Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog LysR - Enterobacteriales

Properties
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode:
Biological process: Lysine biosynthesis
Effector: LL-2,6-Diaminopimelate
Phylum: Gammaproteobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 24 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Citrobacter koseri ATCC BAA-895 2 2
Edwardsiella tarda EIB202 2 2
Enterobacter sp. 638 2 2
Erwinia amylovora ATCC 49946 2 2
Erwinia carotovora subsp. atroseptica SCRI1043 2 2
Escherichia coli str. K-12 substr. MG1655 2 2
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 2 2
Photorhabdus luminescens subsp. laumondii TTO1 2 2
Proteus mirabilis HI4320 2 2
Salmonella typhimurium LT2 2 2
Serratia proteamaculans 568 2 2
Yersinia pestis KIM 2 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
lysR
*
Citrobacter koseri ATCC BAA-895

Site:
position = -47
score = 4.7573
sequence = CTATGCAAAAATGATATA

Gene: CKO_04215: Transcriptional activator protein LysR
*
Edwardsiella tarda EIB202

Site:
position = -15
score = 5.49494
sequence = CTATTCATTTATGATATG

Gene: ETAE_2912: Transcriptional activator protein LysR
*
Enterobacter sp. 638

Site:
position = -43
score = 5.03714
sequence = CTATGCAAAAATGATATG

Gene: Ent638_3285: Transcriptional activator protein LysR
*
Erwinia amylovora ATCC 49946

Site:
position = -50
score = 4.60438
sequence = CTATTCATCCATGATATG

Gene: EAM_2772: Transcriptional activator protein LysR
*
Erwinia carotovora subsp. atroseptica SCRI1043

Site:
position = -46
score = 4.97826
sequence = TTATTCATTTCTGATATG

Gene: ECA3653: Transcriptional activator protein LysR
*
Escherichia coli str. K-12 substr. MG1655

Site:
position = -44
score = 5.03714
sequence = CTATGCAAAAATGATATG

Gene: b2839: Transcriptional activator protein LysR
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578

Site:
position = -45
score = 5.03714
sequence = CTATGCAAAAATGATATG

Gene: KPN_03253: Transcriptional activator protein LysR
*
Photorhabdus luminescens subsp. laumondii TTO1

Site:
position = -47
score = 4.65061
sequence = CTATTCATCTGTGATATA

Gene: plu1190: Transcriptional activator protein LysR
*
Proteus mirabilis HI4320

Site:
position = -29
score = 4.80418
sequence = CTATTCACTTGTGATATA

Gene: PMI0346: Transcriptional activator protein LysR
*
Salmonella typhimurium LT2

Site:
position = -41
score = 5.03714
sequence = CTATGCAAAAATGATATG

Gene: STM3014: Transcriptional activator protein LysR
*
Serratia proteamaculans 568

Site:
position = -43
score = 5.49494
sequence = CTATTCATTTATGATATG

Gene: Spro_3837: Transcriptional activator protein LysR
*
Yersinia pestis KIM

Site:
position = -55
score = 5.49494
sequence = CTATTCATTTATGATATG

Gene: y3185: Transcriptional activator protein LysR
Transcriptional activator protein LysR
 
CRON 2.
lysA
*
Citrobacter koseri ATCC BAA-895

Site:
position = -95
score = 4.7573
sequence = TATATCATTTTTGCATAG

Gene: CKO_04214: Diaminopimelate decarboxylase (EC 4.1.1.20)
*
Edwardsiella tarda EIB202

Site:
position = -73
score = 5.49494
sequence = CATATCATAAATGAATAG

Gene: ETAE_2911: Diaminopimelate decarboxylase (EC 4.1.1.20)
*
Enterobacter sp. 638

Site:
position = -96
score = 5.03714
sequence = CATATCATTTTTGCATAG

Gene: Ent638_3284: Diaminopimelate decarboxylase (EC 4.1.1.20)
*
Erwinia amylovora ATCC 49946

Site:
position = -94
score = 4.60438
sequence = CATATCATGGATGAATAG

Gene: EAM_2771: Diaminopimelate decarboxylase (EC 4.1.1.20)
*
Erwinia carotovora subsp. atroseptica SCRI1043

Site:
position = -107
score = 4.97826
sequence = CATATCAGAAATGAATAA

Gene: ECA3652: Diaminopimelate decarboxylase (EC 4.1.1.20)
*
Escherichia coli str. K-12 substr. MG1655

Site:
position = -95
score = 5.03714
sequence = CATATCATTTTTGCATAG

Gene: b2838: Diaminopimelate decarboxylase (EC 4.1.1.20)
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578

Site:
position = -109
score = 5.03714
sequence = CATATCATTTTTGCATAG

Gene: KPN_03252: Diaminopimelate decarboxylase (EC 4.1.1.20)
*
Photorhabdus luminescens subsp. laumondii TTO1

Site:
position = -84
score = 4.65061
sequence = TATATCACAGATGAATAG

Gene: plu1191: Diaminopimelate decarboxylase (EC 4.1.1.20)
*
Proteus mirabilis HI4320

Site:
position = -98
score = 4.80418
sequence = TATATCACAAGTGAATAG

Gene: PMI0347: Diaminopimelate decarboxylase (EC 4.1.1.20)
*
Salmonella typhimurium LT2

Site:
position = -94
score = 5.03714
sequence = CATATCATTTTTGCATAG

Gene: STM3013: Diaminopimelate decarboxylase (EC 4.1.1.20)
*
Serratia proteamaculans 568

Site:
position = -107
score = 5.49494
sequence = CATATCATAAATGAATAG

Gene: Spro_3836: Diaminopimelate decarboxylase (EC 4.1.1.20)
*
Yersinia pestis KIM

Site:
position = -177
score = 5.49494
sequence = CATATCATAAATGAATAG

Gene: y3184: Diaminopimelate decarboxylase (EC 4.1.1.20)
Diaminopimelate decarboxylase (EC 4.1.1.20)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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