Regulon of FadR in Photorhabdus luminescens subsp. laumondii TTO1

Properties
Regulator type:	Transcription factor
TF locus tag:	plu2562
Regulator family:	GntR/Others
Regulation mode:	activator (repressor)
Biological process:	Fatty acid degradation
Effector:	Palmitoyl-CoA; Oleoyl-CoA
Regulog:	FadR - Enterobacteriales
Statistics of regulated genes:
- Genes	13
- Operons	11
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 130 sites [see more]

Member of regulog collections

By taxonomy - Enterobacteriales
By trascription factor - FadR
By TF family - GntR/Others
By effector - Palmitoyl-CoA
By effector - Oleoyl-CoA
By pathway - Fatty acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -39 Score: 4.8 Sequence: CACTGGTCTTACCTGTT Locus tag: plu2685 Name: yebV Funciton: hypothetical protein
	plu2685	yebV	hypothetical protein
Position: -57 Score: 3.2 Sequence: TTCTGATATAATTTCAT Locus tag: plu2562 Name: fadR Funciton: Transcriptional regulator for fatty acid degradation FadR, GntR family
	plu2562	fadR	Transcriptional regulator for fatty acid degradation FadR, GntR family
Position: -277 Score: 3.8 Sequence: AACTCACACTACCTCTT Position: -94 Score: 4.7 Sequence: AACTGGTCTGATTTGTC Locus tag: plu3202 Name: fadL Funciton: Long-chain fatty acid transport protein
	plu3202	fadL	Long-chain fatty acid transport protein
Position: -95 Score: 4.7 Sequence: AACTGGTACGCTGAGTT Locus tag: plu2134 Name: fadD Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
	plu2134	fadD	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -75 Score: 3.2 Sequence: GTCTGATCGGAGTTGTT Locus tag: plu1772 Name: fabA Funciton: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
	plu1772	fabA	3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
Position: -57 Score: 4.6 Sequence: AACAGGTCCGACCTCTG Locus tag: plu1192 Name: fadE Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	plu1192	fadE	Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Position: -89 Score: 4.7 Sequence: CACTCATCCGACCACTT Locus tag: plu3990 Name: fadH Funciton: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
	plu3990	fadH	2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
Position: -81 Score: 4.7 Sequence: ATCAGGTCAGACCTGTC Locus tag: plu3201 Name: fadI Funciton: FadI component of anaerobic fatty acid oxidation complex Locus tag: plu3200 Name: fadJ Funciton: FadJ component of anaerobic fatty acid oxidation complex
	plu3201	fadI	FadI component of anaerobic fatty acid oxidation complex
	plu3200	fadJ	FadJ component of anaerobic fatty acid oxidation complex
Position: -43 Score: 5 Sequence: ATCTGGTCATACCAGAT Locus tag: plu4402 Name: fadB Funciton: fatty oxidation complex, alpha subunit FadB Locus tag: plu4403 Name: fadA Funciton: fatty oxidation complex, beta subunit FadA
	plu4402	fadB	fatty oxidation complex, alpha subunit FadB
	plu4403	fadA	fatty oxidation complex, beta subunit FadA
Position: -86 Score: 3.2 Sequence: CACACATCGGATGAGTG Locus tag: plu4392 Name: iclR Funciton: Acetate operon transcriptional repressor, IclR family
	plu4392	iclR	Acetate operon transcriptional repressor, IclR family
Position: -96 Score: 3.3 Sequence: TCCTGATCGGACTTGTT Locus tag: plu3184 Name: fabB Funciton: 3-oxoacyl-(acyl carrier protein) synthase
	plu3184	fabB	3-oxoacyl-(acyl carrier protein) synthase

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of FadR in Photorhabdus luminescens subsp. laumondii TTO1

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --