Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of KdgR regulog to Pectobacterium carotovorum subsp. carotovorum PC1

Reference regulog properties
Source regulog: KdgR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: IclR
Regulation mode: repressor (activator)
Biological process: Pectin and polygalacturonate utlization
Effector: 2-keto-3-deoxygluconate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Pectobacterium carotovorum subsp. carotovorum PC1
Orthologous TF(s) PC1_1885
Regulated genes 29
Built upon 159 sites [see more]
Predicted regulatory interactions in Pectobacterium carotovorum subsp. carotovorum PC1
Locus tag Position Score Sequence
Position: -236
Score: 5.6
Sequence: ATATAAAACAGTATTTCATAT
Locus tag: PC1_0344
PC1_0344 -236 5.6 ATATAAAACAGTATTTCATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhiA
Ortholog function: predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit
Citrobacter koseri ATCC BAA-895 CKO_04899 -138 5.1 TTTTAAACCATCGTTTCAATT
-50 4.8 AACTAAAACAATGTTTTAACG
Enterobacter sp. 638 Ent638_3876 -134 4.5 TTTCAAACCATCGTTTCAAAA
-49 4.8 AACTAAAACAACGTTTTAACG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0357 -239 5.6 ATATAAAACAGCATTTCATAT
Position: -69
Score: 6.2
Sequence: AAATAAAACGGCGTTTCATTT
Locus tag: PC1_0532
PC1_0532 -69 6.2 AAATAAAACGGCGTTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ygjV
Ortholog function: putative transport protein
Escherichia coli str. K-12 substr. MG1655 b3090 -64 5.4 ATAAAAAACGGCGTTTCATAA
Yersinia pestis KIM y3597 -133 5.2 ATATGAAACGGTGTTCTGTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0648 -70 6.2 AAATAAAACGGCGTTTCATTT
Position: -97
Score: 6
Sequence: AAATAAAACATTGTTTCTTTT
Locus tag: PC1_0610
PC1_0610 -97 6 AAATAAAACATTGTTTCTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sghX
Ortholog function: putative exported protein
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0732 -98 5.6 AAATAAAACCTCGTTTCTTTT
-76 4 TATCACAATAAGGTTCCATTT
Position: -38
Score: 5.5
Sequence: AACTGAAATATTGTTTCATAT
Locus tag: PC1_0691
PC1_0691 -38 5.5 AACTGAAATATTGTTTCATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: togT
Ortholog function: Oligogalacturonide transporter
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02398 -46 5.2 TATAAAAACAGTGTTTCAAAA
Yersinia pestis KIM y2961 -47 4.5 AAAGAAAACAGTTATTCATTA
-25 6.1 AAATGAAACATTGTTTTAATT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0817 -60 4.5 TAAAGAAATGATAGTTCAATC
-38 5.5 AACTGAAATATTGTTTCATAT
Position: -37
Score: 5.7
Sequence: TATTAAAACGATATTTCATTA
Locus tag: PC1_1092
PC1_1092 -37 5.7 TATTAAAACGATATTTCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pehN
Ortholog function: putative polygalacturonase
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1190 -37 5.7 TATTAAAACGATATTTCATTA
Position: -88
Score: 5
Sequence: TAATGAAACATGATTTCTGTT
Locus tag: PC1_1651
PC1_1651 -88 5 TAATGAAACATGATTTCTGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sotA
Ortholog function: sugar efflux transporter
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2730 -88 5 TAATGAAACAAGATTTCTGTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2730 -88 5 TAATGAAACAAGATTTCTGTT
Position: -179
Score: 5.8
Sequence: AAATGAAACATTGTTTCTATA
Locus tag: PC1_1884
PC1_1884 -179 5.8 AAATGAAACATTGTTTCTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ogl
Ortholog function: Oligogalacturonate lyase (EC 4.2.2.6)
Enterobacter sp. 638 Ent638_3293 -226 5.1 AATTAAAACGCCGTTTTACAA
Yersinia pestis KIM y1875 -96 5.8 AAATGAAACATTGTTTCTATA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2426 -180 5.8 AAATGAAACATTGTTTCTATA
Position: -60
Score: 5.3
Sequence: AATCAAAACAGTGTTTCTATT
Locus tag: PC1_1908
PC1_1908 -60 5.3 AATCAAAACAGTGTTTCTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pelW
Ortholog function: Exopolygalacturonate lyase (EC 4.2.2.9)
Yersinia pestis KIM y1885 -152 4.5 AATCAAAACAACGTTCCGACT
-76 5.2 GATTGAAACGATGTTTCTATT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2402 -139 4.5 AATCAAAACAACGTTCCGACT
-61 5.3 AATCAAAACAGTGTTTCTATT
Position: -209
Score: 6.1
Sequence: AAATAAAACATTATTTCATTT
Locus tag: PC1_1910
PC1_1910 -209 6.1 AAATAAAACATTATTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kduI
Ortholog function: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
Escherichia coli str. K-12 substr. MG1655 b2843 -130 6.3 AAATGAAACATTGTTTTATTT
-63 5.4 AAACGAAACAGTGTTTCACTA
Salmonella typhimurium LT2 STM3018 -123 6.2 AAATGAAACGTTGTTTTATTT
-58 5.3 AATCAAAACAGTGTTTTGATT
Citrobacter koseri ATCC BAA-895 CKO_04220 -119 6.2 AAATGAAACAACGTTTTATTT
-51 4.4 AAACGGAACGGTGTTTCGCCT
Enterobacter sp. 638 Ent638_3296 -127 5.4 AACTGAAACAACGTTTTAAAT
-60 5 AATCGGAACATTGTTTCGTTA
Yersinia pestis KIM y1887 -201 6 TAATAAAACATCATTTCATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2400 -209 6.1 AAATAAAACATTATTTCATTT
Edwardsiella tarda EIB202 ETAE_1898 -129 5.6 AATCAAAACAGCATTTCATTT
Position: -178
Score: 6.1
Sequence: AAATGAAATAATGTTTTATTT
Locus tag: PC1_1911
PC1_1911 -178 6.1 AAATGAAATAATGTTTTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgF
Ortholog function: Pectin degradation protein KdgF
Citrobacter koseri ATCC BAA-895 CKO_04218 -38 5.6 AGTTGAAACATTGTTTCAATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03255 -39 5.8 AAATGAAACAATGTTTCACTT
Enterobacter sp. 638 Ent638_3287 -38 5.5 AATTAAAACAATGTTTCACTA
Yersinia pestis KIM y1888 -155 6 AAATGAAATGATGTTTTATTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2399 -174 6.1 AAATGAAATAATGTTTTATTT
Position: -259
Score: 5.1
Sequence: ATACGGAACGTCGTTTCAATT
Locus tag: PC1_2441
PC1_2441 -259 5.1 ATACGGAACGTCGTTTCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pykF
Ortholog function: Pyruvate kinase (EC 2.7.1.40)
Escherichia coli str. K-12 substr. MG1655 b1676 -286 5 TTTTGAAACGCTGTTTTTGTT
Salmonella typhimurium LT2 STM1378 -286 4.7 TTTTGAAACAGGGTTTTCATT
Citrobacter koseri ATCC BAA-895 CKO_01709 -286 5 TTTTGAAACGCTGTTTTCATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02133 -285 5 ATTTGAAACGAGGTTTTTATT
Enterobacter sp. 638 Ent638_1768 -286 5.1 TTTTGAAACGCCGTTTCCATT
Serratia proteamaculans 568 Spro_2187 -203 4.1 AAtaacAACAcatTTTCATcT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1867 -259 5.1 ATACGGAACGTCGTTTCAATT
Position: -227
Score: 5.7
Sequence: TATTAAAACACCATTTCATTA
Locus tag: PC1_2456
PC1_2456 -227 5.7 TATTAAAACACCATTTCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppsA
Ortholog function: Phosphoenolpyruvate synthase (EC 2.7.9.2)
Escherichia coli str. K-12 substr. MG1655 b1702 -222 5.3 TATGAAAACAGCATTTCATTT
Salmonella typhimurium LT2 STM1349 -226 4.9 AATGAAAAGTGTGTTTCATTT
Citrobacter koseri ATCC BAA-895 CKO_01725 -249 5.5 AAATGAAACGCTATTTTTATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02160 -254 5.1 AATTGAAACGCTATTTTTGTT
Enterobacter sp. 638 Ent638_1745 -249 5.3 AAATGAAATGGTGTTTTTAAT
Serratia proteamaculans 568 Spro_2174 -364 5.2 AAgTaAAACAcTaTTTCAaaT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1853 -227 5.6 TATTAAAACGCCATTTCATTA
Position: -58
Score: 5.7
Sequence: TAATGAAATGGTGTTTTAATA
Locus tag: PC1_2457
PC1_2457 -58 5.7 TAATGAAATGGTGTTTTAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppsR
Ortholog function: PEP synthetase regulatory protein
Escherichia coli str. K-12 substr. MG1655 b1703 -131 5.3 AAATGAAATGCTGTTTTCATA
Salmonella typhimurium LT2 STM1348 -131 4.9 AAATGAAACACACTTTTCATT
Citrobacter koseri ATCC BAA-895 CKO_01727 -107 5.5 TATAAAAATAGCGTTTCATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02161 -97 5.1 AACAAAAATAGCGTTTCAATT
Enterobacter sp. 638 Ent638_1744 -107 5.3 ATTAAAAACACCATTTCATTT
Serratia proteamaculans 568 Spro_2173 -134 5.2 ATTTGAAATAGTGTTTTACTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1852 -94 5.6 TAATGAAATGGCGTTTTAATA
Position: -54
Score: 5.1
Sequence: AATTGAAATACAGTTTTAAAA
Locus tag: PC1_2558
PC1_2558 -54 5.1 AATTGAAATACAGTTTTAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: spiX
Ortholog function: predicted 5-keto-4-deoxyuronate isomerase
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1742 -54 5.1 AATTGAAATACAGTTTTAAAA
Position: -213
Score: 5.6
Sequence: TATTAAAATAACATTTCATTT
Locus tag: PC1_3046
PC1_3046 -213 5.6 TATTAAAATAACATTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: paeY
Ortholog function: pectin acetylesterase
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3252 -213 5.1 TATTAAAATAACATTTCACTT
Position: -167
Score: 4.7
Sequence: AGTTAAAATGGCTTTTTATAA
Locus tag: PC1_3380
PC1_3380 -167 4.7 AGTTAAAATGGCTTTTTATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhiT
Ortholog function: Rhamnogalacturonide transporter
Citrobacter koseri ATCC BAA-895 CKO_01081 -190 5.4 AATAGAAACGCTGTTTTATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02390 -200 4.9 AAGAGAAATGCTGTTTTATAA
Enterobacter sp. 638 Ent638_2444 -189 5.6 AAAAGAAACGCTGTTTTATAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3560 -167 4.7 AGTTAAAATGCCTTTTTATAA
Position: -32
Score: 5.9
Sequence: AAAAGAAACGTTGTTTTATTT
Locus tag: PC1_3562
PC1_3562 -32 5.9 AAAAGAAACGTTGTTTTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dhfX
Ortholog function: putative exported protein
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3785 -32 5.9 AAAAGAAACGATGTTTTATTT
Position: -200
Score: 4.5
Sequence: TATTGAAACGTGATTTCTATC
Locus tag: PC1_3679
PC1_3679 -200 4.5 TATTGAAACGTGATTTCTATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: chmX
Ortholog function: methyl-accepting chemotaxis protein
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3902 -172 4.5 TATTGAAACGTGATTTCTATC
Position: -292
Score: 5.2
Sequence: TAAAGAAACTTTATTTTAATA
Position: -258
Score: 4.5
Sequence: AATCAAAACATTGATTTTTAA
Locus tag: PC1_3858
PC1_3858 -292 5.2 TAAAGAAACTTTATTTTAATA
-258 4.5 AATCAAAACATTGATTTTTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pelC
Ortholog function: Pectate lyase B precursor (EC 4.2.2.2)
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4069 -289 5.4 AAACGAAATATAATTTTATTT
-102 4.5 CAATAAACCTTGATTTCATTT
-2 4.1 AAATGAAACGTTCTCTTCTGT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4067 -231 4.2 AAATAGAAATCAGTTTCTATT
-99 4.5 AGACAAACCTTAATTTCATTT
-77 4.1 TGTTGAAACAGCCATTTTATT
Position: -97
Score: 4.7
Sequence: AAATGAAGCGTCATTTTTTTG
Locus tag: PC1_3859
PC1_3859 -97 4.7 AAATGAAGCGTCATTTTTTTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: pelC
Ortholog function: Pectate lyase B precursor (EC 4.2.2.2)
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4069 -289 5.4 AAACGAAATATAATTTTATTT
-102 4.5 CAATAAACCTTGATTTCATTT
-2 4.1 AAATGAAACGTTCTCTTCTGT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4067 -231 4.2 AAATAGAAATCAGTTTCTATT
-99 4.5 AGACAAACCTTAATTTCATTT
-77 4.1 TGTTGAAACAGCCATTTTATT
Position: -293
Score: 4.5
Sequence: TAATAAAACGAAATATAATTT
Position: -288
Score: 5.4
Sequence: AAACGAAATATAATTTTATTT
Position: -103
Score: 4.5
Sequence: CAATAAACCTTGATTTCATTT
Locus tag: PC1_3860
PC1_3860 -293 4.5 TAATAAAACGAAATATAATTT
-288 5.4 AAACGAAATATAATTTTATTT
-103 4.5 CAATAAACCTTGATTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pelC
Ortholog function: Pectate lyase B precursor (EC 4.2.2.2)
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4069 -289 5.4 AAACGAAATATAATTTTATTT
-102 4.5 CAATAAACCTTGATTTCATTT
-2 4.1 AAATGAAACGTTCTCTTCTGT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4067 -231 4.2 AAATAGAAATCAGTTTCTATT
-99 4.5 AGACAAACCTTAATTTCATTT
-77 4.1 TGTTGAAACAGCCATTTTATT
Position: -138
Score: 5.9
Sequence: TAATAAAACTACGTTTCATTT
Locus tag: PC1_3913
PC1_3913 -138 5.9 TAATAAAACTACGTTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rexZ
Ortholog function: transcriptional regulator of exoenzymes
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4123 -138 5.9 TAATAAAACTATGTTTCATTT
-66 4.4 AAATAAATTACCGTTGCGTTA
Position: -85
Score: 6.1
Sequence: TAATAAAACATCGTTTCATTT
Locus tag: PC1_4150
PC1_4150 -85 6.1 TAATAAAACATCGTTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: tpfX
Ortholog function: ThiJ/PfpI-family hypothetical protein
Salmonella typhimurium LT2 STM1931 -231 5.4 TTATGAAACATTGTTTCAGAT
Citrobacter koseri ATCC BAA-895 CKO_01049 -199 5.4 TTTTGAAATGATGTTTCATAT
Enterobacter sp. 638 Ent638_2477 -42 5 GGATGAAACGCTGTTTTAAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0102 -85 6.1 TAATAAAACATCGTTTCATTT
Position: -66
Score: 6
Sequence: AAAAGAAACAGCGTTTCATTT
Locus tag: PC1_4259
PC1_4259 -66 6 AAAAGAAACAGCGTTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pelX
Ortholog function: Pectate disaccharide-lyase
Enterobacter sp. 638 Ent638_4134 -102 5.2 AAGCAAAACAACGTTTTAATT
-60 5.7 AAAAGAAACGACGTTTCATCT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4510 -130 5.3 AAATGACACGGTGTTTCATAA
-113 4.2 ATAAAAAACAGACTTTATTTT
-66 6 AAAAGAAACAGCGTTTCATTT
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