Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of GalR/GalS regulog to Pectobacterium carotovorum subsp. carotovorum PC1

Reference regulog properties
Source regulog: GalR/GalS - Enterobacteriales
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor (activator)
Biological process: Galactose utilization
Effector: Galactose
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Pectobacterium carotovorum subsp. carotovorum PC1
Orthologous TF(s) PC1_2954
Regulated genes 5
Built upon 78 sites [see more]
Predicted regulatory interactions in Pectobacterium carotovorum subsp. carotovorum PC1
Locus tag Position Score Sequence
Position: -64
Score: 5
Sequence: AAAAGTAATCGATTACATTT
Locus tag: PC1_1276
PC1_1276 -64 5 AAAAGTAATCGATTACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ECA1400
Ortholog function: putative nucleoside H+ symporter
Citrobacter koseri ATCC BAA-895 CKO_02603 -70 5.1 TTTTGTAATCGATTACTTTT
-38 4.9 ATTTGTAATCGATTACTTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00538 -66 5.1 TTTTGTAATCGATTACTTTT
-35 5.1 TTTTGTAATCGATTACTTTT
Enterobacter sp. 638 Ent638_1060 -68 5.1 TTTTGTAATCGATTACTTTT
-37 5.1 TTTTGTAATCGATTACTTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1400 -64 5 AAAAGTAATCGATTACATTT
-34 5.1 GATTGTAATCGATTACTTTT
Position: -243
Score: 6.1
Sequence: TAGGGTAACCGATTACACTA
Locus tag: PC1_2953
PC1_2953 -243 6.1 TAGGGTAACCGATTACACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: galT
Ortholog function: galactose-1-phosphate uridylyltransferase
Escherichia coli str. K-12 substr. MG1655 b0758 -96 6.6 TTGTGTAAACGATTCCACTA
Salmonella typhimurium LT2 STM0775 -96 6.4 GTGTGTAAACGATTCCACTA
Citrobacter koseri ATCC BAA-895 CKO_02377 -54 6.4 AAGTGTAAACGATTCCACTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00772 -252 4.9 CAGTGGAGACGGTTACACTT
-96 6.4 AAGTGTAAACGATTCCACTA
Enterobacter sp. 638 Ent638_1249 -96 6.2 CGGTGTAACCGATTCCACTA
Erwinia amylovora ATCC 49946 EAM_1197 -197 5.1 CTATGTAATCGTTTTCAACA
-108 6.4 TAGTGTAAACGATTCCATTT
Yersinia pestis KIM y3044 -95 6.4 GAGTGTAAACGATTCCATTA
Serratia proteamaculans 568 Spro_1292 -160 6.1 CTGTGTAAACGATTCCATTT
-50 5 AGGTGAAAGCGATTACACAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3171 -240 6 TAGGGTAACCGATTACACTT
-152 5 TAGTGAAACTGATTACATTG
Edwardsiella tarda EIB202 ETAE_2565 -195 5.5 TAGTGTAAGCGATACCACAA
-95 6.4 TAGTGTAAACGATTCCATTT
Proteus mirabilis HI4320 PMI1950 -259 5.3 TAATGTAATCGTTTACTTTT
-126 6.1 GCGTGTAAACGTTTACACTA
Position: -328
Score: 5.2
Sequence: GAATGTAATCATTTTCACTA
Position: -240
Score: 5.6
Sequence: TAGTGTAATCGGTTACCCTA
Locus tag: PC1_2954
PC1_2954 -328 5.2 GAATGTAATCATTTTCACTA
-240 5.6 TAGTGTAATCGGTTACCCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: galR
Ortholog function: galactose operon repressor galR
Escherichia coli str. K-12 substr. MG1655 b2837 -32 5.2 GAATGTAAGCGTTTACCCAC
Salmonella typhimurium LT2 STM3011 -33 5.3 TAATGTAAGCGTTTACCCAC
Citrobacter koseri ATCC BAA-895 CKO_04211 -33 5.1 AAATGTAAGCGTTTACCCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03246 -33 5.5 GTATGTAAACGCTTACCCTA
Enterobacter sp. 638 Ent638_3278 -35 5.3 GTGTGTAAACGCTTACCCCC
Erwinia amylovora ATCC 49946 EAM_2770 -35 4.9 AAATGTAAACGCTTACCCAG
Yersinia pestis KIM y3183 32 5.4 TGATGTAAGCGGTTACCCTA
Serratia proteamaculans 568 Spro_3832 -34 5.2 GAATGTAAGCGATTACCCAG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3172 -240 5.3 AAGTGTAATCGGTTACCCTA
Edwardsiella tarda EIB202 ETAE_2890 -41 5.2 TGGTGTAAACGTTTACGGTT
Position: -177
Score: 5.3
Sequence: TTGTGCAAACGGTTACACCA
Locus tag: PC1_2957
PC1_2957 -177 5.3 TTGTGCAAACGGTTACACCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ganK
Ortholog function: oligogalactan ABC transporter, ATP-binding protein
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3174 -178 5.3 TTGTGCAAACGGTTACACCA
Position: -335
Score: 5.6
Sequence: TGGTGTAACCGTTTGCACAA
Locus tag: PC1_2958
PC1_2958 -335 5.6 TGGTGTAACCGTTTGCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ganE
Ortholog function: oligogalactan ABC transporter, substrate-binding periplasmic protein
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3175 -335 5.6 TGGTGTAACCGTTTGCACAA
-229 4.8 TGGTGTAACCGTTACCCTAG
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