Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of GntR regulog to Pectobacterium carotovorum subsp. carotovorum PC1

Reference regulog properties
Source regulog: GntR - Enterobacteriales  
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Gluconate utilization
Effector: Gluconate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Pectobacterium carotovorum subsp. carotovorum PC1
Orthologous TF(s) PC1_3944
Regulated genes 2
Built upon 61 sites [see more]
Predicted regulatory interactions in Pectobacterium carotovorum subsp. carotovorum PC1
Locus tag Position Score Sequence
Position: -101
Score: 5.9
Sequence: ACATGTTACCCGTATCATGT
Position: -87
Score: 5.5
Sequence: TCATGTTACCGGTATCAAAT
Locus tag: PC1_3942
PC1_3942 -101 5.9 ACATGTTACCCGTATCATGT
-87 5.5 TCATGTTACCGGTATCAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntU
Ortholog function: Low-affinity gluconate transporter
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4158 -100 5.5 ACATGTTACCCGTATCATAT
Position: -91
Score: 5.3
Sequence: ATTTGATACCGGTAACATGA
Locus tag: PC1_3943
PC1_3943 -91 5.3 ATTTGATACCGGTAACATGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntK
Ortholog function: Thermoresistant gluconokinase (EC 2.7.1.12)
Yersinia pestis KIM y3876 -91 5.6 ATTTGTTACCGGTATCATGA
-77 5.5 TCATGATACCGGTAACATGG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4159 -77 5.3 ATATGATACGGGTAACATGT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1839 -91 5.4 ACTTGTTACCGGTATCATGA
-77 5.1 TCATGATACCGGTAACGTGA