Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Photorhabdus luminescens subsp. laumondii TTO1

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF AbgR p-aminobenzoyl-glutamate p-aminobenzoyl-glutamate utilization 2 2
TF AcrR Rhodamine 6G; Ethidium bromide; Proflavin Multidrug resistance 2 2
TF AgaR2 Galactosamine-6-phosphate; N-acetylgalactosamine-6-phosphate N-acetylgalactosamine utilization 1 1
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 10 17
TF BirA Biotin Biotin biosynthesis 2 2
TF Crp Cyclic 3',5'-AMP Carbon catabolism 171 125
TF CueR Copper ion, (Cu+) Copper resistance 3 2
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 3 3
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 12 12
TF Fnr Oxygen Energy metabolism; Anaerobic metabolism 46 41
TF FruR Fructose-1-phosphate; Fructose-1,6-diphosphate Central carbohydrate metabolism 24 12
TF Fur Iron ion, (Fe2+) Iron homeostasis 32 51
TF GcvA Glycine Glycine metabolism 2 3
TF GlpR Glycerol 3-phosphate Glycerol utilization 4 3
TF GntR Gluconate Gluconate utilization 1 2
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 5 3
TF HutC cis-Urocanic acid Histidine utilization 2 3
TF IclR Pyruvate; Glyoxylate Glyoxylate bypass 1 1
TF IlvY 2-Acetolactate Branched-chain amino acid biosynthesis 2 4
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 3 4
TF LeuO Guanosine 3',5'-bis(diphosphate) 2 3
TF LexA DNA damage SOS response 19 17
TF LsrR 4,5-dihydroxypentan-2,3-dione Quorum sensing; Biofilm formation 2 2
TF LysR LL-2,6-Diaminopimelate Lysine biosynthesis 2 2
TF MetJ S-adenosylmethionine Methionine metabolism; Methionine biosynthesis 12 10
TF MetR Homocysteine Methionine biosynthesis 7 9
TF ModE Molybdate Molybdopterin biosynthesis; Molybdenum homeostasis 2 1
TF MprA 2,4-Dinitrophenol; Carbonyl cyanide m-chlorophenylhydrazone Multidrug resistance 2 2
TF NadR NAD NAD biosynthesis 4 1
TF NagC N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 6 4
TF NarP Nitrate; Nitrite Nitrate and nitrite respiration 9 1
TF NhaR Potassium ion Osmotic stress response 2 1
TF NrdR Deoxyribonucleotides Ribonucleotide reductases 3 6
TF NsrR Nitric oxide Nitrosative stress response 4 3
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 5 5
TF PMI3555 2 4
TF PdhR Pyruvate Pyruvate metabolism 4 2
TF PurR Hypoxanthine; Guanine Purine metabolism 26 16
TF RbsR Ribose Ribose utilization 1 2
TF STM1555 Sugar utilization 2 2
TF SgaR Ascorbate-6-phosphate Ascorbate utilization 2 4
TF TreR Trehalose-6-phosphate Trehalose utilization 1 1
TF TrpR Tryptophan Tryptophan biosynthesis 5 2
TF TyrR Tyrosine; Phenylalanine Aromatic amino acid metabolism 7 5
TF UxuR Glucuronate Glucuronate utilization 3 5
TF YdcR 2 1
TF ZntR Zinc ion, (Zn2+) Zinc resistance 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 3 3
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 3 1
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA His_leader Histidine biosynthesis 1 1
RNA Leu_leader Branched-chain amino acid biosynthesis 1 1
RNA MOCO_RNA_motif Molybdenum Molybdopterin biosynthesis 1 1
RNA S15 Ribosome biogenesis 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 3 2
RNA Thr_leader Threonine biosynthesis 1 1
RNA Trp_leader Tryptophan biosynthesis 1 1
RNA mini-ykkC Multidrug resistance 1 1
RNA ykoK Magnesium ion, (Mg2+) Magnesium homeostasis 1 1
RNA yybP-ykoY 2 2
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