Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of LysR regulog to Pectobacterium carotovorum subsp. carotovorum PC1

Reference regulog properties
Source regulog: LysR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode:
Biological process: Lysine biosynthesis
Effector: LL-2,6-Diaminopimelate
Phylum: Gammaproteobacteria
Propagated regulon:
Target genome Pectobacterium carotovorum subsp. carotovorum PC1
Orthologous TF(s) PC1_3487
Regulated genes 2
Built upon 24 sites [see more]
Predicted regulatory interactions in Pectobacterium carotovorum subsp. carotovorum PC1
Locus tag Position Score Sequence
Position: -107
Score: 5.3
Sequence: CATATCAGAAATGAATAG
Locus tag: PC1_3486
PC1_3486 -107 5.3 CATATCAGAAATGAATAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: lysA
Ortholog function: Diaminopimelate decarboxylase (EC 4.1.1.20)
Citrobacter koseri ATCC BAA-895 CKO_04214 -95 4.8 TATATCATTTTTGCATAG
Edwardsiella tarda EIB202 ETAE_2911 -73 5.5 CATATCATAAATGAATAG
Enterobacter sp. 638 Ent638_3284 -96 5 CATATCATTTTTGCATAG
Erwinia amylovora ATCC 49946 EAM_2771 -94 4.6 CATATCATGGATGAATAG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3652 -107 5 CATATCAGAAATGAATAA
Escherichia coli str. K-12 substr. MG1655 b2838 -95 5 CATATCATTTTTGCATAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03252 -109 5 CATATCATTTTTGCATAG
Photorhabdus luminescens subsp. laumondii TTO1 plu1191 -84 4.7 TATATCACAGATGAATAG
Proteus mirabilis HI4320 PMI0347 -98 4.8 TATATCACAAGTGAATAG
Salmonella typhimurium LT2 STM3013 -94 5 CATATCATTTTTGCATAG
Serratia proteamaculans 568 Spro_3836 -107 5.5 CATATCATAAATGAATAG
Yersinia pestis KIM y3184 -177 5.5 CATATCATAAATGAATAG
Position: -46
Score: 5.3
Sequence: CTATTCATTTCTGATATG
Locus tag: PC1_3487
PC1_3487 -46 5.3 CTATTCATTTCTGATATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: lysR
Ortholog function: Transcriptional activator protein LysR
Citrobacter koseri ATCC BAA-895 CKO_04215 -47 4.8 CTATGCAAAAATGATATA
Edwardsiella tarda EIB202 ETAE_2912 -15 5.5 CTATTCATTTATGATATG
Enterobacter sp. 638 Ent638_3285 -43 5 CTATGCAAAAATGATATG
Erwinia amylovora ATCC 49946 EAM_2772 -50 4.6 CTATTCATCCATGATATG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3653 -46 5 TTATTCATTTCTGATATG
Escherichia coli str. K-12 substr. MG1655 b2839 -44 5 CTATGCAAAAATGATATG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03253 -45 5 CTATGCAAAAATGATATG
Photorhabdus luminescens subsp. laumondii TTO1 plu1190 -47 4.7 CTATTCATCTGTGATATA
Proteus mirabilis HI4320 PMI0346 -29 4.8 CTATTCACTTGTGATATA
Salmonella typhimurium LT2 STM3014 -41 5 CTATGCAAAAATGATATG
Serratia proteamaculans 568 Spro_3837 -43 5.5 CTATTCATTTATGATATG
Yersinia pestis KIM y3185 -55 5.5 CTATTCATTTATGATATG
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