Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CodY regulog to Bacillus pseudofirmus OF4

Reference regulog properties
Source regulog: CodY - Bacillales
Regulator type: Transcription factor
Regulator family: CodY
Regulation mode:
Biological process: Amino acid metabolism
Effector: Guanosine triphosphate; Branched-chain amino acids
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus pseudofirmus OF4
Orthologous TF(s) BpOF4_00215
Regulated genes 49
Built upon 445 sites [see more]
Predicted regulatory interactions in Bacillus pseudofirmus OF4
Locus tag Position Score Sequence
Position: -77
Score: 5
Sequence: AATTTACTGAAAATT
Locus tag: BpOF4_01000
BpOF4_01000 -77 5 AATTTACTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ykzI
Ortholog function: Hypothetical protein
Bacillus cereus ATCC 14579 BC3959 -74 4.6 AAAAATCAGAAAATT
Position: -117
Score: 4.8
Sequence: AATATTCAAAAAAAT
Locus tag: BpOF4_03545
BpOF4_03545 -117 4.8 AATATTCAAAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ytcI
Ortholog function: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
Bacillus halodurans C-125 BH3201 -65 4.3 AATATTCAAAATAAA
Bacillus clausii KSM-K16 ABC3255 -175 4.3 CTTTTTTAGAAAATT
Position: -62
Score: 4.5
Sequence: AATTATATAAATATT
Position: -53
Score: 4.7
Sequence: AATATTCTGATAATA
Locus tag: BpOF4_04805
BpOF4_04805 -62 4.5 AATTATATAAATATT
-53 4.7 AATATTCTGATAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yuiA
Ortholog function: Conserved hypothetical protein
Bacillus subtilis subsp. subtilis str. 168 BSU32090 -36 4.9 TATTATCAGAAAATT
Bacillus amyloliquefaciens FZB42 RBAM_029140 -34 4.9 TATTATCAGAAAATT
Geobacillus kaustophilus HTA426 GK2951 -54 4.4 TTTTTACAGAAAATT
Bacillus halodurans C-125 BH3406 -47 4.3 AAAATTCTGATAATA
Position: -249
Score: 4.5
Sequence: AATTTCCTTAAAATT
Position: -109
Score: 4.7
Sequence: AATTGTCAAATAATT
Locus tag: BpOF4_04985
BpOF4_04985 -249 4.5 AATTTCCTTAAAATT
-109 4.7 AATTGTCAAATAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: BH3439
Ortholog function: Sodium/proline symporter
Bacillus licheniformis DSM 13 BLi03425 -56 5 AATTATTAGAAAATT
Anoxybacillus flavithermus WK1 Aflv_2428 -166 4.5 ATTTTTTAAAATATT
Bacillus cereus ATCC 14579 BC4071 -70 4.5 AATTTATTGATAATT
Bacillus halodurans C-125 BH3439 -240 4.5 AATTTTCGAAAAATA
-62 5 AATTTTCTGAATATA
Bacillus clausii KSM-K16 ABC1961 -101 4.6 TTTTTTCAGAAAATA
Position: -223
Score: 4.5
Sequence: AATTTTCAGAATTAT
Locus tag: BpOF4_05120
BpOF4_05120 -223 4.5 AATTTTCAGAATTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadN
Ortholog function: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
Bacillus amyloliquefaciens FZB42 RBAM_029920 -132 4.5 AAATTTAAAAAAATT
Bacillus licheniformis DSM 13 BLi03466 -132 4.4 AAAATTCAGAAATTT
Bacillus cereus ATCC 14579 BC5004 -141 4.5 TTATTTCAGAAAATT
Bacillus halodurans C-125 BH3488 -134 4.8 AATTTTCAGAAAATC
Position: -131
Score: 4.9
Sequence: AAAATTCTGAAAATT
Locus tag: BpOF4_05765
BpOF4_05765 -131 4.9 AAAATTCTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: appD
Ortholog function: Oligopeptide transport ATP-binding protein (TC 3.A.1.5.1)
Anoxybacillus flavithermus WK1 Aflv_0356 -48 4.7 AATTTTTTGAATTTT
-26 4.5 TATTTTTTTAATATT
Oceanobacillus iheyensis HTE831 OB2453 -58 4.8 AATTTTCAGTATATT
Position: -240
Score: 4.5
Sequence: AAATTTTATAAAATT
Position: -43
Score: 4.4
Sequence: AATTTTGTCAAAATT
Locus tag: BpOF4_08040
BpOF4_08040 -240 4.5 AAATTTTATAAAATT
-43 4.4 AATTTTGTCAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dppC
Ortholog function: Oligopeptide ABC transporter permease
Bacillus halodurans C-125 BH0030 -46 4.5 ATTTGTCAAAATATT
Oceanobacillus iheyensis HTE831 OB3067 -112 4.5 TATTTTTACAAAATT
Position: -295
Score: 4.4
Sequence: AATTTTGACAAAATT
Position: -98
Score: 4.5
Sequence: AATTTTATAAAATTT
Locus tag: BpOF4_08045
BpOF4_08045 -295 4.4 AATTTTGACAAAATT
-98 4.5 AATTTTATAAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: oppA2
Ortholog function: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
Bacillus halodurans C-125 BH0031 -295 4.5 AATATTTTGACAAAT
Oceanobacillus iheyensis HTE831 OB0463 -122 4.4 AATTGAAAGAAAATT
Oceanobacillus iheyensis HTE831 OB3071 -186 4.8 AATTTTCGGAATATT
-87 4.7 AATTTTTTAAAAAAT
-86 4.5 ATTTTTTAAAAAATA
Position: -32
Score: 4.6
Sequence: AATTGTTTAAATATT
Locus tag: BpOF4_09845
BpOF4_09845 -32 4.6 AATTGTTTAAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yocS
Ortholog function: Sodium-dependent transporter
Bacillus pumilus SAFR-032 BPUM_1860 -62 4.9 TTTTTTCAGAAAATT
Bacillus halodurans C-125 BH0858 26 4.4 ATTTTTCAGTAAATA
Oceanobacillus iheyensis HTE831 OB0994 -56 4.4 TATTATCAGATTATT
Position: 3
Score: 4.5
Sequence: AATTTTGAAACAATT
Locus tag: BpOF4_09905
BpOF4_09905 3 4.5 AATTTTGAAACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gatB
Ortholog function: Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7)
Bacillus subtilis subsp. subtilis str. 168 BSU06690 -172 5 AATATTCAGAAAAAT
Bacillus amyloliquefaciens FZB42 RBAM_007090 -163 4.5 AATTTTCTGACATAT
Bacillus pumilus SAFR-032 BPUM_0646 -182 4.9 AATTTTCTGATAAAT
Bacillus licheniformis DSM 13 BLi00732 -167 5.1 AATATTCTGAATATT
Position: -96
Score: 5.2
Sequence: TATTTTCAGAAAATT
Locus tag: BpOF4_10755
BpOF4_10755 -96 5.2 TATTTTCAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnH
Ortholog function: Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2)
Oceanobacillus iheyensis HTE831 OB1004 -108 4.4 ATTTTTCTGAAATAT
Position: -49
Score: 4.5
Sequence: TATTTTCGGAATATT
Locus tag: BpOF4_11125
BpOF4_11125 -49 4.5 TATTTTCGGAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glyP
Ortholog function: Sodium/glycine symporter GlyP
Bacillus licheniformis DSM 13 BLi00817 -52 4.6 AACTTTCAGAATATT
Bacillus halodurans C-125 BH4033 -51 4.5 TATTATTTGAATATT
Position: -136
Score: 5
Sequence: ATTTTTTAGAAAATT
Locus tag: BpOF4_11475
BpOF4_11475 -136 5 ATTTTTTAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hpr
Ortholog function: Transcriptional repressor of sporulation and extracellular protein, MarR family
Bacillus subtilis subsp. subtilis str. 168 BSU09990 -90 4.4 ATTTATTAAAAAATT
Bacillus licheniformis DSM 13 BLi01078 -93 4.7 ATTTTTTAAAAAATT
Anoxybacillus flavithermus WK1 Aflv_2290 -87 4.4 ATTTATTAAAAAATT
Bacillus halodurans C-125 BH1185 -148 4.7 ATTTTTTAAAAAATT
Position: -171
Score: 4.4
Sequence: AATTTACTGAATAGT
Locus tag: BpOF4_14080
BpOF4_14080 -171 4.4 AATTTACTGAATAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ycjH
Ortholog function: Putative acetyl esterase YjcH (EC 3.1.1.-)
Bacillus subtilis subsp. subtilis str. 168 BSU11860 -73 4.6 AAATTTCTAATAATT
Bacillus amyloliquefaciens FZB42 RBAM_011920 -70 4.6 AAATTTCTAATAATT
Bacillus pumilus SAFR-032 BPUM_1118 -140 4.4 AATTTTCTGTATTTT
Geobacillus kaustophilus HTA426 GK0865 -172 4.5 AATTTTTTTAAATTT
Position: -86
Score: 4.9
Sequence: CATTTTCTGAAAATT
Locus tag: BpOF4_14415
BpOF4_14415 -86 4.9 CATTTTCTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nasF
Ortholog function: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)
Bacillus subtilis subsp. subtilis str. 168 BSU03280 -121 4.8 ATTTTTCATAAAATT
Bacillus amyloliquefaciens FZB42 RBAM_003490 -109 4.4 AATTTTTAGATTTTT
Position: -218
Score: 4
Sequence: TTTATTTAGAAATTT
Position: -209
Score: 4
Sequence: AAATTTCATAAAACA
Locus tag: BpOF4_15295
BpOF4_15295 -218 4 TTTATTTAGAAATTT
-209 4 AAATTTCATAAAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: metI
Ortholog function: Cystathionine gamma-synthase (EC 2.5.1.48)
Bacillus subtilis subsp. subtilis str. 168 BSU11870 -297 4.6 AATTATTAGAAATTT
-214 4.3 AACAATCAGAAAATT
Bacillus amyloliquefaciens FZB42 RBAM_011930 -314 4.6 AATTATTAGAAATTT
Bacillus pumilus SAFR-032 BPUM_1119 -297 4.4 AAAATACAGAAAATT
-287 4.1 AAATTTCAATTAATT
Bacillus licheniformis DSM 13 BLi01289 -164 4 AACAATCAGAATATT
Anoxybacillus flavithermus WK1 Aflv_2067 -228 4.4 ATTTTTCGGAAAATA
-200 4.6 AAAAATCAGAAAATT
Geobacillus kaustophilus HTA426 GK0866 -341 4.5 AAATTTAAAAAAATT
Bacillus cereus ATCC 14579 BC4253 -344 4.4 AATTTTTTAATAAAT
Paenibacillus sp. JDR-2 Pjdr2_4798 -6 4.4 AACTTTATGAAAATT
Position: -89
Score: 4.5
Sequence: AAATGTCAGAAAAAT
Locus tag: BpOF4_15820
BpOF4_15820 -89 4.5 AAATGTCAGAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltA
Ortholog function: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Bacillus halodurans C-125 BH1728 -94 4.5 AAATGTCAGAAAAAT
Oceanobacillus iheyensis HTE831 OB3099 -202 4.6 AAATTTCAAAAAATA
Position: -104
Score: 4.1
Sequence: TATAATTAGAAATTT
Locus tag: BpOF4_16700
BpOF4_16700 -104 4.1 TATAATTAGAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hutP
Ortholog function: Hut operon positive regulatory protein
Bacillus subtilis subsp. subtilis str. 168 BSU39340 -25 4.1 AGTTATCAGAATTTT
Bacillus amyloliquefaciens FZB42 RBAM_036400 -36 4.5 AGTTATCAGAATATT
Bacillus cereus ATCC 14579 BC3653 -36 4.8 AATATTCAAATAATT
Position: -102
Score: 4.9
Sequence: AATTTTATGATAATT
Locus tag: BpOF4_19170
BpOF4_19170 -102 4.9 AATTTTATGATAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: metA
Ortholog function: Homoserine O-succinyltransferase (EC 2.3.1.46)
Anoxybacillus flavithermus WK1 Aflv_1464 -51 5.3 AATTTTCTAAAAATT
Oceanobacillus iheyensis HTE831 OB0438 -89 4.4 AATTTTTAGATAAAA