Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of CymR regulog to Bacillus pseudofirmus OF4

Reference regulog properties
Source regulog: CymR - Bacillales
Regulator type: Transcription factor
Regulator family: Rrf2
Regulation mode: repressor
Biological process: Cysteine metabolism
Effector: O-acetyl-L-serine; CysK, cysteine synthetase
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus pseudofirmus OF4
Orthologous TF(s) BpOF4_11820
Regulated genes 4
Built upon 65 sites [see more]
Predicted regulatory interactions in Bacillus pseudofirmus OF4
Locus tag Position Score Sequence
Position: -40
Score: 5.3
Sequence: CAAAACCTATGAAATTACTTGGGATTA
Locus tag: BpOF4_08340
BpOF4_08340 -40 5.3 CAAAACCTATGAAATTACTTGGGATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cysK
Ortholog function: Cysteine synthase (EC 2.5.1.47)
Bacillus subtilis subsp. subtilis str. 168 BSU00730 -39 5.4 TAATACCAATACAAATAGTCGGAAATT
Bacillus amyloliquefaciens FZB42 RBAM_000840 -39 5.8 TAATACCAATAAATTTAGTCGGAAATT
Bacillus pumilus SAFR-032 BPUM_0057 -40 4.6 TtAaTaCaATaAAATTAcTcGGAgaTA
Bacillus licheniformis DSM 13 BLi00089 -38 5.6 TAATCCCAATAAAATTACTCGGAAATT
Anoxybacillus flavithermus WK1 Aflv_0065 -30 5 CAAATTCTATAAAAATACTCGGGATTA
Geobacillus kaustophilus HTA426 GK0065 -38 4.7 CAAAGTCGATAAAATTAATGGGGATTA
Bacillus cereus ATCC 14579 BC0075 -39 5.3 TAAAACCAATAAAAATACTCGGTGTTA
Bacillus halodurans C-125 BH0088 -39 5.2 GAAAACCAATAAATTTACTTGGGATTA
Bacillus clausii KSM-K16 ABC0109 -42 4.9 TAAAACCAATGAAGATACTAGGGATTG
Oceanobacillus iheyensis HTE831 OB0084 -41 6 TAAATCTTATAAAAATACTTGGAATTA
Paenibacillus sp. JDR-2 Pjdr2_0074 -44 5.7 AAAAACCAACTAAATTAGTCGGAATAA
Position: -58
Score: 5.6
Sequence: TAAAACTTATAAATTAACTCGGAATAA
Locus tag: BpOF4_14415
BpOF4_14415 -58 5.6 TAAAACTTATAAATTAACTCGGAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ABC0615
Ortholog function: uroporphyrin-III C-methyltransferase
Bacillus clausii KSM-K16 ABC0615 -265 4.9 AAATACCGAGTTTGTTAATCAGGATAA
Position: -145
Score: 6
Sequence: TAAATCATACTTGACTTATAGGATTTA
Locus tag: BpOF4_16930
BpOF4_16930 -145 6 TAAATCATACTTGACTTATAGGATTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cysJ
Ortholog function: Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2)
Bacillus licheniformis DSM 13 BLi01302 -105 5.5 TAAAACCGATTTGATTTATAGGAATAG
Anoxybacillus flavithermus WK1 Aflv_1597 -48 5.4 TAAAACATACTTGATTTATAGGAATAG
Bacillus halodurans C-125 BH0609 -87 5.7 TAAAACCAATTTGACTTATCGGAATAA
Bacillus clausii KSM-K16 ABC0618 -265 4.9 AAATACCGAGTTTGTTAATCAGGATAA
Oceanobacillus iheyensis HTE831 OB1653 -98 5.4 CAATTCACATTGTATTACTATGAATTA
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