Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagated regulons of Shewanella benthica KT99

Type Regulator Effector Pathway Genes Sites
TF ArgR Arginine Arginine degradation; Arginine biosynthesis 15 34
TF BirA Biotin Biotin biosynthesis 2 2
TF Crp Cyclic 3',5'-AMP Carbon catabolism 162 288
TF CueR Copper ion, (Cu+) Copper resistance 2 2
TF DeoR Nucleoside utilization 1 1
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 7 7
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 3 3
TF Fnr Oxygen Anaerobic metabolism 25 29
TF Fur Iron ion, (Fe2+) Iron homeostasis 21 27
TF GcvA Glycine Glycine metabolism 5 5
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 14 25
TF HmgQ 4-hydroxyphenylpyruvate Tyrosine degradation 2 2
TF HutC cis-Urocanic acid Histidine utilization 2 3
TF HypR Proline; 4-hydroxyproline Proline and 4-hydrohyproline utilization 3 3
TF IlvY Acetohydroxybutyrate; 2-Acetolactate Branched-chain amino acid biosynthesis 2 4
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 5 7
TF LexA DNA damage SOS response 8 10
TF LiuR Branched-chain amino acid degradation 6 7
TF MetR Homocysteine Methionine biosynthesis 3 5
TF NagR N-acetylglucosamine N-acetylglucosamine utilization 1 1
TF NarP Nitrite; Nitrate Nitrate and nitrite respiration 14 15
TF NhaR Potassium ion Osmotic stress response 2 2
TF NorR Nitric oxide Nitrosative stress response 3 7
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 2 3
TF NsrR Nitric oxide Nitrosative stress response 3 3
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 3 6
TF PdhR Pyruvate Pyruvate metabolism 3 3
TF PrpR 2-methylcitrate Methylcitrate utilization 1 2
TF PsrA Oleate Fatty acid degradation 15 17
TF PUR Purine metabolism 3 3
TF SdaR Glycerate Glycerate utilization 1 1
TF SO0072 Hypothetical ABC transporter 2 2
TF SO1415 1 1
TF SO4468 2 2
TF SO4705 2 2
TF TrpR Tryptophan Aromatic amino acid metabolism 2 2
TF TyrR Tyrosine; Phenylalanine Amino acid utilization 16 22
TF ZntR Zinc ion, (Zn2+); Cadmium, ion (Cd2+) Zinc resistance; Cadmium resistance 1 1
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