Regulon of FadR in Photorhabdus luminescens subsp. laumondii TTO1
| Regulator type: | Transcription factor |
| TF locus tag: | plu2562 |
| Regulator family: | GntR/Others |
| Regulation mode: | activator (repressor) |
| Biological process: | Fatty acid degradation |
| Effector: | Palmitoyl-CoA; Oleoyl-CoA |
| Regulog: | FadR - Enterobacteriales |
| Statistics of regulated genes: | |
| - Genes | 13 |
| - Operons | 11 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Enterobacteriales
- By trascription factor - FadR
- By TF family - GntR/Others
- By effector - Palmitoyl-CoA
- By effector - Oleoyl-CoA
- By pathway - Fatty acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -39
Score: 4.8 Sequence: CACTGGTCTTACCTGTT
Locus tag: plu2685
Name: yebV Funciton: hypothetical protein |
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yebV
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hypothetical protein
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Position: -57
Score: 3.2 Sequence: TTCTGATATAATTTCAT
Locus tag: plu2562
Name: fadR Funciton: Transcriptional regulator for fatty acid degradation FadR, GntR family |
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fadR
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Transcriptional regulator for fatty acid degradation FadR, GntR family
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Position: -277
Score: 3.8 Sequence: AACTCACACTACCTCTT
Position: -94
Score: 4.7 Sequence: AACTGGTCTGATTTGTC
Locus tag: plu3202
Name: fadL Funciton: Long-chain fatty acid transport protein |
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fadL
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Long-chain fatty acid transport protein
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Position: -95
Score: 4.7 Sequence: AACTGGTACGCTGAGTT
Locus tag: plu2134
Name: fadD Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
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fadD
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Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
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Position: -75
Score: 3.2 Sequence: GTCTGATCGGAGTTGTT
Locus tag: plu1772
Name: fabA Funciton: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
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fabA
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3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
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Position: -57
Score: 4.6 Sequence: AACAGGTCCGACCTCTG
Locus tag: plu1192
Name: fadE Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
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fadE
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Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
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Position: -89
Score: 4.7 Sequence: CACTCATCCGACCACTT
Locus tag: plu3990
Name: fadH Funciton: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) |
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fadH
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2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
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Position: -81
Score: 4.7 Sequence: ATCAGGTCAGACCTGTC
Locus tag: plu3201
Name: fadI Funciton: FadI component of anaerobic fatty acid oxidation complex
Locus tag: plu3200
Name: fadJ Funciton: FadJ component of anaerobic fatty acid oxidation complex |
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fadI
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FadI component of anaerobic fatty acid oxidation complex
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fadJ
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FadJ component of anaerobic fatty acid oxidation complex
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Position: -43
Score: 5 Sequence: ATCTGGTCATACCAGAT
Locus tag: plu4402
Name: fadB Funciton: fatty oxidation complex, alpha subunit FadB
Locus tag: plu4403
Name: fadA Funciton: fatty oxidation complex, beta subunit FadA |
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fadB
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fatty oxidation complex, alpha subunit FadB
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fadA
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fatty oxidation complex, beta subunit FadA
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Position: -86
Score: 3.2 Sequence: CACACATCGGATGAGTG
Locus tag: plu4392
Name: iclR Funciton: Acetate operon transcriptional repressor, IclR family |
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iclR
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Acetate operon transcriptional repressor, IclR family
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Position: -96
Score: 3.3 Sequence: TCCTGATCGGACTTGTT
Locus tag: plu3184
Name: fabB Funciton: 3-oxoacyl-(acyl carrier protein) synthase |
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fabB
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3-oxoacyl-(acyl carrier protein) synthase
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |