCACATTC
Shewanella halifaxensis HAW-EB4 Shal_2680 -74 3.7 ATTTGAGCCTTGGCTCATAAAT
Shewanella piezotolerans WP3 swp_3151 -72 3.7 ATTATTGAGCTATAGCTCAAAT
-70 4.3 TATTGAGCTATAGCTCAAATAT
Shewanella sediminis HAW-EB3 Ssed_1619 -72 3.9 TATTGAGCTTCCTATCAAACAT
Shewanella woodyi ATCC 51908 Swoo_3036 -86 4.4 GTATATGACCCAGTTCACATTT
Position: -306
Score: 4.5
Sequence: AAGTGTGATCCGATTCTAACTT
Locus tag: KT99_09843
KT99_09843 -306 4.5 AAGTGTGATCCGATTCTAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3090
Ortholog function: MoxR-like ATPase in aerotolerance operon
Shewanella oneidensis MR-1 SO3090 -165 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella putrefaciens CN-32 Sputcn32_2461 -97 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella sp W3-18-1 Sputw3181_1547 -97 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella sp ANA-3 Shewana3_1459 -160 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella sp MR-4 Shewmr4_1406 -160 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella sp MR-7 Shewmr7_1471 -160 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella baltica OS155 Sbal_2762 -148 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella denitrificans OS217 Sden_1528 -157 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella frigidimarina NCIMB 400 Sfri_2678 -167 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella amazonensis SB2B Sama_2169 -137 4.2 AAGTGTGACCCGATTCTAACTT
Shewanella loihica PV-4 Shew_2427 -296 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella pealeana ATCC 700345 Spea_2600 -306 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella halifaxensis HAW-EB4 Shal_2672 -319 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella piezotolerans WP3 swp_3141 -97 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella sediminis HAW-EB3 Ssed_1627 -316 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella woodyi ATCC 51908 Swoo_3028 -306 4.8 AAATGTGATCTGATTCTAACTT
Position: -188
Score: 3.5
Sequence: TTTATTGATATTTTTCAGCCTA
Position: -132
Score: 3.8
Sequence: AAGTTAGAATCGGATCACACTT
Locus tag: KT99_09848
KT99_09848 -188 3.5 TTTATTGATATTTTTCAGCCTA
-132 3.8 AAGTTAGAATCGGATCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadI
Ortholog function: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Shewanella oneidensis MR-1 SO3089 -131 3.9 AAGTTAGAATCAGATCACACTT
Shewanella putrefaciens CN-32 Sputcn32_2460 -136 3.9 AAGTTAGAATCAGATCACACTT
Shewanella sp W3-18-1 Sputw3181_1548 -136 3.9 AAGTTAGAATCAGATCACACTT
Shewanella sp ANA-3 Shewana3_1460 -135 3.9 AAGTTAGAATCAGATCACACTT
Shewanella sp MR-4 Shewmr4_1407 -135 3.9 AAGTTAGAATCAGATCACACTT
Shewanella sp MR-7 Shewmr7_1472 -135 3.9 AAGTTAGAATCAGATCACACTT
Shewanella baltica OS155 Sbal_2761 -136 3.9 AAGTTAGAATCAGATCACACTT
Shewanella denitrificans OS217 Sden_1529 -109 3.9 AAGTTAGAATCAGATCACACTT
Shewanella frigidimarina NCIMB 400 Sfri_2677 -104 3.9 AAGTTAGAATCAGATCACACTT
Shewanella amazonensis SB2B Sama_2168 -112 3.6 AAGTTAGAATCGGGTCACACTT
Shewanella loihica PV-4 Shew_2426 -134 3.9 AAGTTAGAATCAGATCACACTT
Shewanella pealeana ATCC 700345 Spea_2599 -116 3.9 AAGTTAGAATCAGATCACACTT
Shewanella halifaxensis HAW-EB4 Shal_2671 -119 3.9 AAGTTAGAATCAGATCACACTT
Shewanella piezotolerans WP3 swp_3140 -122 3.9 AAGTTAGAATCAGATCACACTT
Shewanella sediminis HAW-EB3 Ssed_1628 -151 3.9 AAGTTAGAATCAGATCACACTT
Shewanella woodyi ATCC 51908 Swoo_3027 -138 4.1 AAGTTAGAATCAGATCACATTT
Position: -314
Score: 4.6
Sequence: TTTTATGATGTTGGTCATATAA
Position: -293
Score: 4.4
Sequence: AAATATGATCTATTTCAAAACA
Locus tag: KT99_13802
KT99_13802 -314 4.6 TTTTATGATGTTGGTCATATAA
-293 4.4 AAATATGATCTATTTCAAAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: icd
Ortholog function: isocitrate dehydrogenase [NADP] (EC 1.1.1.42); monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
Shewanella oneidensis MR-1 SO2629 -199 4.1 AAATGTGATCTACACCTAAATG
Shewanella putrefaciens CN-32 Sputcn32_2230 -212 3.9 AAATGTGATCTGTGCCTAAATG
Shewanella sp W3-18-1 Sputw3181_1779 -212 3.9 AAATGTGATCTGTGCCTAAATG
Shewanella sp ANA-3 Shewana3_1750 -209 3.9 AAATGTGATCTACGCCTAAATG
Shewanella sp MR-4 Shewmr4_1606 -208 3.9 AAATGTGATCTACGCCTAAATG
Shewanella sp MR-7 Shewmr7_1681 -208 3.9 AAATGTGATCTACGCCTAAATG
Shewanella baltica OS155 Sbal_2475 -212 3.9 AAATGTGATCTGTGCCTAAATG
Shewanella frigidimarina NCIMB 400 Sfri_2257 -242 4.6 AATTGTGATCTGTACCTAATTT
Shewanella loihica PV-4 Shew_1563 -237 3.8 ATTTATGATGTCGGCCAACTAA
-217 4.1 AAATGTGATCGATAGCAAAACG
Shewanella pealeana ATCC 700345 Spea_2535 -195 4.2 AAGTGTGATCTGCAGCTAACTA
Shewanella piezotolerans WP3 swp_1868 -21 4.2 AAGTGTGATCCGCAACTAAATT
Shewanella sediminis HAW-EB3 Ssed_1883 -275 3.9 AAGTGTGATCTGCGCCAAGTTG
Shewanella woodyi ATCC 51908 Swoo_2702 -304 3.9 AAGTGTGATCTAAGCCAAGTTG
Position: -131
Score: 4
Sequence: AATTGTGATCTGTGTGGCAATC
Locus tag: KT99_13832
KT99_13832 -131 4 AATTGTGATCTGTGTGGCAATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2637
Ortholog function: hypothetical protein
Shewanella amazonensis SB2B Sama_2066 -139 4 ATTTGTGATCACTGTGGCAATT
Shewanella loihica PV-4 Shew_1556 -132 4.2 AATTGTGATCGGCGTGGCAATT
Shewanella pealeana ATCC 700345 Spea_2542 -138 4.3 ATTTGTGATTTGTCTGGCAATT
Shewanella halifaxensis HAW-EB4 Shal_1712 -140 4.1 ATTTGTGAACTATCTGGCAATT
Shewanella piezotolerans WP3 swp_1858 -143 4.3 ATTTGTGATCCATGTGGCAATT
Shewanella sediminis HAW-EB3 Ssed_1878 -136 4.4 AATTGTGATCTGCGTGGCAATT
Shewanella woodyi ATCC 51908 Swoo_2709 -136 4.4 AATTGTGATCTGTGTGGCAATT
Position: -258
Score: 4
Sequence: AAGTGTGATCTAGATCCTTAAA
Locus tag: KT99_13972
KT99_13972 -258 4 AAGTGTGATCTAGATCCTTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2753
Ortholog function: prolyl endopeptidase (EC 3.4.21.26)
Shewanella oneidensis MR-1 SO2753 -235 4.7 TTAAGTGATCTGCCTCACTTAA
Shewanella putrefaciens CN-32 Sputcn32_1602 -234 4.8 TTAAGTGATCTAGCTCACTTAA
Shewanella sp W3-18-1 Sputw3181_2420 -234 4.8 TTAAGTGATCTAGCTCACTTAA
Shewanella sp ANA-3 Shewana3_2536 -234 4.8 TTAAGTGATCTGGCTCACTTAA
Shewanella sp MR-4 Shewmr4_2373 -234 4.8 TTAAGTGATCTGGCTCACTTAA
Shewanella sp MR-7 Shewmr7_2445 -234 4.8 TTAAGTGATCTGGCTCACTTAA
Shewanella baltica OS155 Sbal_1741 -233 4.7 AAAGGTGATCTATATCACTTAA
Shewanella amazonensis SB2B Sama_2091 -226 4.7 TTGTGTGATCTTGCGCACGTTA
Shewanella loihica PV-4 Shew_1522 -276 3.5 ATTTGCGCTTGATTACGCAAAA
Shewanella pealeana ATCC 700345 Spea_2569 -251 3.9 TAGTGTGGGTTTAGTCACACTT
Shewanella halifaxensis HAW-EB4 Shal_1686 -266 3.6 TATTGCGGGGTTTGTCACGTTT
Shewanella piezotolerans WP3 swp_1825 -248 3.6 TTGTGAGTCCTTAATCACGTTT
Shewanella sediminis HAW-EB3 Ssed_1852 -257 3.8 AAGTGTGATCTTGGTCGGTAAA
Shewanella woodyi ATCC 51908 Swoo_2736 -259 3.7 TAGTGTGATCTAGGTTGGGTAA
Position: -106
Score: 4.4
Sequence: AAAGGTGATATTCGTCGCAAAA
Locus tag: KT99_13992
KT99_13992 -106 4.4 AAAGGTGATATTCGTCGCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Swoo_2741
Ortholog function: Alkyl hydroperoxide reductase subunit C-like protein
Shewanella putrefaciens CN-32 Sputcn32_1599 -183 4.6 AAATGTGATATTGGTCTTAAAT
Shewanella sp W3-18-1 Sputw3181_2423 -183 4.6 AAATGTGATATTGGTCTTAAAT
Shewanella sp ANA-3 Shewana3_2541 -167 4.6 AAATGTGATATTGGTCTTAAAT
Shewanella sp MR-4 Shewmr4_2376 -167 4.6 AAATGTGATATTGGTCTTAAAT
Shewanella sp MR-7 Shewmr7_2448 -167 4.6 AAATGTGATATTGGTCTTAAAT
Shewanella baltica OS155 Sbal_1738 -183 4.6 AAATGTGATATTGGTCTTAAAT
Shewanella denitrificans OS217 Sden_2091 -88 4.7 GATTGTGATCCCTCTCGCATAT
Shewanella amazonensis SB2B Sama_2094 -115 4.3 TTGTGTGATATTCCTCCAAATT
Shewanella loihica PV-4 Shew_1516 -105 4.1 AAAAGTGACAATGATCCCAAAT
Shewanella halifaxensis HAW-EB4 Shal_1683 -108 4.4 AAAAGTGATATTGATATCAAAT
Shewanella piezotolerans WP3 swp_1821 -108 4.7 AAAAGTGATATTGCTCTCAAAT
Shewanella sediminis HAW-EB3 Ssed_1848 -106 4.4 AAAGGTGATATTGATCCCAAAT
Position: -228
Score: 4.4
Sequence: TTTTGCGACGAATATCACCTTT
Locus tag: KT99_13997
KT99_13997 -228 4.4 TTTTGCGACGAATATCACCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2757
Ortholog function: Histidine permease YuiF
Shewanella oneidensis MR-1 SO2757 -225 4.2 ATTTAAGACCAATATCACATTT
Shewanella putrefaciens CN-32 Sputcn32_1598 -225 4.2 ATTTAAGACCAATATCACATTT
Shewanella sp W3-18-1 Sputw3181_2424 -225 4.2 ATTTAAGACCAATATCACATTT
Shewanella sp ANA-3 Shewana3_2542 -225 4.2 ATTTAAGACCAATATCACATTT
Shewanella sp MR-4 Shewmr4_2377 -225 4.2 ATTTAAGACCAATATCACATTT
Shewanella sp MR-7 Shewmr7_2449 -225 4.2 ATTTAAGACCAATATCACATTT
Shewanella baltica OS155 Sbal_1737 -227 4.2 ATTTAAGACCAATATCACATTT
Shewanella denitrificans OS217 Sden_2092 -208 4.3 ATATGCGAGAGGGATCACAATC
Shewanella frigidimarina NCIMB 400 Sfri_1454 -191 3.5 TTAAATAATAAGTTTCAAATAT
Shewanella amazonensis SB2B Sama_2095 -210 3.9 AATTTGGAGGAATATCACACAA
Shewanella loihica PV-4 Shew_1515 -230 4 ATTTGGGATCATTGTCACTTTT
Shewanella halifaxensis HAW-EB4 Shal_1682 -225 3.9 ATTTGATATCAATATCACTTTT
Shewanella piezotolerans WP3 swp_1820 -77 4.1 ATTTGAGAGCAATATCACTTTT
Shewanella sediminis HAW-EB3 Ssed_1847 -226 4.5 ATTTGGGATCAATATCACCTTT
Shewanella woodyi ATCC 51908 Swoo_2742 -155 4 TTTAGTGCTGTTATTTACACTT
Position: -137
Score: 4.1
Sequence: CTTTGTGATCACTGTCTAATAA
Position: -76
Score: 4.3
Sequence: TATTGTGCGCGTGATTACATTT
Locus tag: KT99_16651
KT99_16651 -137 4.1 CTTTGTGATCACTGTCTAATAA
-76 4.3 TATTGTGCGCGTGATTACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: swp_4930
Ortholog function: transcriptional regulator, LysR family
Shewanella frigidimarina NCIMB 400 Sfri_2509 -114 3.9 TATTGTGACATATAGATAATAT
Shewanella pealeana ATCC 700345 Spea_4030 -80 3.8 TATTGTGGCCATAGTTACATTT
Shewanella halifaxensis HAW-EB4 Shal_0228 -81 4.3 TATTGTGCTCACAGTTACATTT
Shewanella piezotolerans WP3 swp_4930 -80 4.3 TAATGTGCCCCAAGTTACATTT
Shewanella sediminis HAW-EB3 Ssed_3221 -77 4.4 TATTGTGCGCCTGATTACATAT
Position: -306
Score: 4.8
Sequence: AAGTGTGACCCGTCTAACATTA
Locus tag: KT99_16696
KT99_16696 -306 4.8 AAGTGTGACCCGTCTAACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fixA
Ortholog function: electron transfer flavoprotein, beta subunit FixA
Shewanella loihica PV-4 Shew_2677 -234 4.2 AAATGTGAAGCGTGTAACATCA
Shewanella pealeana ATCC 700345 Spea_4039 -267 5.2 TTGTGTGATCTGTATAACATTA
Shewanella halifaxensis HAW-EB4 Shal_0219 -274 4.8 AAGTGTGACACACATAACATTA
Shewanella piezotolerans WP3 swp_4939 -269 4.7 AAGTGTGACGAACATAACATTA
Shewanella sediminis HAW-EB3 Ssed_3230 -306 4.8 AAGTGTGACCCGCCTAACATTA
Position: -164
Score: 4.6
Sequence: AAACGTGTTGTTGTTCACACTT
Locus tag: KT99_00992
KT99_00992 -164 4.6 AAACGTGTTGTTGTTCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: narQ
Ortholog function: Nitrate/nitrite sensor protein (EC 2.7.3.-)
Shewanella oneidensis MR-1 SO3981 -174 3.7 AAGTTTGCGCTAGATCAAAATG
-151 4.5 AATAGTGTTGTTGTTCACACTT
Shewanella putrefaciens CN-32 Sputcn32_0684 -114 4.5 AATAGTGTTGTTGTTCACACTT
Shewanella sp W3-18-1 Sputw3181_3487 -114 4.5 AATAGTGTTGTTGTTCACACTT
Shewanella sp ANA-3 Shewana3_0657 -138 3.7 AAGTTTGCGCTAGATCAAAATG
-115 4.5 AATAGTGTTGTTGTTCACACTT
Shewanella sp MR-4 Shewmr4_0658 -139 3.7 AAGTTTGCGCTAGATCAAAATG
-116 4.5 AATAGTGTTGTTGTTCACACTT
Shewanella sp MR-7 Shewmr7_3364 -139 3.7 AAGTTTGCGCTAGATCAAAATG
-116 4.5 AATAGTGTTGTTGTTCACACTT
Shewanella baltica OS155 Sbal_0793 -121 3.7 AAGTTTGCGCTAGATCAAAATG
-98 4.5 AAAGGTGTTGTTGTTCACATTT
Shewanella frigidimarina NCIMB 400 Sfri_0621 -140 3.9 AAACAGGATGTATCTCACAGTT
Shewanella amazonensis SB2B Sama_0647 -112 4 GGATGTGTTATTGTTCACACTT
Shewanella loihica PV-4 Shew_0843 -136 3.9 AAACTTGAGGCAGATCATAATG
-113 4.4 GAATGTGTTGTTGGTCACATTT
Shewanella pealeana ATCC 700345 Spea_0830 -109 4 GAACGTGTTGTTGCTCACACTT
-81 3.8 ATTTGTTAATGTAATCAAGTAT
Shewanella halifaxensis HAW-EB4 Shal_0885 -111 4.3 GAATGTGTTGTTGCTCACACTT
Shewanella sediminis HAW-EB3 Ssed_0930 -113 4.8 AAATGTGGTGTTGCTCACACTT
Shewanella woodyi ATCC 51908 Swoo_0971 -112 4.8 AAACGTGTTGTTGCTCACATTT
Position: -197
Score: 4.2
Sequence: AAGTGTGAACAACAACACGTTT
Locus tag: KT99_00997
KT99_00997 -197 4.2 AAGTGTGAACAACAACACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrfA
Ortholog function: cytochrome c552 precursor (EC 1.7.2.2)
Shewanella oneidensis MR-1 SO3980 -149 3.9 AAGTGTGAACAACAACACTATT
-126 4.1 CATTTTGATCTAGCGCAAACTT
Shewanella putrefaciens CN-32 Sputcn32_0685 -149 3.9 AAGTGTGAACAACAACACTATT
-126 4.1 CATTTTGATCTGGCGCAAACTT
Shewanella sp W3-18-1 Sputw3181_3486 -149 3.9 AAGTGTGAACAACAACACTATT
-126 4.1 CATTTTGATCTGGCGCAAACTT
Shewanella sp ANA-3 Shewana3_0658 -131 3.9 AAGTGTGAACAACAACACTATT
-108 4.1 CATTTTGATCTAGCGCAAACTT
Shewanella sp MR-4 Shewmr4_0659 -131 3.9 AAGTGTGAACAACAACACTATT
-108 4.1 CATTTTGATCTAGCGCAAACTT
Shewanella sp MR-7 Shewmr7_3363 -131 3.9 AAGTGTGAACAACAACACTATT
-108 4.1 CATTTTGATCTAGCGCAAACTT
Shewanella baltica OS155 Sbal_0794 -149 4.4 AAATGTGAACAACAACACCTTT
-126 4.1 CATTTTGATCTAGCGCAAACTT
Shewanella loihica PV-4 Shew_0844 -156 4.5 AAATGTGACCAACAACACATTC
-133 4.2 CATTATGATCTGCCTCAAGTTT
Shewanella pealeana ATCC 700345 Spea_0831 -183 4 ATACTTGATTACATTAACAAAT
-155 3.8 AAGTGTGAGCAACAACACGTTC
-71 4.1 ATAAGTGATTAAATTCAACCTT
Shewanella halifaxensis HAW-EB4 Shal_0886 -152 4.2 AAGTGTGAGCAACAACACATTC
Shewanella piezotolerans WP3 swp_3958 -150 4 AAATGTGAGCAACAACACGTTC
Shewanella sediminis HAW-EB3 Ssed_0931 -154 4.6 AAGTGTGAGCAACACCACATTT
-131 3.9 CATTTTGATCTACCGCATACTT
Shewanella woodyi ATCC 51908 Swoo_0972 -154 4.4 AAATGTGAGCAACAACACGTTT
Position: -124
Score: 4
Sequence: ATTCTTAACCTATGTCACAAAA
Locus tag: KT99_13587
KT99_13587 -124 4 ATTCTTAACCTATGTCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3556
Ortholog function: cyclic nucleotide phosphodiesterase, putative
Shewanella oneidensis MR-1 SO3556 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella oneidensis MR-1 SO3556 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella sp MR-4 Shewmr4_2977 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella sp MR-4 Shewmr4_2977 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella sp MR-7 Shewmr7_3059 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella sp MR-7 Shewmr7_3059 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella amazonensis SB2B Sama_1062 -82 4.1 AAATTTGCCAAAGCTCACACAT
Shewanella amazonensis SB2B Sama_1062 -82 4.1 AAATTTGCCAAAGCTCACACAT
Position: -2
Score: 3.8
Sequence: TTATGTTATTAATGCCAAAAAT
Locus tag: KT99_13657
KT99_13657 -2 3.8 TTATGTTATTAATGCCAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ycbW
Ortholog function: probable membrane protein YcbW
Shewanella oneidensis MR-1 SO2591 -63 3.8 TATTTTGATATTGAATAAAATA
-34 3.8 TGATGTGCCAGTGTTCAAATAG
-2 3.7 TTATGTTATTATTGCCGCAAAA
Shewanella putrefaciens CN-32 Sputcn32_2193 -63 3.8 TATTTTGATATTGAATAAAATA
-34 4 TTATGTGCGAGTGTTCAAATAG
-2 3.8 TTATGTTATTAATGCCGCAAAA
Shewanella sp W3-18-1 Sputw3181_1816 -63 3.8 TATTTTGATATTGAATAAAATA
-34 3.7 TGATGTGCGAGTGTTCAAATAG
-2 3.8 TTATGTTATTAATGCCGCAAAA
Shewanella sp ANA-3 Shewana3_1787 -63 3.8 TATTTTGATATTGAATAAAATA
-34 3.7 TGATGTGCGAGTGTTCAAATAG
-2 4 TTATGTTATTATTGCCACAAAA
Shewanella sp MR-4 Shewmr4_1682 -63 3.8 TATTTTGATATTGAATAAAATA
-34 3.8 TGATGTGCCAGTGTTCAAATAG
-2 4 TTATGTTATTATTGCCACAAAA
Shewanella sp MR-7 Shewmr7_1757 -63 3.8 TATTTTGATATTGAATAAAATA
-34 3.7 TGATGTGCGAGTGTTCAAATAG
-2 4 TTATGTTATTATTGCCACAAAA
Shewanella baltica OS155 Sbal_2438 -2 4.2 TTATGTTATTAATGCCACAAAA
Shewanella denitrificans OS217 Sden_1731 -139 4.2 ATTTATGAGTGCGATCAAAATT
Shewanella amazonensis SB2B Sama_1594 -2 3.9 TTATGTTATTAATGCCACATAC
Shewanella loihica PV-4 Shew_1811 -94 4.6 TGTTGTAATCTATATCATATTT
Shewanella pealeana ATCC 700345 Spea_1944 -62 4.1 TATTTTGATATTGATGAAATTA
Shewanella halifaxensis HAW-EB4 Shal_2355 -62 4.1 TATTTTGATATTGATGAAATAA
Shewanella piezotolerans WP3 swp_2809 -239 3.8 TTTAATAATATAGATCATAAAA
-143 4.1 TATTTTGATATTGATGAAATTA
-2 4 ATATGGAATTTCTATCACCTTT
Shewanella sediminis HAW-EB3 Ssed_2474 -94 4.6 TATTGTTATTCAACTCATATTT
Shewanella woodyi ATCC 51908 Swoo_2142 -52 4 TACTTTGATATTGAACAAAATA
Position: -109
Score: 4.5
Sequence: TTGAGTGATATGGCACACATAA
Locus tag: KT99_07244
KT99_07244 -109 4.5 TTGAGTGATATGGCACACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppc
Ortholog function: phosphoenolpyruvate carboxylase (EC 4.1.1.31)
Shewanella sp ANA-3 Shewana3_3906 -233 3.7 AATATTGCGTTAGCTCGCATTT
-189 3.7 TATCGCGATTAGTTGCATATAA
Shewanella sp MR-4 Shewmr4_3710 -228 3.7 AATATTGCGTTAGCTCGCATTT
-184 4.3 TATCGTGATTAGTTGCATATAA
Shewanella sp MR-7 Shewmr7_0235 -228 3.7 AATATTGCGTTAGCTCGCATTT
-184 4.3 TATCGTGATTAGTTGCATATAA
Shewanella loihica PV-4 Shew_0200 -107 4.3 CAAGGTGATATAGAACACATAA
Shewanella halifaxensis HAW-EB4 Shal_4095 -106 5 AAAAGTGATATAGAGCACATTA
Shewanella piezotolerans WP3 swp_2053 -106 4.4 TAAAGTGAGGTAGAGCACATTC
Shewanella sediminis HAW-EB3 Ssed_4278 -111 3.9 CCGAGTGATGTAGAGCACATAA
Shewanella woodyi ATCC 51908 Swoo_0327 -111 4.7 AGAAGTGATGTAGAACACATAA
Position: 20
Score: 3.9
Sequence: TTATTTGATTGTGGGCACAACA
Locus tag: KT99_14560
KT99_14560 20 3.9 TTATTTGATTGTGGGCACAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2857
Ortholog function: sodium solute symporter family protein
Shewanella oneidensis MR-1 SO2857 -105 4.8 TATTGTGAGTAAGTTCGCAAAT
Shewanella putrefaciens CN-32 Sputcn32_2358 -75 4.2 AGTCGTGATTGTGCTCACACCA
Shewanella sp W3-18-1 Sputw3181_1651 -75 4.2 AGTCGTGATTGTGCTCACACCA
Shewanella sp ANA-3 Shewana3_1575 -105 4 GGATGTGAGCCGCTTCGCAAAT
Shewanella sp MR-4 Shewmr4_1514 -105 3.9 CCGTGTGAGGTATTTCGCAAAT
Shewanella sp MR-7 Shewmr7_1581 -105 3.9 CCGTGTGAGGTATTTCGCAAAT
Shewanella baltica OS155 Sbal_2638 -75 4.2 AGTCGTGATTGTGCTCACACCA
Shewanella frigidimarina NCIMB 400 Sfri_1547 -237 4.9 TTTTGTGATGCAGATCTCAATC
Position: -177
Score: 3.8
Sequence: AGTAGTGATTTAAGTCGCGTTG
Locus tag: KT99_01389
KT99_01389 -177 3.8 AGTAGTGATTTAAGTCGCGTTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1326
Ortholog function: COG1242: Predicted Fe-S oxidoreductase
Shewanella oneidensis MR-1 SO1326 -294 4.3 AATAGTGATTTTTATTGCAAAT
Shewanella putrefaciens CN-32 Sputcn32_1137 -293 4.3 AATAGTGATTTTTATTGCAAAT
-224 4.6 ATTTGTGAGGTAGATCGCTAAA
Shewanella sp W3-18-1 Sputw3181_3027 -293 4.3 AATAGTGATTTTTATTGCAAAT
-224 4.3 GTTTGTGATGTAGATCGCTAAA
Shewanella sp ANA-3 Shewana3_3048 -294 4.3 AATAGTGATTTTTATTGCAAAT
Shewanella sp MR-4 Shewmr4_2870 -55 4.3 AATAGTGATTTTTATTGCAAAT
Shewanella sp MR-7 Shewmr7_2952 -55 4.3 AATAGTGATTTTTATTGCAAAT
Shewanella baltica OS155 Sbal_1179 -293 3.9 AATAGTGATTTTTATTGCAAAC
-225 4.2 TGATGTGAGCAATATCTCAATG
-193 4.3 TAATTTGAGGATGCGCACATTT
Shewanella frigidimarina NCIMB 400 Sfri_2950 -128 3.9 TTTTTTGAGTTTGTGCACAACT
Shewanella loihica PV-4 Shew_1033 -148 4.4 AAAAGTGATTTTTATTGCATAT
-127 4 TACAGTGAATTATTTAACAAAT
Shewanella pealeana ATCC 700345 Spea_1014 -303 3.9 TAAATTGACCTGTATAACCTTA
-201 4 TAAAGTGATTTTTTTTGCAGAT
Shewanella halifaxensis HAW-EB4 Shal_1062 -210 4 TAAAGTGATTTTTCTTGCAGAT
Shewanella piezotolerans WP3 swp_3802 -111 3.8 TTATTTGAGCTAGCGCTAATAA
Shewanella woodyi ATCC 51908 Swoo_1222 -229 3.8 AAATATGAGTTCTATTGCAAAT
Position: -110
Score: 4
Sequence: TAAGTCGATTCTGTTCACATAT
Locus tag: KT99_01399
KT99_01399 -110 4 TAAGTCGATTCTGTTCACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1328
Ortholog function: transcriptional regulator, LysR family
Shewanella oneidensis MR-1 SO1328 -109 4 AAAATCGATTTTGCTCACACAA
Shewanella putrefaciens CN-32 Sputcn32_1139 -109 3.8 AATGGCGATTCTGCTCACACTC
Shewanella sp W3-18-1 Sputw3181_3025 -109 3.9 AATGGCGATTCGGCTCACACTC
Shewanella sp ANA-3 Shewana3_3046 -109 3.9 AAAATCGATTTTGCTCACAGTA
Shewanella sp MR-4 Shewmr4_2868 -109 4 AAAATCGATTTTGCTCACACTA
Shewanella sp MR-7 Shewmr7_2950 -109 4 AAAATCGATTTTGCTCACACAA
Shewanella loihica PV-4 Shew_1035 -110 3.8 TTTTGGGCAGCGCTTCACACTT
Shewanella pealeana ATCC 700345 Spea_1016 -89 4.8 ATTTTTGATTCAGTTCACAAAC
Shewanella halifaxensis HAW-EB4 Shal_1064 -89 4.6 ATTTTTGATTCAGTTCACAGTC
Shewanella woodyi ATCC 51908 Swoo_1224 -111 4.3 ATTTTAGAGATAGCTCACATTT
Position: -163
Score: 4.5
Sequence: TCATTTGACCGAGATCACAAAT
Locus tag: KT99_01404
KT99_01404 -163 4.5 TCATTTGACCGAGATCACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyaC
Ortholog function: Adenylate cyclase (EC 4.6.1.1)
Shewanella oneidensis MR-1 SO1329 -162 4.7 TGTATTGATCCAGATCACAAAT
Shewanella putrefaciens CN-32 Sputcn32_1140 -101 4.7 TGTATTGATCCAGATCACAAAT
Shewanella sp W3-18-1 Sputw3181_3024 -101 4.7 TGTATTGATCCAGATCACAAAT
Shewanella sp ANA-3 Shewana3_3045 -162 4.4 TGGATTGATCCAGATCACAAAT
Shewanella sp MR-4 Shewmr4_2867 -162 4.4 TGGATTGATCCAGATCACAAAT
Shewanella sp MR-7 Shewmr7_2949 -162 4.4 TGGATTGATCCAGATCACAAAT
Shewanella baltica OS155 Sbal_1182 -101 4.7 TAGATTGATCCAGATCACAAAT
Shewanella denitrificans OS217 Sden_2784 -157 4.8 TGAATTGATCTAGATCACATTT
Shewanella frigidimarina NCIMB 400 Sfri_2947 -158 4.4 TCTATTGATCTAAATCACAAAT
Shewanella amazonensis SB2B Sama_0861 -102 4.2 TGAATTGATTCAGATCACGTTA
Shewanella loihica PV-4 Shew_1036 -162 4.6 TCATTTGACTTAGATCACAAAT
Shewanella pealeana ATCC 700345 Spea_1019 -100 4.6 TCATTTGACTTAGATCACAAAT
Shewanella halifaxensis HAW-EB4 Shal_1065 -99 5.1 TTATTTGACTTAGATCACAAAT
Shewanella piezotolerans WP3 swp_3798 -98 4.6 TCATTTGACTTAGATCACAAAT
Shewanella sediminis HAW-EB3 Ssed_1130 -103 4.3 TCATTTGACAAAGATCACAAAT
Shewanella woodyi ATCC 51908 Swoo_1225 -96 4.3 TCATTTGACTAAGATCACAAAT
Position: -313
Score: 3.6
Sequence: AAATGTTAAACACTTAGCATAC
Position: -247
Score: 3.6
Sequence: TTTATTGATCTAAATTAAGATT
Position: -7
Score: 3.5
Sequence: AAAAATGATGAACGTAATAAAT
Locus tag: KT99_05767
KT99_05767 -313 3.6 AAATGTTAAACACTTAGCATAC
-247 3.6 TTTATTGATCTAAATTAAGATT
-7 3.5 AAAAATGATGAACGTAATAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtrC
Ortholog function: surface localized decaheme cytochrome c lipoprotein, MtrC
Shewanella oneidensis MR-1 SO1778 -248 3.7 TGTTGTTTTTTTGCTCTCAATT
-190 3.5 TAGAAAGATCCAAGTCACACAT
Shewanella putrefaciens CN-32 Sputcn32_1478 -190 3.5 TAGAAAGATCCAAGTCACACAT
Shewanella sp W3-18-1 Sputw3181_2623 -190 3.5 TAGAAAGATCCAAGTCACACAT
Shewanella sp ANA-3 Shewana3_2676 -189 3.5 TAGAAAGATCCAAGTCACACAT
Shewanella sp MR-4 Shewmr4_2510 -189 3.5 TAGAAAGATCCAAGTCACACAT
Shewanella sp MR-7 Shewmr7_2578 -189 3.5 TAGAAAGATCCAAGTCACACAT
Shewanella baltica OS155 Sbal_1589 -190 3.5 TAGAAAGATCCAAGTCACACAT
Shewanella frigidimarina NCIMB 400 Sfri_2637 -164 3.8 TAGGCTGATCATCATCACACAA
Shewanella amazonensis SB2B Sama_1208 -230 3.9 TTTTTTGATCTGAAACAGCTTT
-178 3.6 TAGCCGGATCCAGTTCACACAT
Shewanella loihica PV-4 Shew_2525 -179 3.6 TAGAAAGATCTCGGTCACACAT
Shewanella halifaxensis HAW-EB4 Shal_2784 -264 4 TTTTATTACATTTATCACGTAT
Shewanella sediminis HAW-EB3 Ssed_1525 -191 4 TAGGCTGATCTAGGTCACACAT
Shewanella woodyi ATCC 51908 Swoo_3125 -288 3.7 ATGAGTTACAACTTTCACACAT
Position: -264
Score: 5.2
Sequence: AAGTGTGATCTTGATCACGATA
Position: -181
Score: 3.9
Sequence: TTATTTGATTACAATCATTTAT
Position: -158
Score: 4.4
Sequence: AGTTGGGACTTTTATCACATAA
Locus tag: KT99_05782
KT99_05782 -264 5.2 AAGTGTGATCTTGATCACGATA
-181 3.9 TTATTTGATTACAATCATTTAT
-158 4.4 AGTTGGGACTTTTATCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoA
Ortholog function: Ferrous iron transport protein A
Shewanella oneidensis MR-1 SO1783 -153 4 CATAGAGATTTTTGTCACATAA
Shewanella putrefaciens CN-32 Sputcn32_1480 -155 4.6 CATTGGGATTTTTATCACATAA
Shewanella sp W3-18-1 Sputw3181_2621 -155 4.6 CATTGGGATTTTTATCACATAA
Shewanella sp ANA-3 Shewana3_2671 -276 5 AAGTGTGATCTTGTTCTCACTT
-153 4.4 CATTGAGATTTTTGTCACATAA
Shewanella sp MR-4 Shewmr4_2505 -276 5 AAGTGTGATCTTGTTCTCACTT
-153 4.4 CATTGAGATTTTTGTCACATAA
Shewanella sp MR-7 Shewmr7_2573 -276 5 AAGTGTGATCTTGTTCTCACTT
-153 4.4 CATTGAGATTTTTGTCACATAA
Shewanella baltica OS155 Sbal_1594 -276 5 AAGCGTGATGTTGATCACGTTT
Shewanella denitrificans OS217 Sden_2415 -148 3.9 ATCTGCGGTATTTATCACATAA
Shewanella amazonensis SB2B Sama_1214 -228 3.8 AAGTGTGATGAGTGTCACGCCG
Shewanella loihica PV-4 Shew_2518 -245 5.2 ATATGTGATCTAGATCACGTTG
-155 4.2 GATTGAGATATCTGTCACATAA
Shewanella pealeana ATCC 700345 Spea_2691 -247 5.5 TTATGTGATGCGTATCACACTT
-158 4.2 AGTTGAGAGTTTTGTCACATAA
Shewanella halifaxensis HAW-EB4 Shal_2777 -279 4.7 AAGTGTGATCTGTGTCAAGTTT
-158 4.7 AGTTGAGATATTTATCACATAA
Shewanella piezotolerans WP3 swp_3271 -280 4.6 AAGCGTGATCTACGTCACACTG
-157 4.2 AGTTGAGAGATTTGTCACATAA
Shewanella sediminis HAW-EB3 Ssed_1531 -275 4.9 AAGTGTGATCTTGGTCACGCTA
-158 4.3 AGTTGAGACTTTTGTCACATAA
Shewanella woodyi ATCC 51908 Swoo_3123 -272 4.7 AATCGTGACTTATATCACTTAA
-157 4.2 AGTTGGGACTTTTGTCACATAA
Position: -269
Score: 4.4
Sequence: AAGTTTGAACTCGATCAAATAA
Locus tag: KT99_05797
KT99_05797 -269 4.4 AAGTTTGAACTCGATCAAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1787
Ortholog function: probable membrane protein YPO2362
Shewanella oneidensis MR-1 SO1787 -149 4.2 AACTGAGATCCTGATCACACAG
Shewanella putrefaciens CN-32 Sputcn32_1483 -154 4 AACTGAGATCGGGATCACATGA
Shewanella sp W3-18-1 Sputw3181_2618 -154 4 AACTGAGATCGGGATCACATGA
Shewanella sp ANA-3 Shewana3_2668 -151 4.4 AACTGAGATCCTGATCACATAG
Shewanella sp MR-4 Shewmr4_2502 -151 3.7 AACTGAGATCCTGATCACACCG
Shewanella sp MR-7 Shewmr7_2570 -151 3.7 AACTGAGATCCTGATCACACCG
Shewanella baltica OS155 Sbal_1597 -156 4.2 AACTGAGATCCTGATCACACAG
Position: -138
Score: 4.7
Sequence: TTATTTGATCGAGTTCAAACTT
Locus tag: KT99_05802
KT99_05802 -138 4.7 TTATTTGATCGAGTTCAAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: miaE
Ortholog function: tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-)
Shewanella oneidensis MR-1 SO1788 -151 4.3 CTGTGTGATCAGGATCTCAGTT
-12 3.7 TTGAGTGATCCCATGCAACAAT
Shewanella putrefaciens CN-32 Sputcn32_1484 -105 4.5 TCATGTGATCCCGATCTCAGTT
Shewanella sp W3-18-1 Sputw3181_2617 -105 4.5 TCATGTGATCCCGATCTCAGTT
Shewanella sp ANA-3 Shewana3_2667 -150 4.5 CTATGTGATCAGGATCTCAGTT
Shewanella sp MR-4 Shewmr4_2501 -151 4.1 CGGTGTGATCAGGATCTCAGTT
Shewanella sp MR-7 Shewmr7_2569 -150 4.1 CGGTGTGATCAGGATCTCAGTT
Shewanella baltica OS155 Sbal_1598 -149 4.3 CTGTGTGATCAGGATCTCAGTT
Position: -107
Score: 3.8
Sequence: AAATGTGATATTCCCCTAAAAG
Locus tag: KT99_12319
KT99_12319 -107 3.8 AAATGTGATATTCCCCTAAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: fumB
Ortholog function: Fumarate hydratase class I, aerobic (EC 4.2.1.2)
Shewanella oneidensis MR-1 SO2222 -105 4.6 AAATGTGATGTAGCCCAAAAAG
Shewanella putrefaciens CN-32 Sputcn32_1807 -103 4.6 AAATGTGATGTAGCCCAAAAAG
Shewanella sp W3-18-1 Sputw3181_2218 -103 4.6 AAATGTGATGTAGCCCAAAAAG
Shewanella sp ANA-3 Shewana3_2302 -104 4.6 AAATGTGATGTAGCCCAAAAAG
Shewanella sp MR-4 Shewmr4_2124 -104 4.6 AAATGTGATGTAGCCCAAAAAG
Shewanella sp MR-7 Shewmr7_2200 -104 4.6 AAATGTGATGTAGCCCAAAAAG
Shewanella baltica OS155 Sbal_1918 -103 4.6 AAATGTGATGTAGCCCAAAAAG
Shewanella denitrificans OS217 Sden_1912 -131 3.9 AAATGTGATGTAGCCCCAAAAG
Shewanella frigidimarina NCIMB 400 Sfri_2156 -122 4.6 AAATGTGATGTAGCCCAAAAAG
Shewanella amazonensis SB2B Sama_1688 -144 4.2 ACTTGTGATGTAGCCCAAAGAT
Shewanella loihica PV-4 Shew_1904 -111 3.9 AAATGTGATGTTCCCCTAAAAG
-73 4.8 TATTGTGAACGGATTCAAAAAA
Shewanella pealeana ATCC 700345 Spea_2038 -162 4.3 AAATGTGATGTTTAACTCAAAC
Shewanella halifaxensis HAW-EB4 Shal_2256 -162 4.3 AAATGTGATGTTTAACTCAAAC
Shewanella piezotolerans WP3 swp_2633 -162 4.4 AAATGTGATGTTTAACTCAAAG
Shewanella sediminis HAW-EB3 Ssed_2358 -194 3.8 AAATGTGATATTCCCCTAAAAG
Position: -245
Score: 4.6
Sequence: TTTTGTGATGTTCATCAAAGCT
Locus tag: KT99_17565
KT99_17565 -245 4.6 TTTTGTGATGTTCATCAAAGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmA
Ortholog function: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Shewanella oneidensis MR-1 SO0263 -222 4.2 TTTTGTGATTAGAATCTCAGCA
Shewanella putrefaciens CN-32 Sputcn32_3727 -213 3.9 TTTTGTGATTAGAATCTCAGCG
Shewanella sp W3-18-1 Sputw3181_0188 -213 3.9 TTTTGTGATTAGAATCTCAGCG
Shewanella sp ANA-3 Shewana3_0231 -222 4.2 TTTTGTGATTAGAATCTCAGCA
Shewanella sp MR-4 Shewmr4_0231 -222 4.2 TTTTGTGATTAGAATCTCAGCA
Shewanella sp MR-7 Shewmr7_0226 -222 3.9 TTTTGTGATTAGAATCTCAGCG
Shewanella baltica OS155 Sbal_0228 -212 4.4 TTTTGTGATTAGAATCTCAACA
Shewanella denitrificans OS217 Sden_3569 -186 4 TTTTGTGATAAGCCTCCCAGCT
Shewanella frigidimarina NCIMB 400 Sfri_0179 -213 4.2 TTTTGTGATAACAATCTCAGCT
Shewanella amazonensis SB2B Sama_0245 -207 3.8 TTTTGTGAGTTCCCTCCCAGCT
Shewanella loihica PV-4 Shew_0190 -223 4.8 TTTTGTGATTAATATCAGAATT
Shewanella pealeana ATCC 700345 Spea_0215 -212 4.1 TTTTGTGATATTAATCTCGCCA
-112 3.8 ATATTCGAACTACATCAAATTG
Shewanella halifaxensis HAW-EB4 Shal_4104 -212 3.9 TTTTGTGACATAAACCGTACTA
-112 3.8 ATATTCGAACTACATCAAATTG
Shewanella piezotolerans WP3 swp_2043 -212 5 ATTTGTGATTTAAATCGCGTTA
-112 3.8 ATATTCGAACTACATCAAATTG
Shewanella sediminis HAW-EB3 Ssed_4287 -223 4.5 TTTTGTGATTTCAATCAAAGCT
Shewanella woodyi ATCC 51908 Swoo_4659 -224 4.2 TTTTATGACTTTAATCAAAGTA
Position: -147
Score: 4.4
Sequence: AGCTTTGATGAACATCACAAAA
Locus tag: KT99_17570
KT99_17570 -147 4.4 AGCTTTGATGAACATCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: scyA
Ortholog function: cytochrome c-type protein
Shewanella oneidensis MR-1 SO0264 -234 4 CAATTTGATATGGTTCCAATAA
-125 4.1 TGCTGAGATTCTAATCACAAAA
Shewanella putrefaciens CN-32 Sputcn32_3726 -229 4 CAATTTGATGTGGTTCCAATAA
-129 3.7 CGCTGAGATTCTAATCACAAAA
Shewanella sp W3-18-1 Sputw3181_0189 -229 4 CAATTTGATGTGGTTCCAATAA
-129 3.7 CGCTGAGATTCTAATCACAAAA
Shewanella sp ANA-3 Shewana3_0232 -234 4 CAATTTGATGTGGTTCCAATAA
-125 4.1 TGCTGAGATTCTAATCACAAAA
Shewanella sp MR-4 Shewmr4_0232 -234 4 CAATTTGATGTGGTTCCAATAA
-125 4.1 TGCTGAGATTCTAATCACAAAA
Shewanella sp MR-7 Shewmr7_0227 -234 4 CAATTTGATGTGGTTCCAATAA
-125 3.7 CGCTGAGATTCTAATCACAAAA
Shewanella baltica OS155 Sbal_0229 -228 3.9 CAATATGATGTGGTTCCAATAA
-128 4.5 TGTTGAGATTCTAATCACAAAA
Shewanella denitrificans OS217 Sden_3568 -131 3.8 AGCTGGGAGGCTTATCACAAAA
-109 4.1 AGGTGTGATTTTATTAACTTTA
Shewanella frigidimarina NCIMB 400 Sfri_0180 -233 3.9 CAATTTGATATGGTTCCAAAAT
-133 4.1 AGCTGAGATTGTTATCACAAAA
Shewanella amazonensis SB2B Sama_0246 -225 4 CAATTTGATGCAGTTCCAATAA
Shewanella loihica PV-4 Shew_0191 -242 3.8 CAATTTGATATGCTTCCAAAAA
-131 4.8 AATTCTGATATTAATCACAAAA
Shewanella pealeana ATCC 700345 Spea_0216 -230 4.4 CAATTTGATGTAGTTCGAATAT
-130 4 TGGCGAGATTAATATCACAAAA
Shewanella halifaxensis HAW-EB4 Shal_4103 -230 4.4 CAATTTGATGTAGTTCGAATAT
Shewanella piezotolerans WP3 swp_2044 -231 4.4 CAATTTGATGTAGTTCGAATAT
-131 4.8 TAACGCGATTTAAATCACAAAT
Shewanella sediminis HAW-EB3 Ssed_4286 -145 4.4 AGCTTTGATTGAAATCACAAAA
Shewanella woodyi ATCC 51908 Swoo_4658 -256 3.8 CAATTTGATATGCTTCCAAAAA
-144 3.9 TACTTTGATTAAAGTCATAAAA
Position: -101
Score: 3.4
Sequence: TTATGCGACACAGGTCAGACCA
Position: -71
Score: 4.8
Sequence: AATTGTGATAATGATCAGAAAA
Locus tag: KT99_11418
KT99_11418 -101 3.4 TTATGCGACACAGGTCAGACCA
-71 4.8 AATTGTGATAATGATCAGAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadE2
Ortholog function: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Shewanella oneidensis MR-1 SO2536 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella putrefaciens CN-32 Sputcn32_1791 -72 4.6 AATTGTGATCGCCATCAATAAA
Shewanella sp W3-18-1 Sputw3181_2234 -72 4.6 AATTGTGATCGCCATCAATAAA
Shewanella sp ANA-3 Shewana3_2323 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella sp MR-4 Shewmr4_2146 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella sp MR-7 Shewmr7_2223 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella baltica OS155 Sbal_2306 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella denitrificans OS217 Sden_1764 -66 3.8 ACTTGTGAATAGGATCATCATA
Shewanella frigidimarina NCIMB 400 Sfri_1869 -67 3.8 TCTTGTGAATGAGATCAATAAT
Shewanella amazonensis SB2B Sama_1870 -64 4.3 ACTTGTGATCAGGATCGCTTAT
Shewanella loihica PV-4 Shew_2108 -71 4.9 AATTGTGATTATGGTCATATAA
Shewanella pealeana ATCC 700345 Spea_2393 -70 4.5 AATTGTGAGATAGAACTCAAAA
Shewanella halifaxensis HAW-EB4 Shal_1890 -70 4.3 AATTGTGAGATAAACCTCAAAA
Shewanella piezotolerans WP3 swp_2312 -97 3.5 AATTGTGACGTAGACCCGCAAA
Shewanella sediminis HAW-EB3 Ssed_1999 -71 4.5 AATTGTGATTATGATCAATAAA
Shewanella woodyi ATCC 51908 Swoo_2604 -73 4.8 AATTGTGATATCGATCAATATA
Position: -199
Score: 4.7
Sequence: TTTTCTGATCATTATCACAATT
Position: -169
Score: 3.8
Sequence: TGGTCTGACCTGTGTCGCATAA
Locus tag: KT99_11423
KT99_11423 -199 4.7 TTTTCTGATCATTATCACAATT
-169 3.8 TGGTCTGACCTGTGTCGCATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2535
Ortholog function: Predicted glutamine amidotransferase
Shewanella oneidensis MR-1 SO2535 -194 4.4 TTTGTTGATTGCGATCACAATT
Shewanella putrefaciens CN-32 Sputcn32_1792 -193 4.7 TTTATTGATGGCGATCACAATT
Shewanella sp W3-18-1 Sputw3181_2233 -193 4.7 TTTATTGATGGCGATCACAATT
Shewanella sp ANA-3 Shewana3_2322 -133 4.4 TTTGTTGATTGCGATCACAATT
Shewanella sp MR-4 Shewmr4_2145 -193 4.4 TTTGTTGATTGCGATCACAATT
Shewanella sp MR-7 Shewmr7_2222 -193 4.4 TTTGTTGATTGCGATCACAATT
Shewanella baltica OS155 Sbal_2305 -193 4.4 TTTGTTGATTGCGATCACAATT
Shewanella denitrificans OS217 Sden_1765 -204 3.7 TATGATGATCCTATTCACAAGT
Shewanella frigidimarina NCIMB 400 Sfri_1870 -203 3.9 ATTATTGATCTCATTCACAAGA
Shewanella amazonensis SB2B Sama_1869 -195 3.9 ATAAGCGATCCTGATCACAAGT
Shewanella loihica PV-4 Shew_2107 -191 4.6 TTATATGACCATAATCACAATT
Shewanella pealeana ATCC 700345 Spea_2392 -196 4.4 TTTTGAGTTCTATCTCACAATT
Shewanella halifaxensis HAW-EB4 Shal_1891 -199 4.2 TTTTGAGGTTTATCTCACAATT
Shewanella sediminis HAW-EB3 Ssed_2000 -191 4.5 TTTATTGATCATAATCACAATT
Shewanella woodyi ATCC 51908 Swoo_2603 -190 4.8 TATATTGATCGATATCACAATT
Position: -116
Score: 4.8
Sequence: AATTGTGATCTTAATATCAATT
Locus tag: KT99_09508
KT99_09508 -116 4.8 AATTGTGATCTTAATATCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hmgR
Ortholog function: Tyrosine degradation transcriptional regulator, LysR family
Shewanella oneidensis MR-1 SO1965 -148 4.4 TACTGTGATCTTCTTATCAATT
Shewanella putrefaciens CN-32 Sputcn32_1672 -148 4.8 TTATGTGATCTTGTTATCAATT
Shewanella sp W3-18-1 Sputw3181_2353 -148 4.8 TTATGTGATCTTGTTATCAATT
Shewanella sp ANA-3 Shewana3_2480 -148 4.6 TAGTGTGATCTTCTTATCAATT
-92 3.9 ATCTGTTATCTCAATCTAAAAA
Shewanella sp MR-4 Shewmr4_2290 -148 4.6 TAGTGTGATCTTCTTATCAATT
-92 3.9 ATCTGTTATCTCAATCTAAAAA
Shewanella sp MR-7 Shewmr7_2362 -148 4.6 TAGTGTGATCTTCTTATCAATT
-92 3.9 ATCTGTTATCTCTATCTAAAAA
Shewanella baltica OS155 Sbal_2614 -148 4.7 TAGTGTGATCTTGTTATCAATT
Shewanella denitrificans OS217 Sden_2161 -146 4.3 CGTTGTGATCTAGCTATCAATT
Shewanella frigidimarina NCIMB 400 Sfri_2325 -135 5.1 ATATGTGATCTAACTTACAATT
Shewanella amazonensis SB2B Sama_1570 -135 4.7 ATATGTGATCTGGGTATCAATT
Shewanella loihica PV-4 Shew_2153 -115 5.1 TTATGTGATCTAAGTAACAATT
Shewanella pealeana ATCC 700345 Spea_1875 -114 4.3 TAATGTGATCTAGGTTCAATTT
Shewanella halifaxensis HAW-EB4 Shal_2408 -114 4.5 TAATGTGATCTAGCTTTAATTT
Shewanella piezotolerans WP3 swp_2869 -115 4.9 TAATGTGATCTTGTTATCAATT
Shewanella sediminis HAW-EB3 Ssed_2686 -116 4.5 ATTTGTGACATACCTATCAATT
Shewanella woodyi ATCC 51908 Swoo_1933 -116 4.5 ATGTGTGATCTAAGTATCAATT
Position: -141
Score: 5.3
Sequence: AAATGTGATCTAGCTTACATTT
Locus tag: KT99_20943
KT99_20943 -141 5.3 AAATGTGATCTAGCTTACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lipB
Ortholog function: Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase
Shewanella oneidensis MR-1 SO1162 -68 5.1 AAGTGTGATCTATCTTACATTT
Shewanella putrefaciens CN-32 Sputcn32_2875 -69 5.3 AAATGTGATCTATCTTACATTT
Shewanella sp W3-18-1 Sputw3181_1028 -75 5.3 AAATGTGATCTATCTTACATTT
Shewanella sp ANA-3 Shewana3_0989 -74 5.2 AAATGTGATCTGTCTTACATTT
Shewanella sp MR-4 Shewmr4_0985 -74 5.2 AAATGTGATCTGTCTTACATTT
Shewanella sp MR-7 Shewmr7_1050 -74 5.2 AAATGTGATCTGTCTTACATTT
Shewanella baltica OS155 Sbal_3281 -74 5.2 AAATGTGATCTGTCTTACATTT
Shewanella loihica PV-4 Shew_2941 -70 5.3 AAATGTGATCTACCTTACATTT
Shewanella pealeana ATCC 700345 Spea_3155 -76 5.2 AAATGTGATCCGTATTACATTT
Shewanella halifaxensis HAW-EB4 Shal_3240 -76 5.2 AAATGTGATCCGTATTACATTT
Shewanella piezotolerans WP3 swp_3928 -69 5.2 AAATGTGATCTGTCTTACATTT
Shewanella sediminis HAW-EB3 Ssed_3491 -75 5.3 AAATGTGATCTAGCTTACATTT
Shewanella woodyi ATCC 51908 Swoo_3714 -74 5.1 AAGTGTGATCTAGCTTACAATT
Position: -70
Score: 4.2
Sequence: GATTGTGACTTTAGTCACCTTT
Locus tag: KT99_11919
KT99_11919 -70 4.2 GATTGTGACTTTAGTCACCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2871
Ortholog function: arsenate reductase (EC 1.20.4.1)
Shewanella loihica PV-4 Shew_1840 -51 3.8 CCCTGTGACTCGGCTCACCTTT
Shewanella pealeana ATCC 700345 Spea_1970 -64 4.8 CATTGTGACTATGATCACAAAA
Shewanella halifaxensis HAW-EB4 Shal_2329 -64 5.1 ATTTGTGACTCTGGTCACAAAT
Shewanella sediminis HAW-EB3 Ssed_2438 -64 5 TTTTGTGACTTTGCTCACCTTT
Shewanella woodyi ATCC 51908 Swoo_2168 -66 4.2 CCTTGTGACTTCGCTCACCTTT
Position: -150
Score: 5.1
Sequence: TTATGTGATGATGATCAAAATT
Locus tag: KT99_13337
KT99_13337 -150 5.1 TTATGTGATGATGATCAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadD1
Ortholog function: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Shewanella oneidensis MR-1 SO2581 -155 5.1 TTATGTGATGATGATCAAAATT
Shewanella putrefaciens CN-32 Sputcn32_1761 -154 5.1 TTATGTGATGATGATCAAAATT
Shewanella sp W3-18-1 Sputw3181_2264 -154 5.1 TTATGTGATGATGATCAAAATT
Shewanella sp ANA-3 Shewana3_2386 -155 5.1 TTATGTGATGATGATCAAAATT
Shewanella sp MR-4 Shewmr4_2177 -155 5.1 TTATGTGATGATGATCAAAATT
Shewanella sp MR-7 Shewmr7_2254 -155 5.1 TTATGTGATGATGATCAAAATT
Shewanella baltica OS155 Sbal_1864 -156 5.1 TTATGTGATGATGATCAAAATT
Shewanella denitrificans OS217 Sden_1625 -189 4.1 TTATGTGATTATGGGCCCAAAT
Shewanella frigidimarina NCIMB 400 Sfri_1733 -165 4.7 TTATGTGATTATGATCGAAAAT
Shewanella amazonensis SB2B Sama_1934 -140 4.8 TTATGTGATGATTGTCAAAAAT
Shewanella loihica PV-4 Shew_2188 -149 4.9 TTGTGTGATGATGTTCAAAATT
Shewanella pealeana ATCC 700345 Spea_2448 -156 5 TTATGTGATGATAATCAAAATT
Shewanella halifaxensis HAW-EB4 Shal_1832 -155 5 TTATGTGATGATAATCAAAATT
Shewanella piezotolerans WP3 swp_2289 -153 5 ATATGTGATGATAATCAAAATT
Shewanella sediminis HAW-EB3 Ssed_2523 -151 5 TTATGTGATGATGATCATAATT
Shewanella woodyi ATCC 51908 Swoo_2110 -153 5.1 TTATGTGATGATGTTCAAAATT
Position: -92
Score: 4.4
Sequence: TGGGGTGATATTCATCACACTT
Locus tag: KT99_09303
KT99_09303 -92 4.4 TGGGGTGATATTCATCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2589
Ortholog function: isopenicillin N synthase
Shewanella frigidimarina NCIMB 400 Sfri_1487 -55 4 AAGTGTGACTAAGGTTACCATT
Shewanella loihica PV-4 Shew_1590 -85 4.3 AAACGTGATTTTTATCACACCC
Shewanella pealeana ATCC 700345 Spea_2507 -84 4.2 AAGCGTGATCTAGCTCACTCAC
Shewanella halifaxensis HAW-EB4 Shal_1764 -84 4.4 CAGCGTGATCTACGTCACATTG
Shewanella piezotolerans WP3 swp_3059 -87 4.2 GAATGTGATCTAGCTCACAGGT
Shewanella sediminis HAW-EB3 Ssed_2637 -51 5.1 AAACGTGATTTCAATCACACTT
Shewanella woodyi ATCC 51908 Swoo_2030 -82 4.2 CAAGGTGATTTATCTCACACAG
Position: -82
Score: 4.6
Sequence: AAGCGTGACTTAGATCTCATTA
Position: -42
Score: 3.8
Sequence: TAATATGATCTTCATTAATTTA
Locus tag: KT99_11859
KT99_11859 -82 4.6 AAGCGTGACTTAGATCTCATTA
-42 3.8 TAATATGATCTTCATTAATTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cdd
Ortholog function: cytidine deaminase (EC 3.5.4.5)
Shewanella oneidensis MR-1 SO2791 -82 4.1 AAACGCGAACTAACTCGCATTT
Shewanella putrefaciens CN-32 Sputcn32_1568 -131 3.8 TATGGTGAAATCGGTCAAATAC
-82 4.2 AAACGCGAGCTAACTCGCATTT
Shewanella sp W3-18-1 Sputw3181_2531 -131 3.8 TATGGTGAAATCGGTCAAATAC
-82 4.2 AAACGCGAGCTAACTCGCATTT
Shewanella sp ANA-3 Shewana3_2573 -82 4.1 AAACGCGAACTAACTCGCATTT
Shewanella sp MR-4 Shewmr4_2411 -82 4.1 AAACGCGAACTAACTCGCATTT
Shewanella sp MR-7 Shewmr7_2481 -82 4.1 AAACGCGAACTAACTCGCATTT
Shewanella baltica OS155 Sbal_1694 -157 3.8 ATTCGTGAATAGACTCACTCTA
-82 4.2 AAACGCGAGCTAACTCGCATTT
Shewanella frigidimarina NCIMB 400 Sfri_1637 -44 3.8 AAATTTTATTTTTATCCAATTT
Shewanella amazonensis SB2B Sama_1974 -82 4 AAATGGGATTAGACTCCCATTA
Shewanella halifaxensis HAW-EB4 Shal_1783 -81 3.9 AACTGAGATCTTCATCTCATTC
Shewanella piezotolerans WP3 swp_3037 -82 4.1 AAGTGCGATCTCTGTCGCATTC
Shewanella sediminis HAW-EB3 Ssed_2618 -82 3.9 AAATGGGAGCTGGATCTCATCA
Shewanella woodyi ATCC 51908 Swoo_2048 -82 3.9 AAATGGGAGAAAGATCCCATTA
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