Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CcpA regulog to Bacillus pseudofirmus OF4

Reference regulog properties
Source regulog: CcpA - Bacillales
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode:
Biological process: Carbon catabolism
Effector: HPr, phosphocarrier protein
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus pseudofirmus OF4
Orthologous TF(s) BpOF4_03825
Regulated genes 28
Built upon 559 sites [see more]
Predicted regulatory interactions in Bacillus pseudofirmus OF4
Locus tag Position Score Sequence
Position: -135
Score: 4.1
Sequence: TTGAAAGAGGTTACAC
Locus tag: BpOF4_00255
BpOF4_00255 -135 4.1 TTGAAAGAGGTTACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: sucC
Ortholog function: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Bacillus amyloliquefaciens FZB42 RBAM_015920 -52 4.8 ATGAAAGCGCAGTCTA
Bacillus licheniformis DSM 13 BLi01829 -53 4.8 ATGAAAGCGCAGTCTA
Bacillus pumilus SAFR-032 BPUM_1507 -57 4.8 ATGAAAGCGCAGTCTA
Bacillus subtilis subsp. subtilis str. 168 BSU16090 -51 4.8 ATGAAAGCGCAGTCTA
Geobacillus kaustophilus HTA426 GK1208 -47 4.2 ATGAAAGCGCTAAGAC
Position: -132
Score: 4.9
Sequence: ATGTAAGCGTTATAAA
Locus tag: BpOF4_00740
BpOF4_00740 -132 4.9 ATGTAAGCGTTATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: apbA
Ortholog function: 2-dehydropantoate 2-reductase (EC 1.1.1.169)
Bacillus amyloliquefaciens FZB42 RBAM_014970 -132 4.9 TTGTAAACGCTTTAAT
Bacillus clausii KSM-K16 ABC2368 -98 4.8 ATGAAAACGCATTAAA
Bacillus licheniformis DSM 13 BLi01728 -150 4.6 TTGTAAACGCTTTTTT
Bacillus pumilus SAFR-032 BPUM_1404 -166 4.8 TTGAAGGCGTTTTCAT
Bacillus subtilis subsp. subtilis str. 168 BSU15110 -127 4.7 TTGTAAACGCTTTATT
Position: -224
Score: 4.7
Sequence: GTGTAAGCGTATACAA
Locus tag: BpOF4_03040
BpOF4_03040 -224 4.7 GTGTAAGCGTATACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dat
Ortholog function: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Anoxybacillus flavithermus WK1 Aflv_0590 -170 4.8 ATGTAAGCGGATACAT
Bacillus cereus ATCC 14579 BC1396 -153 5 TTGTAAACGTTAACAA
Bacillus licheniformis DSM 13 BLi02962 -225 5 ATGTAAGCGTATACAA
Bacillus pumilus SAFR-032 BPUM_2473 -200 4.6 GTGTAAGCGTATACAT
Geobacillus kaustophilus HTA426 GK2662 -165 5.1 ATGTAAGCGCATTCAA
Position: -214
Score: 4.3
Sequence: TTGTATACGTTTTCTT
Locus tag: BpOF4_03120
BpOF4_03120 -214 4.3 TTGTATACGTTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b558 subunit
Bacillus amyloliquefaciens FZB42 RBAM_025520 -143 4.3 ATGTACACGTTTTCTT
Bacillus cereus ATCC 14579 BC4518 -178 4.3 ATGTATACGTTTTCTT
Bacillus clausii KSM-K16 ABC2664 -190 4.3 TTGAATCCGTTTTCTT
Bacillus licheniformis DSM 13 BLi02994 -143 4.4 ATGTACGCGTTTTCTT
Bacillus pumilus SAFR-032 BPUM_2503 -139 4.2 ATGTACGCGGTTTCTT
Bacillus subtilis subsp. subtilis str. 168 BSU28450 -139 4.4 ATGTACGCGTTTTCTT
Position: -165
Score: 4.6
Sequence: ATTTAAGCGGTTTCAA
Locus tag: BpOF4_03500
BpOF4_03500 -165 4.6 ATTTAAGCGGTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ackA
Ortholog function: Acetate kinase (EC 2.7.2.1)
Anoxybacillus flavithermus WK1 Aflv_0480 -133 4.4 AAGAAAACGTTTTCGT
Bacillus amyloliquefaciens FZB42 RBAM_026400 -146 4.7 TTGTAAGCGGTACCAA
Bacillus licheniformis DSM 13 BLi03086 -168 4.9 GTGAAAGCGTTAACAT
Bacillus pumilus SAFR-032 BPUM_2579 -180 4.7 ATGTAAGCGGTAACAG
Bacillus subtilis subsp. subtilis str. 168 BSU29470 -156 5.2 TTGTAAGCGTTATCAA
Position: -176
Score: 4.8
Sequence: ATGATAACGTTATCAA
Locus tag: BpOF4_03790
BpOF4_03790 -176 4.8 ATGATAACGTTATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: acsA
Ortholog function: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
Anoxybacillus flavithermus WK1 Aflv_0462 237 4.9 ATGAAAGAGTTTTCAA
Bacillus amyloliquefaciens FZB42 RBAM_026800 -102 4.5 TATAAAGCGTTTTCAA
Bacillus clausii KSM-K16 ABC2760 -65 4.7 TTGAAAACGTTACCTT
0 4.8 ATGAAAGCGCTTCCTG
Bacillus halodurans C-125 BH3234 6 4.4 TTGCAAGCGCTTCCAG
Bacillus licheniformis DSM 13 BLi03119 6 4.7 TTGAAAGCGCTGCCAG
Bacillus pumilus SAFR-032 BPUM_2616 -30 4.7 TTGTAAACGTATGCAA
Bacillus subtilis subsp. subtilis str. 168 BSU29680 -101 4.5 TATAAAGCGTTTTCAA
6 4.8 TTGAAAGCGTTACCAG
Oceanobacillus iheyensis HTE831 OB0022 -36 4.5 TTGTAATCGTTTGCAA
Paenibacillus sp. JDR-2 Pjdr2_3796 -56 5 TTGAAAGCGTATTCTT
Position: -61
Score: 4.7
Sequence: TTGATAACGTTATCAT
Locus tag: BpOF4_03795
BpOF4_03795 -61 4.7 TTGATAACGTTATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acuA
Ortholog function: Acetyltransferase AcuA, acetyl-CoA synthetase inhibitor
Anoxybacillus flavithermus WK1 Aflv_0461 -70 4.7 ATGAAAACGATTTAAT
Bacillus amyloliquefaciens FZB42 RBAM_026810 -72 4.9 TTGAAAACGCTTTATA
Bacillus licheniformis DSM 13 BLi03120 -69 4.9 ATGAAAACGCTTAATA
Bacillus pumilus SAFR-032 BPUM_2617 -74 4.4 GTGAAACCGTTTTAAT
Bacillus subtilis subsp. subtilis str. 168 BSU29690 -75 4.9 TTGAAAACGCTTTATA
Position: -58
Score: 4.1
Sequence: ATGAGAGCGCTTTACT
Locus tag: BpOF4_05150
BpOF4_05150 -58 4.1 ATGAGAGCGCTTTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtlA
Ortholog function: PTS family mannitol-permease II, BC component
Anoxybacillus flavithermus WK1 Aflv_1566 -58 4.5 CTGTAAGCGCTTTAAT
Bacillus amyloliquefaciens FZB42 RBAM_004230 -96 4.6 TTGTAAGCGTTTTATG
Bacillus halodurans C-125 BH3854 -39 4.3 ATGAGAGCGCTTTATT
Bacillus licheniformis DSM 13 BLi00505 -94 4.4 CTGTAAGCGTTTTAAT
Bacillus pumilus SAFR-032 BPUM_0369 -106 4.1 GTGAAAGCGTTTTACG
Bacillus subtilis subsp. subtilis str. 168 BSU03981 -95 4 CTGTAAGCGTTTTAAC
Geobacillus kaustophilus HTA426 GK1948 -54 4.8 TTGTAAGCGTTTTAAG
Oceanobacillus iheyensis HTE831 OB2603 -75 4.4 TTGTAAGCGGATTCCT
Paenibacillus sp. JDR-2 Pjdr2_6226 -33 4.1 AAGAAAGCGATTTTAT
Position: -76
Score: 4.9
Sequence: TAGTAAGCGCTTACAA
Locus tag: BpOF4_05305
BpOF4_05305 -76 4.9 TAGTAAGCGCTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sigL
Ortholog function: DNA-directed RNA polymerase sigma subunit SigL
Anoxybacillus flavithermus WK1 Aflv_2521 211 4.9 ATGTAAGCGTTTTTAA
Bacillus amyloliquefaciens FZB42 RBAM_031510 567 4.5 TGGAAAGCGCTTACAC
Bacillus cereus ATCC 14579 BC5143 488 4.6 ATTGAAGCGCTTACAA
Bacillus clausii KSM-K16 ABC3025 544 4.1 TTGACATCGTTTTAAA
Bacillus halodurans C-125 BH3563 -71 4.4 TCGTAAGCGCTTACAG
Bacillus licheniformis DSM 13 BLi03678 250 4.4 TTAAAAGCGCTTTGAA
Bacillus pumilus SAFR-032 BPUM_3063 951 4.7 ATGAAACCGCTTACGA
Bacillus subtilis subsp. subtilis str. 168 BSU34200 564 4.6 TGGAAAACGCTTTCAG
Geobacillus kaustophilus HTA426 GK3061 96 4.7 TTGGAAGCGTTTTTAT
Position: -34
Score: 4.5
Sequence: AAGAAATCGCTTTCAA
Locus tag: BpOF4_05525
BpOF4_05525 -34 4.5 AAGAAATCGCTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdcS
Ortholog function: Sodium:dicarboxylate cotransporter; di- and tricarboxylate transporters
Bacillus clausii KSM-K16 ABC3994 -32 4.7 AAGAAAACGCTTTCAG
Bacillus licheniformis DSM 13 BLi00488 -41 4.9 TTGTAAGCGCTTTATA
Oceanobacillus iheyensis HTE831 OB2540 -82 4.5 ATGTAAACGCAACCAA
Position: -31
Score: 4.2
Sequence: AAGTAACCGGTTACAT
Locus tag: BpOF4_06355
BpOF4_06355 -31 4.2 AAGTAACCGGTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsR
Ortholog function: Ribose operon repressor, LacI family
Anoxybacillus flavithermus WK1 Aflv_2673 -34 4.5 ATGTAACCGGTTACAG
Bacillus clausii KSM-K16 ABC3549 -33 4.1 CTGTAACCGGTTACAT
Position: -256
Score: 4.4
Sequence: AAGGAAGCGTTTACTT
Locus tag: BpOF4_07010
BpOF4_07010 -256 4.4 AAGGAAGCGTTTACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: iolJ
Ortholog function: Fructose-bisphosphate aldolase class II (EC 4.1.2.13)
Bacillus cereus ATCC 14579 BC5335 -184 4.5 AAAAAAGCGTTTACAT
Paenibacillus sp. JDR-2 Pjdr2_6054 -236 4.5 ATTATAGCGCTTACAA
Position: -94
Score: 4.7
Sequence: TTGAAAGCGCAATCAC
Locus tag: BpOF4_07060
BpOF4_07060 -94 4.7 TTGAAAGCGCAATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: mmgA
Ortholog function: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Anoxybacillus flavithermus WK1 Aflv_2739 -16 4.7 TTGAAAGGGCTTTCTT
Bacillus amyloliquefaciens FZB42 RBAM_022450 -43 4.6 GTGTAAGCGTTATCTT
Bacillus halodurans C-125 BH3801 -65 5 ATGTAAGCGCTTAAAT
Bacillus pumilus SAFR-032 BPUM_3373 -32 4.9 ATGTAAGCGGTAACAA
Bacillus subtilis subsp. subtilis str. 168 BSU24170 -37 4.9 TTGTAAGCGCTGTCTA
Geobacillus kaustophilus HTA426 GK3397 -40 4.6 TTGTAATCGCTTTCTT
Position: -195
Score: 4.4
Sequence: ATGTAAGCGAAAACAT
Locus tag: BpOF4_07340
BpOF4_07340 -195 4.4 ATGTAAGCGAAAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sacP
Ortholog function: PTS sucrose-specific enzyme IIBC component
Anoxybacillus flavithermus WK1 Aflv_2785 -147 4.7 ATGAAAGCGGATAAAA
Bacillus amyloliquefaciens FZB42 RBAM_035290 -175 4.7 ACGAAAGCGCTATCAT
-151 5 ATGAAAGCGCATTAAA
Bacillus cereus ATCC 14579 BC0775 -158 4.7 AAGAAAGCGTTGACAA
Bacillus halodurans C-125 BH1856 -170 4.3 GAGAAAGCGTTGACAA
Bacillus licheniformis DSM 13 BLi04017 -154 4.9 ATGAAAGCGTATTAAA
Bacillus pumilus SAFR-032 BPUM_3452 -145 5.1 ATGAAAGCGTAATCAA
Bacillus subtilis subsp. subtilis str. 168 BSU38050 -151 5 ATGAAAGCGTATTCTT
Position: -75
Score: 3.9
Sequence: GTGTAAACGGATTCAC
Locus tag: BpOF4_08765
BpOF4_08765 -75 3.9 GTGTAAACGGATTCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: mrp
Ortholog function: Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like
Anoxybacillus flavithermus WK1 Aflv_0142 -34 4 GTGAAACCGAATACAT
Bacillus amyloliquefaciens FZB42 RBAM_001800 -32 4.1 TTGTAAACGAATACAC
Bacillus cereus ATCC 14579 BC0168 -84 4.5 ATGTAAACGCATTTAT
Bacillus licheniformis DSM 13 BLi00172 -31 4.5 TTGTAAACGAATACAA
Bacillus pumilus SAFR-032 BPUM_0145 -35 4.6 TTGTAAACGAATTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU01540 -32 4.1 TTGTAAACGAATACAC
Position: -55
Score: 4.5
Sequence: TTGTATACGCTTACAA
Locus tag: BpOF4_09395
BpOF4_09395 -55 4.5 TTGTATACGCTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: citMII
Ortholog function: Magnesium citrate secondary transporter
Bacillus clausii KSM-K16 ABC0100 -76 4.8 TTGGAAACGGTTACAA
Bacillus halodurans C-125 BH0745 -56 5 TTGAAAGCGCTTAATA
Bacillus pumilus SAFR-032 BPUM_3618 -120 4.6 ATGAAAGCGGTTGCCT
-32 4.5 ATGTAAACGGTTTATT
Position: -31
Score: 4.9
Sequence: ATGAAAGCGTTATCTG
Locus tag: BpOF4_09785
BpOF4_09785 -31 4.9 ATGAAAGCGTTATCTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: dagA
Ortholog function: Putative amino acid transporter
Bacillus halodurans C-125 BH3926 -113 4.5 AATAAAGCGCTTTCAT
Bacillus licheniformis DSM 13 BLi04274 -107 4.9 ATGTAAGCGATTACAT
-33 5.1 ATGAAAGCGTTATCTT
Position: -141
Score: 4.5
Sequence: ATGAAAACGTAATCAC
Position: -29
Score: 4.9
Sequence: ATGAAAACGTTAACAG
Locus tag: BpOF4_10345
BpOF4_10345 -141 4.5 ATGAAAACGTAATCAC
-29 4.9 ATGAAAACGTTAACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: treP
Ortholog function: PTS system, trehalose-specific enzyme II, BC component (EC 2.7.1.69)
Bacillus pumilus SAFR-032 BPUM_0728 318 4 GTGAAAACGCTTGCGG
Position: -89
Score: 4.9
Sequence: TTGAATGCGCTTTCAT
Locus tag: BpOF4_11280
BpOF4_11280 -89 4.9 TTGAATGCGCTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yngJ
Ortholog function: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Bacillus clausii KSM-K16 ABC1506 -77 4.6 TTGGTAACGCTTTCAT
Bacillus halodurans C-125 BH1130 -105 4.7 TTGGTAGCGCTTACAT
Geobacillus kaustophilus HTA426 GK1597 -103 4.9 TTGAAAACGCTTCAAA
Position: -67
Score: 5.2
Sequence: TTGTAAGCGTTATCAA
Locus tag: BpOF4_11290
BpOF4_11290 -67 5.2 TTGTAAGCGTTATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yngH
Ortholog function: Biotin carboxylase of methylcrotonyl-CoA carboxylase (EC 6.3.4.14)
Bacillus amyloliquefaciens FZB42 RBAM_018370 -44 5.2 ATGAAAACGTTTACTA
Bacillus clausii KSM-K16 ABC1507 -77 4.6 TTGGTAACGCTTTCAT
Bacillus halodurans C-125 BH1132 -251 4.6 AAGAAACCGTTTACAA
Bacillus licheniformis DSM 13 BLi02143 -35 5.3 ATGAAAACGCTTTCTA
Bacillus pumilus SAFR-032 BPUM_1784 -35 4.8 ATGTAAACGCTTACCA
Bacillus subtilis subsp. subtilis str. 168 BSU18240 -41 4.8 ATGTAAACGCTTTCCT
Position: -47
Score: 4.2
Sequence: GTGAAAGGGGTTACAA
Locus tag: BpOF4_11330
BpOF4_11330 -47 4.2 GTGAAAGGGGTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: msmX
Ortholog function: Maltose/maltodextrin transport ATP-binding protein (EC 3.6.3.19)
Anoxybacillus flavithermus WK1 Aflv_2303 -30 4.4 ATGAAATCGATTACAT
Bacillus clausii KSM-K16 ABC1514 -48 4.6 ATGAAAGGGGTTACAA
Bacillus halodurans C-125 BH1140 -47 4.6 TTGTAAGCGCTACAAT
Bacillus licheniformis DSM 13 BLi01052 -34 4.6 GTTAAAGCGCTTACAT
Bacillus pumilus SAFR-032 BPUM_0922 -41 4.1 AGTGAAGCGCTTTCAA
Oceanobacillus iheyensis HTE831 OB1134 -37 4.1 ATGTAATCGTTAACAC
Position: -71
Score: 4.9
Sequence: TTGAAAGCACTTACAT
Locus tag: BpOF4_12645
BpOF4_12645 -71 4.9 TTGAAAGCACTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lctP
Ortholog function: L-lactate permease
Bacillus clausii KSM-K16 ABC0974 -69 4.8 TTGTAAGTGCTTACAT
Bacillus halodurans C-125 BH1831 -70 4.8 TTTAAAACGCTTACAT
Position: -40
Score: 5.1
Sequence: TTGTAAGCGCTTTAAT
Locus tag: BpOF4_13415
BpOF4_13415 -40 5.1 TTGTAAGCGCTTTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mmgA
Ortholog function: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Anoxybacillus flavithermus WK1 Aflv_2739 -16 4.7 TTGAAAGGGCTTTCTT
Bacillus amyloliquefaciens FZB42 RBAM_022450 -43 4.6 GTGTAAGCGTTATCTT
Bacillus halodurans C-125 BH3801 -65 5 ATGTAAGCGCTTAAAT
Bacillus pumilus SAFR-032 BPUM_3373 -32 4.9 ATGTAAGCGGTAACAA
Bacillus subtilis subsp. subtilis str. 168 BSU24170 -37 4.9 TTGTAAGCGCTGTCTA
Geobacillus kaustophilus HTA426 GK3397 -40 4.6 TTGTAATCGCTTTCTT
Position: -79
Score: 5
Sequence: ATGAAAGCGTTATAAT
Locus tag: BpOF4_18925
BpOF4_18925 -79 5 ATGAAAGCGTTATAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: odhA
Ortholog function: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Bacillus amyloliquefaciens FZB42 RBAM_019130 -101 4.7 TTGGAAGCGTTTTTAT
Bacillus cereus ATCC 14579 BC1252 -101 4.3 AAGAAAACATTTACAT
Bacillus clausii KSM-K16 ABC2114 -63 4.8 TTGTAAGCGCTTGAAA
Bacillus halodurans C-125 BH2206 -64 5 ATGAAAGCGTTATAAA
Bacillus licheniformis DSM 13 BLi02260 -100 4.3 GTGGAAGCGTTTTTAT
Bacillus pumilus SAFR-032 BPUM_1862 -101 4.7 TTGGAAGCGTTTTATT
Bacillus subtilis subsp. subtilis str. 168 BSU19370 -101 4.7 TTGGAAGCGTTTTTAT
Geobacillus kaustophilus HTA426 GK1023 -123 4.1 GTGAAAACGTTTATAC
Oceanobacillus iheyensis HTE831 OB1089 -51 4.3 TTTGAACCGTTTTCAT
Paenibacillus sp. JDR-2 Pjdr2_4724 -242 4.4 ATGAATACGCTTTAAA
© 2009-2020 RegPrecise