Propagation of CodY regulog to Bacillus pseudofirmus OF4

Reference regulog properties
Source regulog:	CodY - Bacillales
Regulator type:	Transcription factor
Regulator family:	CodY
Regulation mode:
Biological process:	Amino acid metabolism
Effector:	Guanosine triphosphate; Branched-chain amino acids
Phylum:	Firmicutes
Propagated regulon:
Target genome	Bacillus pseudofirmus OF4
Orthologous TF(s)	BpOF4_00215
Regulated genes	49

Built upon 445 sites [see more]

Predicted regulatory interactions in *Bacillus pseudofirmus OF4*
	Locus tag	Position	Score	Sequence
Position: -77 Score: 5 Sequence: AATTTACTGAAAATT Locus tag: BpOF4_01000
	BpOF4_01000	-77	5	AATTTACTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ykzI
Ortholog function: Hypothetical protein
Bacillus cereus ATCC 14579	BC3959	-74	4.6	AAAAATCAGAAAATT

Position: -117 Score: 4.8 Sequence: AATATTCAAAAAAAT Locus tag: BpOF4_03545
	BpOF4_03545	-117	4.8	AATATTCAAAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ytcI
Ortholog function: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
Bacillus halodurans C-125	BH3201	-65	4.3	AATATTCAAAATAAA
Bacillus clausii KSM-K16	ABC3255	-175	4.3	CTTTTTTAGAAAATT

Position: -62 Score: 4.5 Sequence: AATTATATAAATATT Position: -53 Score: 4.7 Sequence: AATATTCTGATAATA Locus tag: BpOF4_04805
	BpOF4_04805	-62	4.5	AATTATATAAATATT
		-53	4.7	AATATTCTGATAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yuiA
Ortholog function: Conserved hypothetical protein
Bacillus subtilis subsp. subtilis str. 168	BSU32090	-36	4.9	TATTATCAGAAAATT
Bacillus amyloliquefaciens FZB42	RBAM_029140	-34	4.9	TATTATCAGAAAATT
Geobacillus kaustophilus HTA426	GK2951	-54	4.4	TTTTTACAGAAAATT
Bacillus halodurans C-125	BH3406	-47	4.3	AAAATTCTGATAATA

Position: -249 Score: 4.5 Sequence: AATTTCCTTAAAATT Position: -109 Score: 4.7 Sequence: AATTGTCAAATAATT Locus tag: BpOF4_04985
	BpOF4_04985	-249	4.5	AATTTCCTTAAAATT
		-109	4.7	AATTGTCAAATAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: BH3439
Ortholog function: Sodium/proline symporter
Bacillus licheniformis DSM 13	BLi03425	-56	5	AATTATTAGAAAATT
Anoxybacillus flavithermus WK1	Aflv_2428	-166	4.5	ATTTTTTAAAATATT
Bacillus cereus ATCC 14579	BC4071	-70	4.5	AATTTATTGATAATT
Bacillus halodurans C-125	BH3439	-240	4.5	AATTTTCGAAAAATA
		-62	5	AATTTTCTGAATATA
Bacillus clausii KSM-K16	ABC1961	-101	4.6	TTTTTTCAGAAAATA

Position: -223 Score: 4.5 Sequence: AATTTTCAGAATTAT Locus tag: BpOF4_05120
	BpOF4_05120	-223	4.5	AATTTTCAGAATTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadN
Ortholog function: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
Bacillus amyloliquefaciens FZB42	RBAM_029920	-132	4.5	AAATTTAAAAAAATT
Bacillus licheniformis DSM 13	BLi03466	-132	4.4	AAAATTCAGAAATTT
Bacillus cereus ATCC 14579	BC5004	-141	4.5	TTATTTCAGAAAATT
Bacillus halodurans C-125	BH3488	-134	4.8	AATTTTCAGAAAATC

Position: -131 Score: 4.9 Sequence: AAAATTCTGAAAATT Locus tag: BpOF4_05765
	BpOF4_05765	-131	4.9	AAAATTCTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: appD
Ortholog function: Oligopeptide transport ATP-binding protein (TC 3.A.1.5.1)
Anoxybacillus flavithermus WK1	Aflv_0356	-48	4.7	AATTTTTTGAATTTT
		-26	4.5	TATTTTTTTAATATT
Oceanobacillus iheyensis HTE831	OB2453	-58	4.8	AATTTTCAGTATATT

Position: -240 Score: 4.5 Sequence: AAATTTTATAAAATT Position: -43 Score: 4.4 Sequence: AATTTTGTCAAAATT Locus tag: BpOF4_08040
	BpOF4_08040	-240	4.5	AAATTTTATAAAATT
		-43	4.4	AATTTTGTCAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dppC
Ortholog function: Oligopeptide ABC transporter permease
Bacillus halodurans C-125	BH0030	-46	4.5	ATTTGTCAAAATATT
Oceanobacillus iheyensis HTE831	OB3067	-112	4.5	TATTTTTACAAAATT

Position: -295 Score: 4.4 Sequence: AATTTTGACAAAATT Position: -98 Score: 4.5 Sequence: AATTTTATAAAATTT Locus tag: BpOF4_08045
	BpOF4_08045	-295	4.4	AATTTTGACAAAATT
		-98	4.5	AATTTTATAAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: oppA2
Ortholog function: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
Bacillus halodurans C-125	BH0031	-295	4.5	AATATTTTGACAAAT
Oceanobacillus iheyensis HTE831	OB0463	-122	4.4	AATTGAAAGAAAATT
Oceanobacillus iheyensis HTE831	OB3071	-186	4.8	AATTTTCGGAATATT
		-87	4.7	AATTTTTTAAAAAAT
		-86	4.5	ATTTTTTAAAAAATA

Position: -32 Score: 4.6 Sequence: AATTGTTTAAATATT Locus tag: BpOF4_09845
	BpOF4_09845	-32	4.6	AATTGTTTAAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yocS
Ortholog function: Sodium-dependent transporter
Bacillus pumilus SAFR-032	BPUM_1860	-62	4.9	TTTTTTCAGAAAATT
Bacillus halodurans C-125	BH0858	26	4.4	ATTTTTCAGTAAATA
Oceanobacillus iheyensis HTE831	OB0994	-56	4.4	TATTATCAGATTATT

Position: 3 Score: 4.5 Sequence: AATTTTGAAACAATT Locus tag: BpOF4_09905
	BpOF4_09905	3	4.5	AATTTTGAAACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gatB
Ortholog function: Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7)
Bacillus subtilis subsp. subtilis str. 168	BSU06690	-172	5	AATATTCAGAAAAAT
Bacillus amyloliquefaciens FZB42	RBAM_007090	-163	4.5	AATTTTCTGACATAT
Bacillus pumilus SAFR-032	BPUM_0646	-182	4.9	AATTTTCTGATAAAT
Bacillus licheniformis DSM 13	BLi00732	-167	5.1	AATATTCTGAATATT

Position: -96 Score: 5.2 Sequence: TATTTTCAGAAAATT Locus tag: BpOF4_10755
	BpOF4_10755	-96	5.2	TATTTTCAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnH
Ortholog function: Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2)
Oceanobacillus iheyensis HTE831	OB1004	-108	4.4	ATTTTTCTGAAATAT

Position: -49 Score: 4.5 Sequence: TATTTTCGGAATATT Locus tag: BpOF4_11125
	BpOF4_11125	-49	4.5	TATTTTCGGAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glyP
Ortholog function: Sodium/glycine symporter GlyP
Bacillus licheniformis DSM 13	BLi00817	-52	4.6	AACTTTCAGAATATT
Bacillus halodurans C-125	BH4033	-51	4.5	TATTATTTGAATATT

Position: -136 Score: 5 Sequence: ATTTTTTAGAAAATT Locus tag: BpOF4_11475
	BpOF4_11475	-136	5	ATTTTTTAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hpr
Ortholog function: Transcriptional repressor of sporulation and extracellular protein, MarR family
Bacillus subtilis subsp. subtilis str. 168	BSU09990	-90	4.4	ATTTATTAAAAAATT
Bacillus licheniformis DSM 13	BLi01078	-93	4.7	ATTTTTTAAAAAATT
Anoxybacillus flavithermus WK1	Aflv_2290	-87	4.4	ATTTATTAAAAAATT
Bacillus halodurans C-125	BH1185	-148	4.7	ATTTTTTAAAAAATT

Position: -171 Score: 4.4 Sequence: AATTTACTGAATAGT Locus tag: BpOF4_14080
	BpOF4_14080	-171	4.4	AATTTACTGAATAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ycjH
Ortholog function: Putative acetyl esterase YjcH (EC 3.1.1.-)
Bacillus subtilis subsp. subtilis str. 168	BSU11860	-73	4.6	AAATTTCTAATAATT
Bacillus amyloliquefaciens FZB42	RBAM_011920	-70	4.6	AAATTTCTAATAATT
Bacillus pumilus SAFR-032	BPUM_1118	-140	4.4	AATTTTCTGTATTTT
Geobacillus kaustophilus HTA426	GK0865	-172	4.5	AATTTTTTTAAATTT

Position: -86 Score: 4.9 Sequence: CATTTTCTGAAAATT Locus tag: BpOF4_14415
	BpOF4_14415	-86	4.9	CATTTTCTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nasF
Ortholog function: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)
Bacillus subtilis subsp. subtilis str. 168	BSU03280	-121	4.8	ATTTTTCATAAAATT
Bacillus amyloliquefaciens FZB42	RBAM_003490	-109	4.4	AATTTTTAGATTTTT

Position: -218 Score: 4 Sequence: TTTATTTAGAAATTT Position: -209 Score: 4 Sequence: AAATTTCATAAAACA Locus tag: BpOF4_15295
	BpOF4_15295	-218	4	TTTATTTAGAAATTT
		-209	4	AAATTTCATAAAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: metI
Ortholog function: Cystathionine gamma-synthase (EC 2.5.1.48)
Bacillus subtilis subsp. subtilis str. 168	BSU11870	-297	4.6	AATTATTAGAAATTT
		-214	4.3	AACAATCAGAAAATT
Bacillus amyloliquefaciens FZB42	RBAM_011930	-314	4.6	AATTATTAGAAATTT
Bacillus pumilus SAFR-032	BPUM_1119	-297	4.4	AAAATACAGAAAATT
		-287	4.1	AAATTTCAATTAATT
Bacillus licheniformis DSM 13	BLi01289	-164	4	AACAATCAGAATATT
Anoxybacillus flavithermus WK1	Aflv_2067	-228	4.4	ATTTTTCGGAAAATA
		-200	4.6	AAAAATCAGAAAATT
Geobacillus kaustophilus HTA426	GK0866	-341	4.5	AAATTTAAAAAAATT
Bacillus cereus ATCC 14579	BC4253	-344	4.4	AATTTTTTAATAAAT
Paenibacillus sp. JDR-2	Pjdr2_4798	-6	4.4	AACTTTATGAAAATT

Position: -89 Score: 4.5 Sequence: AAATGTCAGAAAAAT Locus tag: BpOF4_15820
	BpOF4_15820	-89	4.5	AAATGTCAGAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltA
Ortholog function: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Bacillus halodurans C-125	BH1728	-94	4.5	AAATGTCAGAAAAAT
Oceanobacillus iheyensis HTE831	OB3099	-202	4.6	AAATTTCAAAAAATA

Position: -104 Score: 4.1 Sequence: TATAATTAGAAATTT Locus tag: BpOF4_16700
	BpOF4_16700	-104	4.1	TATAATTAGAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hutP
Ortholog function: Hut operon positive regulatory protein
Bacillus subtilis subsp. subtilis str. 168	BSU39340	-25	4.1	AGTTATCAGAATTTT
Bacillus amyloliquefaciens FZB42	RBAM_036400	-36	4.5	AGTTATCAGAATATT
Bacillus cereus ATCC 14579	BC3653	-36	4.8	AATATTCAAATAATT

Position: -102 Score: 4.9 Sequence: AATTTTATGATAATT Locus tag: BpOF4_19170
	BpOF4_19170	-102	4.9	AATTTTATGATAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: metA
Ortholog function: Homoserine O-succinyltransferase (EC 2.3.1.46)
Anoxybacillus flavithermus WK1	Aflv_1464	-51	5.3	AATTTTCTAAAAATT
Oceanobacillus iheyensis HTE831	OB0438	-89	4.4	AATTTTTAGATAAAA

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of CodY regulog to Bacillus pseudofirmus OF4

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --