Propagation of TnrA regulog to Bacillus pseudofirmus OF4

Reference regulog properties
Source regulog:	TnrA - Bacillales
Regulator type:	Transcription factor
Regulator family:	MerR
Regulation mode:	repressor (activator)
Biological process:	Nitrogen assimilation
Effector:	NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase
Phylum:	Firmicutes
Propagated regulon:
Target genome	Bacillus pseudofirmus OF4
Orthologous TF(s)	BpOF4_14410
Regulated genes	27

Built upon 304 sites [see more]

Predicted regulatory interactions in *Bacillus pseudofirmus OF4*
	Locus tag	Position	Score	Sequence
Position: -128 Score: 4.8 Sequence: TGTTAGTTGATCTGACA Locus tag: BpOF4_05475
	BpOF4_05475	-128	4.8	TGTTAGTTGATCTGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nasB
Ortholog function: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
Bacillus subtilis subsp. subtilis str. 168	BSU03320	-98	4.9	TGTAAGTTTTTGTGACA
Bacillus amyloliquefaciens FZB42	RBAM_003530	-100	4.8	TGTAAGATAATGCGACA
Bacillus licheniformis DSM 13	BLi00482	-87	5	TGTCAGGAAATGTAACA
Bacillus clausii KSM-K16	ABC1623	-89	5.2	TGTCACAAAATATTACA
Paenibacillus sp. JDR-2	Pjdr2_2175	-223	4	TGTCAATAAACTTAACA
		-159	4	TGTGACCTATATTGACA

Position: -78 Score: 5.2 Sequence: TGTCAGATAACATAACA Locus tag: BpOF4_05585
	BpOF4_05585	-78	5.2	TGTCAGATAACATAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nasF
Ortholog function: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)
Bacillus clausii KSM-K16	ABC1620	-89	5.2	TGTCACAAAATATTACA

Position: -308 Score: 5.1 Sequence: TGTAAGAATTTATCACA Locus tag: BpOF4_05740
	BpOF4_05740	-308	5.1	TGTAAGAATTTATCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: appD
Ortholog function: Oligopeptide ABC transporter (ATP-binding protein)
Bacillus subtilis subsp. subtilis str. 168	BSU11360	-119	4.1	TGTAATAATATACAACT
Bacillus amyloliquefaciens FZB42	RBAM_011360	-101	4.1	TGTAATAATATACAACT
Bacillus clausii KSM-K16	ABC2416	-111	4.2	TGTGAGAAAATCTATTA
Oceanobacillus iheyensis HTE831	OB2264	-146	4.4	TGTCGAATTTTGTAACA

Position: -199 Score: 4.8 Sequence: TGTCAATTTATATGACA Locus tag: BpOF4_06660
	BpOF4_06660	-199	4.8	TGTCAATTTATATGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: capB
Ortholog function: Poly-gamma-glutamate synthase subunit (EC 6.3.2.-)
Bacillus subtilis subsp. subtilis str. 168	BSU35900	-98	4.4	GGGAAGATTATGTTACA
Bacillus pumilus SAFR-032	BPUM_3259	-106	4.9	TGAAAGATTATGTTACA

Position: -147 Score: 3.9 Sequence: TGTCAGTTTATCTGATT Locus tag: BpOF4_07255
	BpOF4_07255	-147	3.9	TGTCAGTTTATCTGATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywdK
Ortholog function: Uncharacterized small membrane protein
Bacillus subtilis subsp. subtilis str. 168	BSU37930	-53	5.1	TGTCAGAAAAAATAACA
Bacillus amyloliquefaciens FZB42	RBAM_035180	-92	4.7	CGTCAGAAAAAATAACA
Paenibacillus sp. JDR-2	Pjdr2_4626	-39	3.9	TGTAAGATTATACACAA

Position: -125 Score: 5.2 Sequence: TGTCAGCTTATCTTACA Locus tag: BpOF4_07290
	BpOF4_07290	-125	5.2	TGTCAGCTTATCTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrgA
Ortholog function: Ammonium transporter
Anoxybacillus flavithermus WK1	Aflv_1332	-112	4.6	TGTCATGAAAAATAACA
		-49	4.8	TGTAATATATTATAACC
		-27	5	TGTTATAAAAAATGACA
Geobacillus kaustophilus HTA426	GK1452	-124	4.4	TGTTAAGAAATTTAACA
		-48	5.4	TGTTATATATTATGACA
Bacillus halodurans C-125	BH3834	-138	4	TGTCAGATATAGGCACA
		-113	4.9	TGTCTGATTATCTGACA
		-41	4.3	TATTAGAAAAACTTACA
Bacillus clausii KSM-K16	ABC3928	-84	5.2	TGTTAGATATCCTGACA
Paenibacillus sp. JDR-2	Pjdr2_2141	-159	4.2	TGTGAAAAAACTTAACA
		-34	4.5	TGTTAGTAAACATCACA

Position: -99 Score: 5.7 Sequence: TGTTAGATAATCTAACA Locus tag: BpOF4_07380
	BpOF4_07380	-99	5.7	TGTTAGATAATCTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA2
Ortholog function: Glutamine synthetase type I (EC 6.3.1.2)
Anoxybacillus flavithermus WK1	Aflv_1403	-16	4.9	TGTGAGGTAATGTAACA
Geobacillus kaustophilus HTA426	GK1637	-16	4.9	TGTGAGGTAATGTGACA
Bacillus halodurans C-125	BH3867	-103	5.7	TGTCAGATAATCTAACA
		-33	4.9	TGTCACATTACATTACA
Bacillus clausii KSM-K16	ABC3940	-103	5.7	TGTCAGATAATCTGACA

Position: -100 Score: 5.5 Sequence: TGTTAGATTATGTGACA Locus tag: BpOF4_09390
	BpOF4_09390	-100	5.5	TGTTAGATTATGTGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ureA
Ortholog function: Urease gamma subunit (EC 3.5.1.5)
Bacillus subtilis subsp. subtilis str. 168	BSU36660	-938	4.5	TGTGAATAAATATAACA
		-833	4.6	TGTAAACTTTTATAACA
Bacillus amyloliquefaciens FZB42	RBAM_033830	-308	4.2	TGTTATGAGAAATGACA
		-203	3.9	TGTAACCTTTCTTCACA
Bacillus halodurans C-125	BH0252	-165	4.4	CGTTAGAAATCGTTACA
		-96	5	TGTAATCTTTTCTAACA
		-61	4.5	TGTCATCAAAGATAACA

Position: -124 Score: 5.7 Sequence: TGTCAGATAATCTAACA Position: -82 Score: 4.6 Sequence: TGTGATATAGTATGACA Locus tag: BpOF4_14410
	BpOF4_14410	-124	5.7	TGTCAGATAATCTAACA
		-82	4.6	TGTGATATAGTATGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: tnrA
Ortholog function: Transcriptional regulator of nitrogen assimilation, MerR family
Bacillus subtilis subsp. subtilis str. 168	BSU13310	-124	3.9	TGTTAATTTTTCTTCCG
		-81	5.5	TGTTAGAAAATATGACA
Bacillus amyloliquefaciens FZB42	RBAM_013130	-124	4.1	TGTCAATTTTTCTGCCG
		-81	4.8	CGTCAGAAAACCTGACA
Bacillus pumilus SAFR-032	BPUM_1230	-121	4	TGTCAACTTTCCTTCCA
		-80	5.5	TGTTATATTTTCTAACA
Bacillus licheniformis DSM 13	BLi01490	-124	3.8	TGTAAACTTTTCTTCCG
		-81	5.6	TGTTAGATTTTCTGACA
Anoxybacillus flavithermus WK1	Aflv_1544	-113	4.9	TGTTACTTTTTATAACA
		-82	4.9	TGTTACTTTTTATAACA
		-27	5.4	TGTTATAAAATATGACA
Geobacillus kaustophilus HTA426	GK1860	-86	3.9	TGTTAATTTTATTTACA
		-33	4.6	CGTTAGAAAATATAACG
Bacillus halodurans C-125	BH1494	-110	5.5	TGTAAGAAAATCTAACA
Bacillus clausii KSM-K16	ABC1760	-99	5.5	TGTTAGATTTTCTTACA
		-57	5	TGTGATATATTGTTACA
Oceanobacillus iheyensis HTE831	OB1650	-80	5.1	TGTTAGAAATACTAACA
		-57	4.3	TGACATATAAGCTGACG
Paenibacillus sp. JDR-2	Pjdr2_5154	-302	5.7	TGTTAGATAATCTAACA
		-41	5	TGTTAGAAAACATTACA

Position: -142 Score: 5.7 Sequence: TGTTAGATTATCTGACA Locus tag: BpOF4_14415
	BpOF4_14415	-142	5.7	TGTTAGATTATCTGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nasF
Ortholog function: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)
Bacillus subtilis subsp. subtilis str. 168	BSU03280	-95	4.1	TCGTATATTTTGTTACA
		-85	5.3	TGTTACATTTTATAACA
Bacillus amyloliquefaciens FZB42	RBAM_003490	-84	4.9	TGTTACATTTCATAACA
Bacillus licheniformis DSM 13	BLi00486	-87	5	TGTCAGGAAATGTAACA

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of TnrA regulog to Bacillus pseudofirmus OF4

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --