Regulog NagR - Lactobacillaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | N-acetylglucosamine utilization |
| Effector: | N-acetylglucosamine-6-phosphate |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By TF family - GntR/Others
- By effector - N-acetylglucosamine-6-phosphate
- By pathway - N-acetylglucosamine utilization
| Genes | Function | |||||||||||||||
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| CRON 1. | ||||||||||||||||
| nagA |
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Lactobacillus brevis ATCC 367 Site: position = -66 score = 5.33704 sequence = TTTCTGGTCTATACCGATTA Gene: LVIS_0539: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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Lactobacillus casei ATCC 334 Site: position = -73 score = 5.2667 sequence = ATCTTGGTCTATACCAGTTA Gene: LSEI_1808: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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Lactobacillus plantarum WCFS1 Site: position = -55 score = 5.24293 sequence = AGTTTGGTCTATACCGATTA Gene: lp_0562: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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Lactobacillus rhamnosus GG Site: position = -66 score = 4.53742 sequence = AGTCTGGTCTATACCGGTTA Gene: LGG_01862: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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Lactobacillus sakei subsp. sakei 23K Site: position = -56 score = 5.69421 sequence = TTTTTGGTCTATACCATTTA Gene: LSA1588: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -146 score = 5.48102 sequence = GTTTTGGTCTATACCAATTA Site: position = -93 score = 5.24587 sequence = TTCATGGTCTATACCATTTA Gene: LSL_1466: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -82 score = 5.83021 sequence = TAATAGGTCTAGACCAATTA Gene: LEUM_0425: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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Oenococcus oeni PSU-1 Site: position = -32 score = 4.41244 sequence = TAATTGGGCTATACCAAACC Gene: OEOE_1728: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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Pediococcus pentosaceus ATCC 25745 Site: position = -57 score = 5.63596 sequence = TTTTTGGTCTATACCGATAT Gene: PEPE_1528: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
| nagR |
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Lactobacillus acidophilus NCFM Site: position = -66 score = 4.3596 sequence = AATGAAATCTAGACCAATTT Gene: LBA0516: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
Gene: LVIS_0540: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
Gene: LSEI_1807: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
Gene: LBUL_0399: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
Gene: LAF_0242: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
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Lactobacillus helveticus DPC 4571 Site: position = -35 score = 4.53545 sequence = AATGCAATCTAGACCAATTT Gene: lhv_0534: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
Gene: LJ1739: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
Gene: lp_0563: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
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Lactobacillus reuteri JCM 1112 Site: position = -82 score = 4.17949 sequence = AAATTGGTCTAGATTTTTGG Gene: LAR_0271: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
Gene: LGG_01861: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
Gene: LSA1587: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
Gene: LSL_1263: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
Gene: LEUM_0426: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
Gene: OEOE_1727: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
Gene: PEPE_1527: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
| CRON 2. | ||||||||||||||||
| nagE |
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*2
Lactobacillus plantarum WCFS1 Site: position = -100 score = 4.18545 sequence = ACATTGGTCTATACACTTAG Gene: lp_2531: N-acetylglucosamine and glucose PTS, EIICBA Site: position = -97 score = 4.97408 sequence = CCAATGGACTATACCAATAA Gene: lp_2969: N-acetylglucosamine and glucose PTS, EIICBA |
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Lactobacillus sakei subsp. sakei 23K Site: position = -150 score = 5.32883 sequence = TATACGGTATAGACCAAAAT Site: position = -95 score = 5.06561 sequence = TTAAAGGTCTATACCAACTA Gene: LSA0060: N-acetylglucosamine and glucose PTS, EIICBA |
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Pediococcus pentosaceus ATCC 25745 Site: position = -144 score = 5.77225 sequence = TAATAGGTATATACCAATTT Site: position = -100 score = 4.81875 sequence = AAAGCGGATTATACCAATAA Gene: PEPE_1816: N-acetylglucosamine and glucose PTS, EIICBA |
N-acetylglucosamine and glucose PTS, EIICBA |
| CRON 3. | ||||||||||||||||
| celB |
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Lactobacillus acidophilus NCFM Site: position = -60 score = 4.87094 sequence = ATAGAGGTATATACCGAATT Gene: LBA0491: PTS system, cellobiose-specific IIC component (EC 2.7.1.69) |
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Lactobacillus johnsonii NCC 533 Site: position = -64 score = 5.77225 sequence = AAATAGGTATATACCAATTA Gene: LJ0531: PTS system, cellobiose-specific IIC component (EC 2.7.1.69) |
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PTS system, cellobiose-specific IIC component (EC 2.7.1.69) |
| LBA0492 |
Gene: LBA0492: hypothetical protein |
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Gene: LJ0532: hypothetical protein |
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hypothetical protein |
| CRON 4. | ||||||||||||||||
| PF00248 |
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Lactobacillus acidophilus NCFM Site: position = -102 score = 5.43176 sequence = TTAATGGTCTAGTCCATTAT Site: position = -82 score = 5.55983 sequence = AAAATGGAATAGACCATTTT Gene: LBA1947: Oxidoreductase, aldo/keto reductase family |
Gene: LVIS_1188: Oxidoreductase, aldo/keto reductase family |
Gene: LSEI_0641: Oxidoreductase, aldo/keto reductase family |
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Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -166 score = 5.66316 sequence = ATATTGGTATAGTCCATTTT Site: position = -127 score = 4.45943 sequence = GTCAAGGTCTAGACCGATAA Gene: LBUL_2009: Oxidoreductase, aldo/keto reductase family |
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Lactobacillus helveticus DPC 4571 Site: position = -103 score = 5.25592 sequence = TTACTGGTCTAGTCCATTAT Site: position = -83 score = 5.55983 sequence = AAAATGGAATAGACCATTTT Gene: lhv_2076: Oxidoreductase, aldo/keto reductase family |
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Lactobacillus johnsonii NCC 533 Site: position = -109 score = 5.3589 sequence = TCATTGGTCTAGTCCATTAT Site: position = -81 score = 5.42404 sequence = AAATTGGTCTAGTCAAATTA Gene: LJ1822: Oxidoreductase, aldo/keto reductase family |
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Gene: LAR_1240: Oxidoreductase, aldo/keto reductase family |
Gene: LGG_00615: Oxidoreductase, aldo/keto reductase family |
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Oxidoreductase, aldo/keto reductase family |
| CRON 5. | ||||||||||||||||
| celB2 |
Gene: LBA1369: PTS system, cellobiose-specific IIC component (EC 2.7.1.69) |
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Gene: LJ0733: PTS system, cellobiose-specific IIC component (EC 2.7.1.69) |
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*
Pediococcus pentosaceus ATCC 25745 Site: position = -165 score = 5.60455 sequence = TAATTGGTATATTCCATTAT Gene: PEPE_0023: PTS system, cellobiose-specific IIC component (EC 2.7.1.69) |
PTS system, cellobiose-specific IIC component (EC 2.7.1.69) |
| CRON 6. | ||||||||||||||||
| nagA2 |
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Lactobacillus acidophilus NCFM Site: position = -80 score = 5.20949 sequence = AAACTGGTATTGACCAATTT Gene: LBA0144: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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Gene: LBUL_0171: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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Gene: lhv_0514: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
Gene: LJ0118: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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Gene: LGG_00334: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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Gene: PEPE_1754: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
| CRON 7. | ||||||||||||||||
| LBA0143 |
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Lactobacillus acidophilus NCFM Site: position = -95 score = 5.20949 sequence = AAATTGGTCAATACCAGTTT Gene: LBA0143: Maltodextrin glucosidase (EC 3.2.1.20) |
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Gene: LSEI_2769: Maltodextrin glucosidase (EC 3.2.1.20) |
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Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -85 score = 4.61157 sequence = AAACTGGTATAGGCTATTTT Gene: LBUL_0170: Maltodextrin glucosidase (EC 3.2.1.20) |
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Gene: lhv_0152: Maltodextrin glucosidase (EC 3.2.1.20) |
Gene: LJ0115: Maltodextrin glucosidase (EC 3.2.1.20) |
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Gene: LGG_02762: Maltodextrin glucosidase (EC 3.2.1.20) |
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Maltodextrin glucosidase (EC 3.2.1.20) |
| CRON 8. | ||||||||||||||||
| nagB |
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Lactobacillus acidophilus NCFM Site: position = -57 score = 5.55983 sequence = AAAATGGTCTATTCCATTTT Site: position = -37 score = 5.43176 sequence = ATAATGGACTAGACCATTAA Gene: LBA1948: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
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Lactobacillus brevis ATCC 367 Site: position = -58 score = 5.44973 sequence = AAATCGGTCTAGATCATTTA Site: position = -38 score = 4.97123 sequence = CAATTGGACTATACCATTAG Gene: LVIS_0689: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
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Lactobacillus casei ATCC 334 Site: position = -77 score = 5.01647 sequence = ATTACGGTATAGACCACTAT Site: position = -34 score = 5.05285 sequence = ACATTGGACTAGACCAGATA Gene: LSEI_2889: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
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Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -92 score = 4.45943 sequence = TTATCGGTCTAGACCTTGAC Site: position = -53 score = 5.66316 sequence = AAAATGGACTATACCAATAT Gene: LBUL_2010: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
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Lactobacillus helveticus DPC 4571 Site: position = -54 score = 5.55983 sequence = AAAATGGTCTATTCCATTTT Site: position = -34 score = 5.25592 sequence = ATAATGGACTAGACCAGTAA Gene: lhv_2077: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
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Lactobacillus johnsonii NCC 533 Site: position = -65 score = 5.42404 sequence = TAATTTGACTAGACCAATTT Site: position = -37 score = 5.3589 sequence = ATAATGGACTAGACCAATGA Gene: LJ1823: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
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Lactobacillus plantarum WCFS1 Site: position = -60 score = 5.43108 sequence = ATTTTAGTCTAGACCAATAT Site: position = -39 score = 4.80394 sequence = CAATTGGACTATACCAAACA Gene: lp_0226: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
Gene: LAR_0980: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
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Lactobacillus rhamnosus GG Site: position = -78 score = 5.12678 sequence = AATTAGGTATAGACCATTGT Site: position = -35 score = 5.30262 sequence = ATATTGGACTAGACCAGATA Gene: LGG_02913: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
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Lactobacillus sakei subsp. sakei 23K Site: position = -55 score = 5.22459 sequence = TAATTGGACTATACCAATGG Gene: LSA0417: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
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Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -92 score = 5.24587 sequence = TAAATGGTATAGACCATGAA Site: position = -39 score = 5.48102 sequence = TAATTGGTATAGACCAAAAC Gene: LSL_1465: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
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Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -50 score = 5.42718 sequence = ATATTGGTATAGACCAAAAC Site: position = -35 score = 5.82979 sequence = AAAACGGTATAGACCAATTT Gene: LEUM_0354: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
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Oenococcus oeni PSU-1 Site: position = -84 score = 4.18963 sequence = CAAAAAAACTATACCAATTT Gene: OEOE_0644: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
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Pediococcus pentosaceus ATCC 25745 Site: position = -60 score = 5.41468 sequence = ATTTTGGTTTAGACCATTTT Site: position = -39 score = 5.59676 sequence = TAATTGGACTATACCAAAAA Gene: PEPE_0335: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
| pgi |
Gene: LBA0752: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
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Lactobacillus brevis ATCC 367 Site: position = -82 score = 5.08972 sequence = AATGTGGACTAGACCATTTA Site: position = -43 score = 4.46461 sequence = ATAATGGACTAGTCAATAAT Gene: LVIS_1312: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: LSEI_1126: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: LBUL_0625: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
2
Lactobacillus fermentum IFO 3956 Gene: LAF_1686: Glucose-6-phosphate isomerase (EC 5.3.1.9) Gene: LAF_0411: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: lhv_0795: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: LJ0924: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: lp_2502: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: LAR_0415: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: LGG_01085: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: LSA1179: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: LSL_0464: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: LEUM_0355: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
2
Oenococcus oeni PSU-1 Gene: OEOE_1524: Glucose-6-phosphate isomerase (EC 5.3.1.9) Gene: OEOE_0636: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: PEPE_1350: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Glucose-6-phosphate isomerase (EC 5.3.1.9) |
| glmS |
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Lactobacillus acidophilus NCFM Site: position = -52 score = 4.38699 sequence = AAAATAAACTAGTCCATTAA Site: position = -28 score = 4.60665 sequence = ATATTGAACTAGACCAAAGG Gene: LBA0462: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
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Lactobacillus brevis ATCC 367 Site: position = -106 score = 5.28448 sequence = ATTTCAGTCTATACCAATTT Gene: LVIS_0687: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
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Lactobacillus casei ATCC 334 Site: position = -159 score = 5.27046 sequence = AAATTAATATAGACCAATAT Site: position = -48 score = 5.17893 sequence = AAATCTGTCTAAACCAATTT Gene: LSEI_1019: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
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Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -29 score = 4.68024 sequence = AAATTGAACTAGACCAAAGG Gene: LBUL_0440: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
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Lactobacillus fermentum IFO 3956 Site: position = -47 score = 4.87029 sequence = GAATTTATCTATACCAATTT Gene: LAF_0382: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
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Lactobacillus helveticus DPC 4571 Site: position = -131 score = 4.87012 sequence = AAAATTGATTATACCAATTT Gene: lhv_0491: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
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Lactobacillus johnsonii NCC 533 Site: position = -130 score = 5.14576 sequence = CTTTTGATATAGACCAATTA Site: position = -29 score = 4.44471 sequence = TAAATGAACTATACCAAAGG Gene: LJ1581: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
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Lactobacillus plantarum WCFS1 Site: position = -213 score = 4.1463 sequence = AGGTTAGACTAGACCAATTG Gene: lp_0822: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
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Lactobacillus reuteri JCM 1112 Site: position = -134 score = 4.43599 sequence = TAAATCATATAGACCAATCT Site: position = -43 score = 4.39827 sequence = CTAGTTATCTATACCAATTT Gene: LAR_0405: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
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Lactobacillus rhamnosus GG Site: position = -47 score = 4.82617 sequence = AAACCTGTCTAAACCAATTT Gene: LGG_00983: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
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Lactobacillus sakei subsp. sakei 23K Site: position = -137 score = 4.02561 sequence = ACTCAGGGCTATACCAATGT Site: position = -114 score = 5.36255 sequence = TAATTGAAATATACCAATAA Gene: LSA1355: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
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Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -58 score = 5.10512 sequence = ATCAAGGTCTATACCAATTT Gene: LSL_1627: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
Gene: LEUM_0684: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
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Oenococcus oeni PSU-1 Site: position = -113 score = 4.99244 sequence = TTAATGGCCTATACCAATGT Gene: OEOE_0635: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
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Pediococcus pentosaceus ATCC 25745 Site: position = -124 score = 5.01892 sequence = CATTTGATATATACCGATTT Site: position = -58 score = 4.01329 sequence = ATCGTTCTATATACCAATTT Gene: PEPE_0478: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |