Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagated regulons of Bacillus pseudofirmus OF4

Type Regulator Effector Pathway Genes Sites
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 4 10
TF ArsR Arsenite; Cadmium, ion (Cd2+); Silver ion, (Ag+) Arsenic resistance 1 1
TF BglZ Beta-glucoside Beta-glucosides utilization 1 1
TF BirA Biotin Biotin biosynthesis 4 5
TF BkdR Branched-chain amino acid degradation 1 1
TF BltR Multidrug resistance 1 1
TF CcpA HPr, phosphocarrier protein Carbon catabolism 28 33
TF CcpN Gluconeogenesis 2 3
TF CggR Fructose-1,6-diphosphate Glycolysis 1 1
TF CitT Citrate Citrate utilization 1 3
TF CodY Guanosine triphosphate; Branched-chain amino acids Amino acid metabolism 49 82
TF CsoR Copper ion, (Cu+) Copper resistance 3 3
TF CtsR Heat shock Heat shock response 2 4
TF CymR O-acetyl-L-serine; CysK, cysteine synthetase Cysteine metabolism 4 4
TF CysL Sulfate; Sulfite; Thiosulfate Sulfite reduction 1 3
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 3 4
TF FapR Malonyl-CoA Fatty acid biosynthesis 3 5
TF Fnr Oxygen Anaerobic metabolism 1 1
TF Fur Iron ion, (Fe2+) Iron homeostasis 10 26
TF GlnR Feedback-inhibited GlnA, glutamine synthetase Nitrogen assimilation 3 4
TF GltC2 Glutamate; 2-oxoglutarate; RocG, glutamate dehydrogenase Glutamate metabolism 2 2
TF HisR Histidine Histidine biosynthesis 2 2
TF HrcA Heat shock Heat shock response 2 2
TF LexA DNA damage SOS response 11 15
TF LiaR LiaS, sensor histidine kinase (bacitracin, nisin, ramoplanin, vancomycin) Cell wall-active antibiotics stress response 1 1
TF LutR L-lactate Lactate utilization 1 1
TF MhqR 2-Methylhydroquinone and catechol resistance 1 3
TF MntR Manganese ion, (Mn2+) Manganese homeostasis 3 4
TF MtlR MtlA, mannitol-specific enzyme IICB PTS component; HPr, phosphocarrier protein Mannitol utilization 1 1
TF NagR N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 2 2
TF NiaR Niacin NAD biosynthesis 4 4
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 1 2
TF PerR Hydrogen peroxide; Manganese ion, (Mn2+); Iron ion, (Fe2+) Oxidative stress response; Peroxide stress response 5 9
TF PurR 5-phosphoribosyl 1-pyrophosphate Purine metabolism 5 5
TF Rex NADH Energy metabolism 3 3
TF RocR Ornithine; L-citrulline Arginine degradation; Ornithine degradation 5 6
TF TnrA NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase Nitrogen assimilation 27 43
TF TreR Trehalose-6-phosphate Trehalose utilization 2 3
TF YhcF Multidrug resistance; Multidrug efflux 1 1
TF YhgD 1 1
TF YodB/CatR Diamide; Quinone Oxidative stress response 1 2
TF YrkD Multidrug resistance 5 9
TF YtrA Ramoplanin Ramoplanin resistance 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 4 7
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