Regulon of Fnr in Photorhabdus luminescens subsp. laumondii TTO1

Properties
Regulator type:	Transcription factor
TF locus tag:	plu2179
Regulator family:	CRP
Regulation mode:	activator (repressor)
Biological process:	Energy metabolism; Anaerobic metabolism
Effector:	Oxygen
Regulog:	Fnr - Enterobacteriales
Statistics of regulated genes:
- Genes	92
- Operons	37
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 685 sites [see more]

Member of regulog collections

By taxonomy - Enterobacteriales
By TF family - CRP
By effector - Oxygen
By pathway - Energy metabolism
By pathway - Anaerobic metabolism

Regulated operons
	Locus Tag	Name	Function
Position: -103 Score: 5.1 Sequence: TTGATGAAAATCAA Locus tag: plu2759 Name: upp Funciton: Uracil phosphoribosyltransferase (EC 2.4.2.9)
	plu2759	upp	Uracil phosphoribosyltransferase (EC 2.4.2.9)
Position: -207 Score: 3.8 Sequence: TTGTTATTTGTAAA Locus tag: plu3089 Name: nuoA Funciton: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) Locus tag: plu3088 Name: nuoB Funciton: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) Locus tag: plu3087 Name: nuoD Funciton: NADH-ubiquinone oxidoreductase chains C and D (EC 1.6.5.3) Locus tag: plu3086 Name: nuoE Funciton: NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) Locus tag: plu3085 Name: nuoF Funciton: NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) Locus tag: plu3084 Name: nuoG Funciton: NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) Locus tag: plu3083 Name: nuoH Funciton: NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3) Locus tag: plu3082 Name: nuoI Funciton: NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3) Locus tag: plu3081 Name: nuoJ Funciton: NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3) Locus tag: plu3080 Name: nuoK Funciton: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3) Locus tag: plu3079 Name: nuoL Funciton: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) Locus tag: plu3078 Name: nuoM Funciton: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) Locus tag: plu3077 Name: nuoN Funciton: NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)
	plu3089	nuoA	NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
	plu3088	nuoB	NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
	plu3087	nuoD	NADH-ubiquinone oxidoreductase chains C and D (EC 1.6.5.3)
	plu3086	nuoE	NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)
	plu3085	nuoF	NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)
	plu3084	nuoG	NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)
	plu3083	nuoH	NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
	plu3082	nuoI	NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)
	plu3081	nuoJ	NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
	plu3080	nuoK	NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
	plu3079	nuoL	NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)
	plu3078	nuoM	NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
	plu3077	nuoN	NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)
Position: -233 Score: 4.1 Sequence: TTGATTCAGAACAG Locus tag: plu3371 Name: ung Funciton: Uracil-DNA glycosylase (EC 3.2.2.27)
	plu3371	ung	Uracil-DNA glycosylase (EC 3.2.2.27)
Position: -127 Score: 4 Sequence: TTGTGAAAAAACAA Locus tag: plu1426 Name: sdhC Funciton: Succinate dehydrogenase cytochrome b-556 subunit Locus tag: plu1427 Name: sdhD Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein Locus tag: plu1428 Name: sdhA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Locus tag: plu1429 Name: sdhB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
	plu1426	sdhC	Succinate dehydrogenase cytochrome b-556 subunit
	plu1427	sdhD	Succinate dehydrogenase hydrophobic membrane anchor protein
	plu1428	sdhA	Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
	plu1429	sdhB	Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Position: -225 Score: 3.9 Sequence: ATTATTAAAAACAA Locus tag: plu0047 Name: atpI Funciton: ATP synthase protein I Locus tag: plu0046 Name: atpB Funciton: ATP synthase A chain (EC 3.6.3.14) Locus tag: plu0045 Name: atpE Funciton: ATP synthase C chain (EC 3.6.3.14) Locus tag: plu0044 Name: atpF Funciton: ATP synthase B chain (EC 3.6.3.14) Locus tag: plu0043 Name: atpH Funciton: ATP synthase delta chain (EC 3.6.3.14) Locus tag: plu0042 Name: atpA Funciton: ATP synthase alpha chain (EC 3.6.3.14) Locus tag: plu0041 Name: atpG Funciton: ATP synthase gamma chain (EC 3.6.3.14) Locus tag: plu0040 Name: atpD Funciton: ATP synthase beta chain (EC 3.6.3.14) Locus tag: plu0039 Name: atpC Funciton: ATP synthase epsilon chain (EC 3.6.3.14)
	plu0047	atpI	ATP synthase protein I
	plu0046	atpB	ATP synthase A chain (EC 3.6.3.14)
	plu0045	atpE	ATP synthase C chain (EC 3.6.3.14)
	plu0044	atpF	ATP synthase B chain (EC 3.6.3.14)
	plu0043	atpH	ATP synthase delta chain (EC 3.6.3.14)
	plu0042	atpA	ATP synthase alpha chain (EC 3.6.3.14)
	plu0041	atpG	ATP synthase gamma chain (EC 3.6.3.14)
	plu0040	atpD	ATP synthase beta chain (EC 3.6.3.14)
	plu0039	atpC	ATP synthase epsilon chain (EC 3.6.3.14)
Position: -117 Score: 4.1 Sequence: ATGATGTTAATCAT Locus tag: plu3095 Name: ackA Funciton: Acetate kinase (EC 2.7.2.1)
	plu3095	ackA	Acetate kinase (EC 2.7.2.1)
Position: -306 Score: 4.2 Sequence: TTGATAAAGAACAG Locus tag: plu4119 Name: glpT Funciton: Glycerol-3-phosphate transporter Locus tag: plu4120 Name: glpQ Funciton: Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46)
	plu4119	glpT	Glycerol-3-phosphate transporter
	plu4120	glpQ	Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46)
Position: -205 Score: 4.1 Sequence: TTGAACTAAATCAC Locus tag: plu1196 Name: nqrA Funciton: Na-translocating NADH-quinone reductase, subunit A (EC 1.6.5.-) Locus tag: plu1197 Name: nqrB Funciton: Na-translocating NADH-quinone reductase, subunit B (EC 1.6.5.-) Locus tag: plu1198 Name: nqrC Funciton: Na-translocating NADH-quinone reductase, subunit C (EC 1.6.5.-) Locus tag: plu1199 Name: nqrD Funciton: Na-translocating NADH-quinone reductase, subunit D (EC 1.6.5.-) Locus tag: plu1200 Name: nqrE Funciton: Na-translocating NADH-quinone reductase, subunit E (EC 1.6.5.-) Locus tag: plu1201 Name: nqrF Funciton: Na-translocating NADH-quinone reductase, subunit F (EC 1.6.5.-)
	plu1196	nqrA	Na-translocating NADH-quinone reductase, subunit A (EC 1.6.5.-)
	plu1197	nqrB	Na-translocating NADH-quinone reductase, subunit B (EC 1.6.5.-)
	plu1198	nqrC	Na-translocating NADH-quinone reductase, subunit C (EC 1.6.5.-)
	plu1199	nqrD	Na-translocating NADH-quinone reductase, subunit D (EC 1.6.5.-)
	plu1200	nqrE	Na-translocating NADH-quinone reductase, subunit E (EC 1.6.5.-)
	plu1201	nqrF	Na-translocating NADH-quinone reductase, subunit F (EC 1.6.5.-)
Position: -136 Score: 3.7 Sequence: TTGAATATAATAAA Locus tag: plu4138 Name: dcuA Funciton: Anaerobic C4-dicarboxylate transporter
	plu4138	dcuA	Anaerobic C4-dicarboxylate transporter
Position: -206 Score: 3.5 Sequence: TGGATGCAAATCAT Locus tag: plu0209 Name: feoA Funciton: Ferrous iron transport protein A Locus tag: plu0208 Name: feoB Funciton: Ferrous iron transport protein B Locus tag: plu0207 Name: feoC Funciton: Ferrous iron-sensisng transcriptional regulator FeoC, FeoC family
	plu0209	feoA	Ferrous iron transport protein A
	plu0208	feoB	Ferrous iron transport protein B
	plu0207	feoC	Ferrous iron-sensisng transcriptional regulator FeoC, FeoC family
Position: -61 Score: 4 Sequence: Locus tag: plu4396 Name: aceB Funciton: Malate synthase (EC 2.3.3.9) Locus tag: plu4395 Name: aceA Funciton: Isocitrate lyase (EC 4.1.3.1) Locus tag: plu4394 Name: aceK Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
	plu4396	aceB	Malate synthase (EC 2.3.3.9)
	plu4395	aceA	Isocitrate lyase (EC 4.1.3.1)
	plu4394	aceK	Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Position: -134 Score: 4.5 Sequence: GTGATTAAGATCAA Locus tag: plu2496 Name: adhE Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
	plu2496	adhE	Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Position: -359 Score: 3.8 Sequence: ATGATTTATTTCAT Locus tag: plu0470 Name: malP Funciton: Maltodextrin phosphorylase (EC 2.4.1.1) Locus tag: plu0469 Name: malQ Funciton: 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)
	plu0470	malP	Maltodextrin phosphorylase (EC 2.4.1.1)
	plu0469	malQ	4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)
Position: -203 Score: 4.1 Sequence: TTGATCTCAAAAAA Locus tag: plu4774 Name: pfkA Funciton: 6-phosphofructokinase (EC 2.7.1.11)
	plu4774	pfkA	6-phosphofructokinase (EC 2.7.1.11)
Position: -239 Score: 4.1 Sequence: Locus tag: plu4124 Name: frdA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Locus tag: plu4125 Name: frdB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) Locus tag: plu4126 Name: frdC Funciton: Fumarate reductase subunit C Locus tag: plu4127 Name: frdD Funciton: Fumarate reductase subunit D
	plu4124	frdA	Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
	plu4125	frdB	Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
	plu4126	frdC	Fumarate reductase subunit C
	plu4127	frdD	Fumarate reductase subunit D
Position: -137 Score: 5.2 Sequence: TTGATTTTCATCAA Locus tag: plu2760 Name: purM Funciton: Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) Locus tag: plu2761 Name: purN Funciton: Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)
	plu2760	purM	Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)
	plu2761	purN	Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)
Position: -362 Score: 4.1 Sequence: GTGATATAAATCAC Position: -334 Score: 4.1 Sequence: CTGATCTATATCAC Locus tag: plu4009 Name: gltB Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) Locus tag: plu4010 Name: gltD Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
	plu4009	gltB	Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
	plu4010	gltD	Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
Position: 7 Score: 4.6 Sequence: TTGATTTAAAAAAA Locus tag: plu2432 Name: acnA Funciton: Aconitate hydratase (EC 4.2.1.3); 2-methylisocitrate dehydratase (EC 4.2.1.99)
	plu2432	acnA	Aconitate hydratase (EC 4.2.1.3); 2-methylisocitrate dehydratase (EC 4.2.1.99)
Position: -55 Score: 3.7 Sequence: TTTATTGTTATCAT Locus tag: plu1616 Name: ansB Funciton: L-asparaginase (EC 3.5.1.1)
	plu1616	ansB	L-asparaginase (EC 3.5.1.1)
Position: -33 Score: 3.9 Sequence: TTGTTGATTCTCAA Locus tag: plu0214 Name: pstS Funciton: Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) Locus tag: plu0215 Name: pstC Funciton: Phosphate transport system permease protein PstC (TC 3.A.1.7.1) Locus tag: plu0216 Name: pstA Funciton: Phosphate transport system permease protein PstA (TC 3.A.1.7.1) Locus tag: plu0217 Name: pstB Funciton: Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) Locus tag: plu0218 Name: phoU Funciton: Phosphate transport system regulatory protein PhoU
	plu0214	pstS	Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1)
	plu0215	pstC	Phosphate transport system permease protein PstC (TC 3.A.1.7.1)
	plu0216	pstA	Phosphate transport system permease protein PstA (TC 3.A.1.7.1)
	plu0217	pstB	Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1)
	plu0218	phoU	Phosphate transport system regulatory protein PhoU
Position: -249 Score: 4.8 Sequence: TTGTTAAATATCAA Locus tag: plu2801 Name: icdA Funciton: Isocitrate dehydrogenase (EC 1.1.1.42)
	plu2801	icdA	Isocitrate dehydrogenase (EC 1.1.1.42)
Position: -110 Score: 3.6 Sequence: TTGATGACAAAGAA Locus tag: plu1425 Name: gltA Funciton: Citrate synthase (EC 2.3.3.1)
	plu1425	gltA	Citrate synthase (EC 2.3.3.1)
Position: -56 Score: 3.8 Sequence: CCTATTTAAATCAA Locus tag: plu3138 Name: gltA Funciton: Citrate synthase (EC 2.3.3.1)
	plu3138	gltA	Citrate synthase (EC 2.3.3.1)
Position: -160 Score: 4.7 Sequence: TTGTTTCAGATCAA Locus tag: plu4499 Name: nrdD Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) Locus tag: plu4500 Name: nrdG Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
	plu4499	nrdD	Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
	plu4500	nrdG	Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Position: -150 Score: 4.2 Sequence: TTGATGTTGTTCAA Locus tag: plu2821 Name: ndh Funciton: NADH dehydrogenase (EC 1.6.99.3)
	plu2821	ndh	NADH dehydrogenase (EC 1.6.99.3)
Position: -267 Score: 4.1 Sequence: TTTATTTGCAACAA Position: -159 Score: 4.7 Sequence: TTTATTAAAATCAA Position: -84 Score: 4.9 Sequence: ATGATCTATATCAA Locus tag: plu1614 Name: focA Funciton: Formate efflux transporter (TC 2.A.44 family) Locus tag: plu1613 Name: pflB Funciton: Pyruvate formate-lyase (EC 2.3.1.54)
	plu1614	focA	Formate efflux transporter (TC 2.A.44 family)
	plu1613	pflB	Pyruvate formate-lyase (EC 2.3.1.54)
Position: -156 Score: 3.8 Sequence: TTGATGAAAAGCAT Locus tag: plu2810 Name: pepT Funciton: Tripeptide aminopeptidase (EC 3.4.11.4)
	plu2810	pepT	Tripeptide aminopeptidase (EC 3.4.11.4)
Position: -336 Score: 3.8 Sequence: TTGTGAGCTATCAA Locus tag: plu3875 Name: cyoA Funciton: Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) Locus tag: plu3876 Name: cyoB Funciton: Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) Locus tag: plu3877 Name: cyoC Funciton: Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) Locus tag: plu3878 Name: cyoD Funciton: Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) Locus tag: plu3879 Name: cyoE Funciton: Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB
	plu3875	cyoA	Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)
	plu3876	cyoB	Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)
	plu3877	cyoC	Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)
	plu3878	cyoD	Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)
	plu3879	cyoE	Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB
Position: -362 Score: 4.2 Sequence: TTGATTTGGATGAA Position: -198 Score: 3.8 Sequence: ATCACATATATCAA Locus tag: plu4137 Name: aspA Funciton: Aspartate ammonia-lyase (EC 4.3.1.1) Locus tag: plu4138 Name: dcuA Funciton: C4-dicarboxylate transporter DcuA
	plu4137	aspA	Aspartate ammonia-lyase (EC 4.3.1.1)
	plu4138	dcuA	C4-dicarboxylate transporter DcuA
Position: -244 Score: 3.9 Sequence: TTGACAGTGGTCAA Locus tag: plu1540 Name: moeA Funciton: Molybdopterin biosynthesis protein MoeA Locus tag: plu1539 Name: moeB Funciton: Molybdopterin biosynthesis protein MoeB
	plu1540	moeA	Molybdopterin biosynthesis protein MoeA
	plu1539	moeB	Molybdopterin biosynthesis protein MoeB
Position: -155 Score: 3.7 Sequence: TCGTTTTACATTAA Locus tag: plu1499 Name: moaA Funciton: Molybdenum cofactor biosynthesis protein MoaA Locus tag: plu1500 Name: moaC Funciton: Molybdenum cofactor biosynthesis protein MoaC Locus tag: plu1501 Name: moaD Funciton: Molybdenum cofactor biosynthesis protein MoaD Locus tag: plu1502 Name: moaE Funciton: Molybdenum cofactor biosynthesis protein MoaE
	plu1499	moaA	Molybdenum cofactor biosynthesis protein MoaA
	plu1500	moaC	Molybdenum cofactor biosynthesis protein MoaC
	plu1501	moaD	Molybdenum cofactor biosynthesis protein MoaD
	plu1502	moaE	Molybdenum cofactor biosynthesis protein MoaE
Position: -272 Score: 4 Sequence: ATGATGAATGACAA Locus tag: plu0122 Name: gdhA Funciton: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
	plu0122	gdhA	NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
Position: -346 Score: 3.6 Sequence: TTATGTCAAATCAA Locus tag: plu0075 Name: sodA Funciton: Manganese superoxide dismutase (EC 1.15.1.1)
	plu0075	sodA	Manganese superoxide dismutase (EC 1.15.1.1)
Position: -282 Score: 4.9 Sequence: TTGATGTACGTCAA Locus tag: plu0562 Name: arcA Funciton: Aerobic respiration control protein arcA
	plu0562	arcA	Aerobic respiration control protein arcA
Position: -253 Score: 3.8 Sequence: TTATTTTTGGTCAA Locus tag: plu4378 Name: ubiC Funciton: Chorismate--pyruvate lyase (EC 4.1.3.40) Locus tag: plu4377 Name: ubiA Funciton: 4-hydroxybenzoate polyprenyltransferase (EC 2.5.1.-)
	plu4378	ubiC	Chorismate--pyruvate lyase (EC 4.1.3.40)
	plu4377	ubiA	4-hydroxybenzoate polyprenyltransferase (EC 2.5.1.-)
Position: -35 Score: 3.4 Sequence: TTGAAGGATATGAA Locus tag: plu2179 Name: fnr Funciton: Fumarate and nitrate reduction regulatory protein
	plu2179	fnr	Fumarate and nitrate reduction regulatory protein
Position: -160 Score: 5 Sequence: TTGATTTGGATCAA Locus tag: plu2478 Name: ompW Funciton: outer membrane protein W; colicin S4 receptor; putative transporter
	plu2478	ompW	outer membrane protein W; colicin S4 receptor; putative transporter

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of Fnr in Photorhabdus luminescens subsp. laumondii TTO1

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --