# TF - NsrR: PHZ_c3177
>PHZ_c3176(coxA) Score=2.7 Pos=-41 [Phenylobacterium zucineum HLK1]
AGATGTATCCCCGATATATCT
# TF - NadQ: PHZ_c1373
>PHZ_c1931(nadE) Score=6 Pos=-46 [Phenylobacterium zucineum HLK1]
ATATGCTCAAAGTGAGCATTT
>PHZ_c0252(proA) Score=4.7 Pos=-28 [Phenylobacterium zucineum HLK1]
AAGTGCTCACCTTGAGCAAAT
>PHZ_c2607(nadA) Score=5.4 Pos=-98 [Phenylobacterium zucineum HLK1]
TTTTGCTCCGATTGAGCAAAA
>PHZ_c2607(nadA) Score=6.3 Pos=-33 [Phenylobacterium zucineum HLK1]
TAATGCTCACTATGAGCATAA
# TF - NrdR: PHZ_c1674
>PHZ_c1855(nrdJ) Score=4.9 Pos=-61 [Phenylobacterium zucineum HLK1]
CCCCAACATCTATTGC
>PHZ_c0341(nrdA) Score=5.5 Pos=-71 [Phenylobacterium zucineum HLK1]
CCACAACATGTAGGGG
>PHZ_c1855(nrdJ) Score=3.2 Pos=-93 [Phenylobacterium zucineum HLK1]
AGTCGATATGTTGGGG
>PHZ_c0344(nrdB) Score=3.5 Pos=-89 [Phenylobacterium zucineum HLK1]
ACTCTAGATGCGGCGT
>PHZ_c0344(nrdB) Score=5.5 Pos=-57 [Phenylobacterium zucineum HLK1]
CCACAAGATGTTGCGT
# TF - SahR: PHZ_c2652
>PHZ_c3448(metK) Score=6.1 Pos=-84 [Phenylobacterium zucineum HLK1]
ACATAAAGATTTCTTTATAG
>PHZ_c2652(sahR) Score=6.9 Pos=-26 [Phenylobacterium zucineum HLK1]
ACATAAAGATATCTTTATGT
>PHZ_c0093(ahcY) Score=6.1 Pos=-88 [Phenylobacterium zucineum HLK1]
ACATAAAGACTTCTTTATAT
# TF - Zur: PHZ_c0822
>PHZ_c0823(znuL) Score=6.2 Pos=-19 [Phenylobacterium zucineum HLK1]
GTTATGTTATTTCATAACAGTGA
>PHZ_c3369(yciC) Score=5.8 Pos=-75 [Phenylobacterium zucineum HLK1]
CATGTGTTACTTTATAACATCCC
# TF - NnrR: PHZ_c0618
>PHZ_c0617(COG3794) Score=4.7 Pos=-99 [Phenylobacterium zucineum HLK1]
GATTGTTCTGGCGCAAAG
>PHZ_c0619(norB) Score=4.5 Pos=-96 [Phenylobacterium zucineum HLK1]
GGTTGCGCAAGATCAACG
>PHZ_c0618(nnrR) Score=4.5 Pos=-198 [Phenylobacterium zucineum HLK1]
CGTTGATCTTGCGCAACC
>PHZ_c0614(nirK) Score=4.2 Pos=-85 [Phenylobacterium zucineum HLK1]
GGTTGACCGTGCGCAATG
>PHZ_c1196(dnrN) Score=5.1 Pos=-64 [Phenylobacterium zucineum HLK1]
GTTTGTCCGGGCGCAAAG
# TF - HutC: PHZ_c1485, PHZ_c0463
>PHZ_c1482(omp) Score=4.7 Pos=-111 [Phenylobacterium zucineum HLK1]
CTTATGTATATACATGAC
>PHZ_c0464(hutF) Score=6.1 Pos=-41 [Phenylobacterium zucineum HLK1]
AATATGTATAGACATTAT
>PHZ_c0465(hutI) Score=6.1 Pos=-44 [Phenylobacterium zucineum HLK1]
ATAATGTCTATACATATT
# TF - IscR: PHZ_c1722
>PHZ_c1722(iscR) Score=8.1 Pos=-138 [Phenylobacterium zucineum HLK1]
ATACTTGACTGCTGCGCTAGGTCTT
# TF - NtrC: PHZ_c1730
>PHZ_c1361(glnK) Score=4 Pos=-211 [Phenylobacterium zucineum HLK1]
TGCACAGAAATCGGGCG
>PHZ_c1573(glnB) Score=4.1 Pos=-140 [Phenylobacterium zucineum HLK1]
CGCCCATTCCTTAGGCG
>PHZ_c1732(nifR3) Score=4.6 Pos=-10 [Phenylobacterium zucineum HLK1]
TGATTAGAAAATGAGCA
# TF - Fur: PHZ_c3455
>PHZ_c1093(omp5) Score=4.7 Pos=-67 [Phenylobacterium zucineum HLK1]
GATGAGATTGACTTGCAAC
>PHZ_c2825(feoA) Score=3.8 Pos=-43 [Phenylobacterium zucineum HLK1]
ACTGATAATCGTTCTCAAT
>PHZ_c1805(nuoA) Score=5.1 Pos=-87 [Phenylobacterium zucineum HLK1]
GTTGCGAGCGGCTCGCAAG
>PHZ_c0805(PF03929) Score=5.2 Pos=-36 [Phenylobacterium zucineum HLK1]
AATGCGAGGCGTTCGCAAC
>PHZ_c2766(omp6) Score=5.3 Pos=-67 [Phenylobacterium zucineum HLK1]
ATTGCGAGTTATTCGCAAC
>PHZ_c0293(omp2) Score=5.1 Pos=-84 [Phenylobacterium zucineum HLK1]
CTTGCGAATGATTCTCATT
>PHZ_p0219(omp7) Score=5.2 Pos=-76 [Phenylobacterium zucineum HLK1]
CTTGCGACTCATTCTCATT
# TF - LexA: PHZ_c1762
>PHZ_c1782(dnaE) Score=0.1 Pos=-205 [Phenylobacterium zucineum HLK1]
GAACAAAAGGCGAAT
>PHZ_c0224(PF06319) Score=0.8 Pos=-26 [Phenylobacterium zucineum HLK1]
GAACGGAGGCGGAAC
>PHZ_c3266(imuA) Score=0.7 Pos=-34 [Phenylobacterium zucineum HLK1]
GAACGGAAGTGGAAC
>PHZ_c1782(dnaE) Score=1 Pos=-188 [Phenylobacterium zucineum HLK1]
GAACGAACAAGGAAC
>PHZ_c2755(yoaA) Score=5.2 Pos=-42 [Phenylobacterium zucineum HLK1]
GTTCCCCTTCCGTTC
>PHZ_c0985(recA) Score=1.1 Pos=-86 [Phenylobacterium zucineum HLK1]
GAACAAAGGAGGTAC
>PHZ_c3480(PF01078) Score=5 Pos=-80 [Phenylobacterium zucineum HLK1]
GTTCTATTTTCGTTC
>PHZ_c3424(COG5529) Score=5.1 Pos=-41 [Phenylobacterium zucineum HLK1]
GTTCTCTCTTCGTTC
>PHZ_c1762(lexA) Score=5.1 Pos=-31 [Phenylobacterium zucineum HLK1]
GTTTGCGCTTTGTTC
>PHZ_c1946(uvrA) Score=5.1 Pos=-114 [Phenylobacterium zucineum HLK1]
GTTCGCCTTGCGTTC
>PHZ_c2761(lhr) Score=1 Pos=-32 [Phenylobacterium zucineum HLK1]
AAACGAACCGCGAAC
# TF - LiuR: PHZ_c2019, PHZ_c3353
>PHZ_c2336(acdL2) Score=5.1 Pos=-94 [Phenylobacterium zucineum HLK1]
GTTTACGTTGACGTTAGC
>PHZ_c2336(acdL2) Score=5.6 Pos=-88 [Phenylobacterium zucineum HLK1]
GTTGACGTTAGCGTCATC
>PHZ_c3353(liuR) Score=4.9 Pos=-64 [Phenylobacterium zucineum HLK1]
CTTGACGTAAACGGAAAG
# TF - PsrA: PHZ_c0903
>PHZ_c0904 Score=5.3 Pos=-36 [Phenylobacterium zucineum HLK1]
GTTCAAACGATTGTTCGCCT
>PHZ_c3135 Score=5.4 Pos=-39 [Phenylobacterium zucineum HLK1]
AGTCAAACAACTGTTTGGGA
>PHZ_c3105 Score=5.2 Pos=-116 [Phenylobacterium zucineum HLK1]
TTTCAAACGGCCGTTAGACC
>PHZ_c3217(fadB) Score=4.6 Pos=-81 [Phenylobacterium zucineum HLK1]
CCTATAACACGCGTTTGAAT
>PHZ_c0760(fadA) Score=5 Pos=-53 [Phenylobacterium zucineum HLK1]
GTTCCAACGCTTGTTTAAAA
>PHZ_c3174(acdH) Score=6 Pos=-32 [Phenylobacterium zucineum HLK1]
ATTCAAACAAGCGTTTGAAC
# RNA - serC
>PHZ_c3273(serC) Score=47.1 Pos=-45 [Phenylobacterium zucineum HLK1]
CCGGCGGGCCACGCCCCCCCAACGGGGCGCAGCCCATCTGCAAGGATGGGAGAC
# RNA - Glycine
>PHZ_c0592(gcvT) Score=40.2 Pos=-173 [Phenylobacterium zucineum HLK1]
GCTGATGAACGCTGGAAAGTTCCGCGCCTCATAAGGGACGCGGGCGCCGAAGGAGCAGGGGGCCGTCCAACCACCGGACGGCTCGAAATCTCTCAGGCCAAGGGACAGCGGGGGCGCG
>PHZ_c0592(gcvT) Score=42.4 Pos=-271 [Phenylobacterium zucineum HLK1]
GCCGACTCTCGCGGGAGAGATCTTCCAAGGCCTCCGGGCCGCGGAGGGAGCCGAAGGCGCAACCGCCCCGGAAACGCTCAGGCAAAAGGACCGCGCGGG
# RNA - FMN
>PHZ_c1938(ribH2) Score=65.6 Pos=-267 [Phenylobacterium zucineum HLK1]
TGCGTTCTCAGGGCGGGGTGAAACTCCCCACCGGCGGTAATGCCCTCCAGACCTTGGCGTAGCCTCGGCGACGGAGGGACGAGCCCGCGGGCGCCTGGGCCTTCGTCATAGGAAGGTCCCAGGGACGAGCAGACCCGGTGCGATCCCGGGGCCGACGGTCATAGTCCGGTTATGAGAACGGCCGC
# RNA - yybP-ykoY
>PHZ_c1810(COG2119) Score=33.4 Pos=-193 [Phenylobacterium zucineum HLK1]
GCGGGCCTTCTACGGGGAGTAGCCGTCCGCGCGACAGCGGAGCCCGCGTCAACAGACTTGGCCGATCCGGCCATGGCGCAGGCGGCGGACCTTCAGGGGTCCGGATTGGCGAGACCGGCGATGCGGCA
# RNA - mini-ykkC
>PHZ_c0240(ykkC) Score=42.7 Pos=-69 [Phenylobacterium zucineum HLK1]
GCCGGGGACGACCCCGGCGCGTCTCCTTTCCCGGGAGGACGACCTCCGT
# RNA - TPP
>PHZ_c2909(thiC) Score=61.5 Pos=-153 [Phenylobacterium zucineum HLK1]
GCGCCAATCCTCGGGGGGCCGCGCGCAAGCGGCTGAGAGGTGGGTGAGCCCACGACCCGTCGAACCTGATCCGGGTCATGCCGGCGAAGGGAAGGGCCTGTCCGCAAAC
# RNA - Cobalamin
>PHZ_c1918(btuB) Score=108.9 Pos=-290 [Phenylobacterium zucineum HLK1]
CGGCGCACTTACCGGGCGTGGCGCCCGAAAGGGCTGAATAGGGAATGCGGTGCGTGCGCTTGCGCACAAGGCCGCGGCTGCCCCCGCAACTGTAAGCGGCGAGCCTTCGACCACCCAAAGCCACTGGGACCGCAAGGTCCTGGGAAGGCCGGTCGAGGGCCCTGACCCGCGAGCCAGGAGACCTGCCACGAGCCGTGGTCACGCG
# TF - PdxR3: PHZ_c3113
>PHZ_c3114(COG2364) Score=12.4 Pos=-60 [Phenylobacterium zucineum HLK1]
AAGGCCACGCT-(4)-CGACTGGACCT-(7)-AAGGCCAGTTG
# TF - HrcA: PHZ_c3470
>PHZ_c3181(groS) Score=6.9 Pos=-93 [Phenylobacterium zucineum HLK1]
TTAGCACTCAAGGGCCGAGACTGCTAA
# TF - CueR: PHZ_p0210, PHZ_c1468
>PHZ_p0211(copA) Score=6 Pos=-59 [Phenylobacterium zucineum HLK1]
ACCCTCCCATCATGGGAAGGT
>PHZ_c1481(copC) Score=6.1 Pos=-129 [Phenylobacterium zucineum HLK1]
ACCTTCCCACTATTGGAAGGT
>PHZ_c1479(copZ) Score=5.6 Pos=-41 [Phenylobacterium zucineum HLK1]
ACCCTCCCACTGTGGGAAGCT
>PHZ_c1469(copA) Score=5.1 Pos=-59 [Phenylobacterium zucineum HLK1]
ACCCTCCCATGGTGGGAAACT
# TF - CadR-PbrR: PHZ_p0235, PHZ_c1428
>PHZ_p0236(czcD) Score=5.7 Pos=-19 [Phenylobacterium zucineum HLK1]
ATCCTCTACCTACTAGAGGAT
>PHZ_c1429(czcD) Score=6.5 Pos=-103 [Phenylobacterium zucineum HLK1]
ATCCTCTAGCGACTAGAGGAT
# TF - CC1627: PHZ_c2158
>PHZ_c2158 Score=5.4 Pos=-40 [Phenylobacterium zucineum HLK1]
CGATGTAATCGATTACACGT
>PHZ_c2157 Score=5.4 Pos=-67 [Phenylobacterium zucineum HLK1]
ACGTGTAATCGATTACATCG
# TF - BglR3: PHZ_c2927
>PHZ_c2928(bglT) Score=6 Pos=-131 [Phenylobacterium zucineum HLK1]
GCTCCGCCACGTCGTAGATC
>PHZ_c2927(bglR3) Score=6 Pos=14 [Phenylobacterium zucineum HLK1]
GATCTACGACGTGGCGGAGC
# TF - PdxW: PHZ_c0123
>PHZ_c0122(pdxO) Score=12.1 Pos=-88 [Phenylobacterium zucineum HLK1]
AAGTGGTC-(15)-GATTGGAC-(10)-GACCACAT
>PHZ_c3169(SSF55729) Score=10.9 Pos=-82 [Phenylobacterium zucineum HLK1]
AAGTGGTC-(15)-AACTGGAC-(10)-GTCCACTT
# TF - FixJ: PHZ_p0188, PHZ_c2804
>PHZ_c2798(fixK) Score=4.3 Pos=-87 [Phenylobacterium zucineum HLK1]
TTAGGTGCGACCCCTTAG
>PHZ_c2798(fixK) Score=4.8 Pos=-73 [Phenylobacterium zucineum HLK1]
TTAGGGGGACGCCACGAA
# TF - FixK: PHZ_p0186, PHZ_c2798
>PHZ_c2806(hemN) Score=5.3 Pos=-52 [Phenylobacterium zucineum HLK1]
TCCTTGATCTGAATCAGGGC
>PHZ_c2798(fixK) Score=5 Pos=-136 [Phenylobacterium zucineum HLK1]
GATGTGACGGCGATCAAAGC
>PHZ_c2814(ccoN) Score=6 Pos=-40 [Phenylobacterium zucineum HLK1]
GCCTTGACCGATATCAAGGC