Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of ExuR regulog to Pectobacterium carotovorum subsp. carotovorum PC1

Reference regulog properties
Source regulog: ExuR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Galacturonate utilization
Effector: Galacturonate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Pectobacterium carotovorum subsp. carotovorum PC1
Orthologous TF(s) PC1_0527
Regulated genes 8
Built upon 48 sites [see more]
Predicted regulatory interactions in Pectobacterium carotovorum subsp. carotovorum PC1
Locus tag Position Score Sequence
Position: -98
Score: 5.9
Sequence: TAAGTGGTATAACAAATCA
Locus tag: PC1_0527
PC1_0527 -98 5.9 TAAGTGGTATAACAAATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: exuR
Ortholog function: D-galacturonate transcriptional repressor, GntR family
Escherichia coli str. K-12 substr. MG1655 b3094 -47 6 AAAGTGGTATAACAAATAT
Citrobacter koseri ATCC BAA-895 CKO_04496 -47 6 AAAGTGGTATAACAAATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03522 -48 5.8 AAAGTGGTATAACAAATCG
Enterobacter sp. 638 Ent638_3548 -45 6.1 AAAGTGGTATAACAAATCA
Yersinia pestis KIM y3602 -105 5.8 TAAGTGGTATAACAAATCC
Serratia proteamaculans 568 Spro_4323 -57 5.8 TAAGTGGTATAACAAATCC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0643 -98 5.9 TAAGTGGTATAACAAATCA
Edwardsiella tarda EIB202 ETAE_0434 -68 5.8 AAAGTGGTATAACAACTCG
Position: -186
Score: 6.2
Sequence: AAAGTTGTATGACAAATTA
Locus tag: PC1_0528
PC1_0528 -186 6.2 AAAGTTGTATGACAAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: exuT
Ortholog function: Hexuronate transporter
Escherichia coli str. K-12 substr. MG1655 b3093 -129 6.2 AAAGTTGTATGACAAGTTA
Citrobacter koseri ATCC BAA-895 CKO_04495 -227 5.7 GAAGTTGTATGACAAGTTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03521 -240 6.2 AAAGTTGTATGACAAGTTA
Enterobacter sp. 638 Ent638_3547 -116 6.2 AAAGTTGTATGACAAGTTA
Yersinia pestis KIM y3601 -515 5.6 AAAtctGTATGACAAgTTa
Serratia proteamaculans 568 Spro_4322 -157 5.6 AAATCTGTATGACAAGTTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0644 -185 6.2 AAAGTTGTATGACAAATTA
Edwardsiella tarda EIB202 ETAE_0435 -282 5.2 GAATCTGTATGACAAGTTA
Position: -67
Score: 5.4
Sequence: TAATTGGTGTGATATCTTT
Locus tag: PC1_0529
PC1_0529 -67 5.4 TAATTGGTGTGATATCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxaC
Ortholog function: Uronate isomerase (EC 5.3.1.12)
Escherichia coli str. K-12 substr. MG1655 b3092 -71 6.2 AAATTGGTGTGATAACTTT
Citrobacter koseri ATCC BAA-895 CKO_04494 -8 6.2 AAATTGGTGTGATAACTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03520 -90 6.2 AAATTGGTGTGATAACTTT
Enterobacter sp. 638 Ent638_3546 -70 6.2 AAATTGGTGTGATAACTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0645 -67 5.4 TAATTGGTGTGATATCTTT
Position: -292
Score: 4.5
Sequence: ACATTGGTCTGATATCTCA
Position: -176
Score: 4.8
Sequence: AAATTGGTTTACCAAATTG
Locus tag: PC1_2354
PC1_2354 -292 4.5 ACATTGGTCTGATATCTCA
-176 4.8 AAATTGGTTTACCAAATTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: lfaR
Ortholog function: putative transcriptional regulator, LacI family
Citrobacter koseri ATCC BAA-895 CKO_02295 -157 5.8 TAAGTTGTGTGACAAGTTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00854 -195 4.5 TCATTGGTATAACTAGTAT
Enterobacter sp. 638 Ent638_1314 -175 5.6 GAAGTTGTGTGACAAGTTC
Serratia proteamaculans 568 Spro_3600 -196 4.8 TAATTGGACTGATAAATCT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1966 -176 4.8 AAATTGGTTTACCAAATTG
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