Regulons of Phenylobacterium zucineum HLK1

Allows to visualize regulome content in the context of metabolic pathways



Type	Regulator	Effector	Pathway	Operons	Sites
TF	BglR3	Beta-glucoside; Glucose	Beta-glucosides utilization	2	2
TF	CC1627		Sugar utilization	3	2
TF	CadR-PbrR	Lead ion, (Pb2+); Cadmium, ion (Cd2+)	Lead resistance; Cadmium resistance	4	2
TF	CueR	Copper ion, (Cu+)	Copper resistance	5	4
TF	FixJ	Oxygen	Oxidative stress response	2	2
TF	FixK	Oxygen	Oxidative stress response; Nitrogen fixation	9	3
TF	Fur	Iron ion, (Fe2+)	Iron homeostasis	9	7
TF	HrcA	Heat shock	Heat shock response	2	1
TF	HutC	cis-Urocanic acid	Histidine utilization	3	3
TF	IscR	Iron-sulfur cluster redox state	Iron-sulfur cluster biogenesis	1	1
TF	LexA	DNA damage	SOS response	11	11
TF	LiuR		Branched-chain amino acid degradation	4	3
TF	NadQ		NAD biosynthesis	3	4
TF	NnrR	Nitric oxide	Denitrification	6	5
TF	NrdR	Deoxyribonucleotides	Deoxyribonucleotide biosynthesis	3	5
TF	NsrR	Nitric oxide	Nitrosative stress response	1	1
TF	NtrC	Phosphorylated NtrB, signal histidine kinase	Nitrogen assimilation	4	3
TF	PdxR3		Pyridoxine/pyridoxal homeostasis	1	1
TF	PdxW	Pyridoxal-5-phosphate	Pyridoxine/pyridoxal homeostasis	2	2
TF	PsrA	Oleate	Fatty acid degradation	19	6
TF	SahR	S-adenosylhomocysteine	Methionine metabolism	3	3
TF	Zur	Zinc ion, (Zn2+)	Zinc homeostasis	4	2
RNA	Cobalamin	Adenosylcobalamin	Cobalamin biosynthesis	1	1
RNA	FMN	Flavin mononucleotide	Riboflavin biosynthesis	1	1
RNA	Glycine	Glycine	Glycine metabolism	1	2
RNA	TPP	Thiamine pyrophosphate	Thiamine biosynthesis	1	1
RNA	mini-ykkC		Multidrug resistance	1	1
RNA	serC		Serine biosynthesis	1	1
RNA	yybP-ykoY			1	1

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --