Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of LexA regulog to Bacillus pseudofirmus OF4

Reference regulog properties
Source regulog: LexA - Bacillales
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus pseudofirmus OF4
Orthologous TF(s) BpOF4_19445
Regulated genes 11
Built upon 206 sites [see more]
Predicted regulatory interactions in Bacillus pseudofirmus OF4
Locus tag Position Score Sequence
Position: -58
Score: 4.4
Sequence: TTGAACGTTTGTTCGT
Position: -31
Score: 4.4
Sequence: GCAAACAAATGTTCTG
Locus tag: BpOF4_01370
BpOF4_01370 -58 4.4 TTGAACGTTTGTTCGT
-31 4.4 GCAAACAAATGTTCTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: yqjW
Ortholog function: DNA polymerase IV (EC 2.7.7.7)
Bacillus subtilis subsp. subtilis str. 168 BSU23710 -57 4.7 ACGAACATACTTTCGC
-29 4.9 GCGAACATAAGTTCTT
Bacillus amyloliquefaciens FZB42 RBAM_021830 -28 4.3 CAGAACAAATGTTCCC
Bacillus pumilus SAFR-032 BPUM_2102 -29 4.9 CAGAACATACGTTCTA
Bacillus halodurans C-125 BH2741 -57 4 ACGAACAAATATTCAC
-30 5 CAGAACAAATGTTCTT
Bacillus clausii KSM-K16 ABC3826 -85 4.1 CCGAACGTCTATTCGT
Paenibacillus sp. JDR-2 Pjdr2_3737 -66 4.2 GCGAACATACATTCGG
-37 4.7 ACGAACATACTTTCGC
Position: -34
Score: 5.4
Sequence: AAGAACATAAGTTCGT
Locus tag: BpOF4_02500
BpOF4_02500 -34 5.4 AAGAACATAAGTTCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhjD
Ortholog function: Hypothetical protein
Bacillus pumilus SAFR-032 BPUM_0989 -34 4.5 AAGAACGTGTGTTCTA
Bacillus licheniformis DSM 13 BLi01120 -45 4.6 CAGAACAAATGTTCCT
Bacillus halodurans C-125 BH2963 -40 4.5 ACGAACACATGTTCCT
Oceanobacillus iheyensis HTE831 OB1178 -34 4.5 ACGAACATATGATCTG
Position: -26
Score: 4.9
Sequence: AAGAACATTTGTTTGG
Locus tag: BpOF4_09855
BpOF4_09855 -26 4.9 AAGAACATTTGTTTGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: pcrA
Ortholog function: ATP-dependent DNA helicase
Bacillus subtilis subsp. subtilis str. 168 BSU06610 -36 4.4 TAGAACGTATGTTTTG
Bacillus amyloliquefaciens FZB42 RBAM_007010 -32 5.2 TAGAACATATGTTTGA
Bacillus pumilus SAFR-032 BPUM_0625 -32 5.2 TAGAACATAAGTTCGA
Bacillus licheniformis DSM 13 BLi00715 -33 5.2 TAGAACATATGTTTGA
Anoxybacillus flavithermus WK1 Aflv_0246 -13 4.5 GAGAACATATGTTTTG
Geobacillus kaustophilus HTA426 GK0275 -31 4.8 TAGAACATATGTTTTG
Bacillus halodurans C-125 BH0648 -8 4.6 AAGAACAAGTGTTTGG
Position: -97
Score: 4.1
Sequence: GAGAACGATTGTTTGT
Locus tag: BpOF4_10895
BpOF4_10895 -97 4.1 GAGAACGATTGTTTGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sda
Ortholog function: Sporulation inhibitor sda
Bacillus subtilis subsp. subtilis str. 168 BSU25690 -127 4.4 CAGAACGATTGTTCTT
Bacillus amyloliquefaciens FZB42 RBAM_023990 -144 4.4 CAGAACGATTGTTCTT
Bacillus pumilus SAFR-032 BPUM_2304 -145 4.4 CAGAACGATTGTTCTT
Bacillus licheniformis DSM 13 BLi02762 -145 4.2 CAGAACGATTGTTCTC
Anoxybacillus flavithermus WK1 Aflv_0810 -181 4 AAAAACCGACGTTTTT
-57 4.4 CAGAACGATTGTTCTT
Geobacillus kaustophilus HTA426 GK2527 -105 3.9 CAGAACGGTTGTTCTC
Position: -78
Score: 4.7
Sequence: AAGAATGTATGTTCTT
Locus tag: BpOF4_13105
BpOF4_13105 -78 4.7 AAGAATGTATGTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: BH1502
Ortholog function: Hypothetical protein
Bacillus pumilus SAFR-032 BPUM_2882 -75 4.4 CAGAACAAACGTTCCT
-46 4.8 AAGAACGTTTGTTCGA
Position: -206
Score: 4.2
Sequence: CAGAACGATTGTTCTC
Locus tag: BpOF4_13220
BpOF4_13220 -206 4.2 CAGAACGATTGTTCTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: sda
Ortholog function: Sporulation inhibitor sda
Bacillus subtilis subsp. subtilis str. 168 BSU25690 -127 4.4 CAGAACGATTGTTCTT
Bacillus amyloliquefaciens FZB42 RBAM_023990 -144 4.4 CAGAACGATTGTTCTT
Bacillus pumilus SAFR-032 BPUM_2304 -145 4.4 CAGAACGATTGTTCTT
Bacillus licheniformis DSM 13 BLi02762 -145 4.2 CAGAACGATTGTTCTC
Anoxybacillus flavithermus WK1 Aflv_0810 -181 4 AAAAACCGACGTTTTT
-57 4.4 CAGAACGATTGTTCTT
Geobacillus kaustophilus HTA426 GK2527 -105 3.9 CAGAACGGTTGTTCTC
Position: -58
Score: 4.8
Sequence: AGAAACATGTGTTCGT
Locus tag: BpOF4_16140
BpOF4_16140 -58 4.8 AGAAACATGTGTTCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: parE
Ortholog function: Topoisomerase IV subunit B (EC 5.99.1.-)
Bacillus subtilis subsp. subtilis str. 168 BSU18090 -220 4.9 ACAAACATACGTTCTC
Bacillus amyloliquefaciens FZB42 RBAM_017900 -243 4.3 GCGAACTCATGTTCTT
Bacillus pumilus SAFR-032 BPUM_1709 -246 4.8 TAGAACATTTGTTCTG
Anoxybacillus flavithermus WK1 Aflv_1444 -30 4.7 AGAAACAAATGTTCTT
Geobacillus kaustophilus HTA426 GK1751 -40 4.1 AGAAACAGGTGTTCTT
Bacillus cereus ATCC 14579 BC3597 -44 4.6 AGAAACATATGTTCTG
Bacillus halodurans C-125 BH2140 -72 4.9 CCGAACATGCGTTTGT
Bacillus clausii KSM-K16 ABC1989 -64 4.5 CAGAACAAACATTCGT
Oceanobacillus iheyensis HTE831 OB1693 -57 4.6 AAGAACAGTTGTTCTA
Paenibacillus sp. JDR-2 Pjdr2_2492 -172 4 GCGAATTTATGTTATT
Position: -76
Score: 4.9
Sequence: TAGAACTTATGTTTGC
Locus tag: BpOF4_19445
BpOF4_19445 -76 4.9 TAGAACTTATGTTTGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: lexA
Ortholog function: SOS-response transcriptional repressor
Bacillus subtilis subsp. subtilis str. 168 BSU17850 -139 4.2 AGGAATGTTTGTTCGC
-102 4.4 ACGAACAAACGTTTCT
-73 5.1 TCGAACCTATGTTTGT
Bacillus amyloliquefaciens FZB42 RBAM_017650 -140 4.5 AAGAATGTTTGTTCGC
-103 4.4 ACGAACAAACGTTTCT
-73 5.1 TCGAACCTATGTTTGT
Bacillus pumilus SAFR-032 BPUM_1686 -142 4.6 TAGAATGTGTGTTCGT
-103 4.4 ACGAACAAACGTTTCT
-73 5.1 TCGAACCTATGTTTGT
Bacillus licheniformis DSM 13 BLi02032 -346 4.1 ATGAATTTGTGTTTGT
-141 4.2 CAGAATGTTTGTTCGG
-103 4.6 ACGAACAAATGTTTCT
-73 5.1 TCGAACCTATGTTTGT
Anoxybacillus flavithermus WK1 Aflv_1506 -110 5.2 TAGAACATTTGTTTGT
-82 4.8 GAGAACTTTTGTTCGT
-53 5.2 TCGAACTTATGTTTGT
Geobacillus kaustophilus HTA426 GK1328 -136 4.5 TAGAATGTTTGTTCGC
-103 4.9 AGGAACATTTGTTTGT
-74 5.1 TCGAACCTATGTTTGT
Bacillus cereus ATCC 14579 BC3690 -70 5.2 TCGAACTTATGTTTGT
Bacillus halodurans C-125 BH2356 -107 4.7 AAGAACACTTGTTTGT
-78 4.9 TAGAACTTATGTTTGC
Bacillus clausii KSM-K16 ABC2167 -107 4.6 AGGAACAACTGTTCGT
-76 4.9 TAGAACTTATGTTTGC
Oceanobacillus iheyensis HTE831 OB1669 -142 4.8 CAGAACAATTGTTCTT
-107 4.6 CCGAACATATGATCTT
-78 4.2 TAGAACGAGTGTTTGC
Paenibacillus sp. JDR-2 Pjdr2_2621 -157 4.4 CCGAACGTTTGTTCTG
-118 5.1 ACGAACAAATGTTTGC
-72 5.1 AAGAACTTATGTTTGT
Position: -123
Score: 5.1
Sequence: CCGAATAAATGTTCGT
Locus tag: BpOF4_19580
BpOF4_19580 -123 5.1 CCGAATAAATGTTCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: recA
Ortholog function: Recombination protein A
Bacillus subtilis subsp. subtilis str. 168 BSU16940 -87 4.7 CCGAATATGCGTTCGC
Bacillus amyloliquefaciens FZB42 RBAM_016780 -86 4.7 CCGAATATGCGTTCGC
Bacillus pumilus SAFR-032 BPUM_1598 -88 5.2 TCGAATATGTGTTCGT
Bacillus licheniformis DSM 13 BLi01918 -259 4.3 TCGAATTTCAGTTCGC
-86 4.8 TCGAATATGCGTTCGC
Anoxybacillus flavithermus WK1 Aflv_1530 34 4.7 ACGAACATCTATTCGT
Geobacillus kaustophilus HTA426 GK1295 -85 4.4 ACGAATGGACGTTCGT
Bacillus cereus ATCC 14579 BC3779 -85 5.1 TCGAATAAATGTTCGA
Bacillus halodurans C-125 BH2383 -343 4 AAAAATTCACGTTTGT
-121 4.9 GCGAATAAATGTTCGT
Bacillus clausii KSM-K16 ABC2199 -132 5.3 ACGAATAAATGTTCGT
Oceanobacillus iheyensis HTE831 OB1624 -82 4.4 AAGAACATCCATTCGT
Paenibacillus sp. JDR-2 Pjdr2_3379 -297 3.9 GCGAACAATAATTTGT
-84 4.9 ACGAATGTATGTTCGA