Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagated regulons of Pectobacterium carotovorum subsp. carotovorum PC1

Type Regulator Effector Pathway Genes Sites
TF AcrR Rhodamine 6G; Ethidium bromide; Proflavin Multidrug resistance 2 2
TF AraC Arabinose Arabinose utilization 4 5
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 11 24
TF AscG Cellobiose-6-phosphate; Beta-glucoside-6-phosphate Beta-glucosides utilization; Cellobiose utilization 5 5
TF BetI Choline Glycine betaine synthesis 2 2
TF Crp Cyclic 3',5'-AMP Carbon catabolism 175 393
TF CueR Copper ion, (Cu+) Copper resistance 2 2
TF DeoR Deoxyribonucleoside utilization 3 4
TF ExuR Galacturonate Galacturonate utilization 8 14
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 4 4
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 9 9
TF Fnr Oxygen Energy metabolism; Anaerobic metabolism 77 154
TF FruR Fructose-1-phosphate; Fructose-1,6-diphosphate Central carbohydrate metabolism 12 14
TF Fur Iron ion, (Fe2+) Iron homeostasis 51 199
TF GalR/GalS Galactose Galactose utilization 5 9
TF GcvA Glycine Glycine metabolism 2 3
TF GlpR Glycerol 3-phosphate Glycerol utilization 5 10
TF GntR Gluconate Gluconate utilization 2 4
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 4 5
TF IclR Pyruvate; Glyoxylate Glyoxylate bypass 1 1
TF IlvY 2-Acetolactate Branched-chain amino acid biosynthesis 2 4
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 2 2
TF KdgR 2-keto-3-deoxygluconate Pectin and polygalacturonate utlization 29 50
TF LacI Allolactose Lactose utilization 1 1
TF LexA DNA damage SOS response 14 16
TF LfaR Sugar utilization 2 3
TF LysR LL-2,6-Diaminopimelate Lysine biosynthesis 2 2
TF MetR Homocysteine Methionine biosynthesis 6 10
TF ModE Molybdate Molybdopterin biosynthesis; Molybdenum homeostasis 5 5
TF MprA 2,4-Dinitrophenol; Carbonyl cyanide m-chlorophenylhydrazone Multidrug resistance 3 3
TF NadR NAD NAD biosynthesis 2 3
TF NagC N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 3 5
TF NarP Nitrate; Nitrite Nitrate and nitrite respiration 16 25
TF NhaR Potassium ion Osmotic stress response 1 2
TF NorR Nitric oxide Nitrosative stress response 1 1
TF NrdR Deoxyribonucleotides Ribonucleotide reductases 3 6
TF NsrR Nitric oxide Nitrosative stress response 7 10
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 8 16
TF PdhR Pyruvate Pyruvate metabolism 2 2
TF PhnF Phosphonate utilization 1 1
TF PurR Hypoxanthine; Guanine Purine metabolism 20 21
TF QorR Energy metabolism 2 2
TF RbsR Ribose Ribose utilization 1 2
TF RhaR Rhamnose Rhamnose utilization 2 2
TF RhaS Rhamnose Rhamnose utilization 6 6
TF SdaR Glycerate Glucarate utilization; Galactarate utilization 2 3
TF TrpR Tryptophan Tryptophan biosynthesis 2 2
TF TyrR Tyrosine; Phenylalanine Aromatic amino acid metabolism 5 7
TF UxuR Glucuronate Glucuronate utilization 4 4
TF YiaJ Ascorbate-6-phosphate L-lyxose utilization 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 6 7
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