Profile of regulator NagR in Lactobacillaceae
Properties
| Regulator family: |
GntR/Others |
| Regulation mode: |
|
| Biological process: |
N-acetylglucosamine utilization |
| Effector: |
N-acetylglucosamine-6-phosphate |
| Regulog: |
NagR - Lactobacillaceae |
Member of regulog collections
Transcription factor binding sites
|
Locus Tag |
Name |
Position |
Score |
Sequence |
|
Lactobacillus acidophilus NCFM
|
|
LBA0516 |
nagR |
-66 |
4.4 |
AATGAAATCTAGACCAATTT |
|
LBA0462 |
glmS |
-52 |
4.4 |
AAAATAAACTAGTCCATTAA |
|
LBA0462 |
glmS |
-28 |
4.6 |
ATATTGAACTAGACCAAAGG |
|
LBA1948 |
nagB |
-57 |
5.6 |
AAAATGGTCTATTCCATTTT |
|
LBA1948 |
nagB |
-37 |
5.4 |
ATAATGGACTAGACCATTAA |
|
LBA0491 |
celB |
-60 |
4.9 |
ATAGAGGTATATACCGAATT |
|
LBA1947 |
PF00248 |
-102 |
5.4 |
TTAATGGTCTAGTCCATTAT |
|
LBA1947 |
PF00248 |
-82 |
5.6 |
AAAATGGAATAGACCATTTT |
|
LBA0143 |
LBA0143 |
-95 |
5.2 |
AAATTGGTCAATACCAGTTT |
|
LBA0144 |
nagA2 |
-80 |
5.2 |
AAACTGGTATTGACCAATTT |
|
Lactobacillus brevis ATCC 367
|
|
LVIS_0539 |
nagA |
-66 |
5.3 |
TTTCTGGTCTATACCGATTA |
|
LVIS_1312 |
pgi |
-82 |
5.1 |
AATGTGGACTAGACCATTTA |
|
LVIS_1312 |
pgi |
-43 |
4.5 |
ATAATGGACTAGTCAATAAT |
|
LVIS_0687 |
glmS |
-106 |
5.3 |
ATTTCAGTCTATACCAATTT |
|
LVIS_0689 |
nagB |
-58 |
5.4 |
AAATCGGTCTAGATCATTTA |
|
LVIS_0689 |
nagB |
-38 |
5 |
CAATTGGACTATACCATTAG |
|
Lactobacillus casei ATCC 334
|
|
LSEI_1808 |
nagA |
-73 |
5.3 |
ATCTTGGTCTATACCAGTTA |
|
LSEI_1019 |
glmS |
-159 |
5.3 |
AAATTAATATAGACCAATAT |
|
LSEI_1019 |
glmS |
-48 |
5.2 |
AAATCTGTCTAAACCAATTT |
|
LSEI_2889 |
nagB |
-77 |
5 |
ATTACGGTATAGACCACTAT |
|
LSEI_2889 |
nagB |
-34 |
5.1 |
ACATTGGACTAGACCAGATA |
|
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
|
|
LBUL_2010 |
nagB |
-92 |
4.5 |
TTATCGGTCTAGACCTTGAC |
|
LBUL_2010 |
nagB |
-53 |
5.7 |
AAAATGGACTATACCAATAT |
|
LBUL_0440 |
glmS |
-29 |
4.7 |
AAATTGAACTAGACCAAAGG |
|
LBUL_2009 |
PF00248 |
-166 |
5.7 |
ATATTGGTATAGTCCATTTT |
|
LBUL_2009 |
PF00248 |
-127 |
4.5 |
GTCAAGGTCTAGACCGATAA |
|
LBUL_0170 |
LBA0143 |
-85 |
4.6 |
AAACTGGTATAGGCTATTTT |
|
Lactobacillus fermentum IFO 3956
|
|
LAF_0382 |
glmS |
-47 |
4.9 |
GAATTTATCTATACCAATTT |
|
Lactobacillus helveticus DPC 4571
|
|
lhv_0534 |
nagR |
-35 |
4.5 |
AATGCAATCTAGACCAATTT |
|
lhv_2077 |
nagB |
-54 |
5.6 |
AAAATGGTCTATTCCATTTT |
|
lhv_2077 |
nagB |
-34 |
5.3 |
ATAATGGACTAGACCAGTAA |
|
lhv_0491 |
glmS |
-131 |
4.9 |
AAAATTGATTATACCAATTT |
|
lhv_2076 |
PF00248 |
-103 |
5.3 |
TTACTGGTCTAGTCCATTAT |
|
lhv_2076 |
PF00248 |
-83 |
5.6 |
AAAATGGAATAGACCATTTT |
|
Lactobacillus johnsonii NCC 533
|
|
LJ1581 |
glmS |
-130 |
5.1 |
CTTTTGATATAGACCAATTA |
|
LJ1581 |
glmS |
-29 |
4.4 |
TAAATGAACTATACCAAAGG |
|
LJ0531 |
null |
-64 |
5.8 |
AAATAGGTATATACCAATTA |
|
LJ1822 |
PF00248 |
-109 |
5.4 |
TCATTGGTCTAGTCCATTAT |
|
LJ1822 |
PF00248 |
-81 |
5.4 |
AAATTGGTCTAGTCAAATTA |
|
LJ1823 |
nagB |
-65 |
5.4 |
TAATTTGACTAGACCAATTT |
|
LJ1823 |
nagB |
-37 |
5.4 |
ATAATGGACTAGACCAATGA |
|
Lactobacillus plantarum WCFS1
|
|
lp_0562 |
nagA |
-55 |
5.2 |
AGTTTGGTCTATACCGATTA |
|
lp_0822 |
glmS |
-213 |
4.1 |
AGGTTAGACTAGACCAATTG |
|
lp_2531 |
nagE |
-100 |
4.2 |
ACATTGGTCTATACACTTAG |
|
lp_2969 |
nagE |
-97 |
5 |
CCAATGGACTATACCAATAA |
|
lp_0226 |
nagB |
-60 |
5.4 |
ATTTTAGTCTAGACCAATAT |
|
lp_0226 |
nagB |
-39 |
4.8 |
CAATTGGACTATACCAAACA |
|
Lactobacillus reuteri JCM 1112
|
|
LAR_0271 |
nagR |
-82 |
4.2 |
AAATTGGTCTAGATTTTTGG |
|
LAR_0405 |
glmS |
-134 |
4.4 |
TAAATCATATAGACCAATCT |
|
LAR_0405 |
glmS |
-43 |
4.4 |
CTAGTTATCTATACCAATTT |
|
Lactobacillus rhamnosus GG
|
|
LGG_01862 |
nagA |
-66 |
4.5 |
AGTCTGGTCTATACCGGTTA |
|
LGG_02913 |
nagB |
-78 |
5.1 |
AATTAGGTATAGACCATTGT |
|
LGG_02913 |
nagB |
-35 |
5.3 |
ATATTGGACTAGACCAGATA |
|
LGG_00983 |
glmS |
-47 |
4.8 |
AAACCTGTCTAAACCAATTT |
|
Lactobacillus sakei subsp. sakei 23K
|
|
LSA1588 |
nagA |
-56 |
5.7 |
TTTTTGGTCTATACCATTTA |
|
LSA1355 |
glmS |
-137 |
4 |
ACTCAGGGCTATACCAATGT |
|
LSA1355 |
glmS |
-114 |
5.4 |
TAATTGAAATATACCAATAA |
|
LSA0060 |
nagE |
-150 |
5.3 |
TATACGGTATAGACCAAAAT |
|
LSA0060 |
nagE |
-95 |
5.1 |
TTAAAGGTCTATACCAACTA |
|
LSA0417 |
nagB |
-55 |
5.2 |
TAATTGGACTATACCAATGG |
|
Lactobacillus salivarius subsp. salivarius UCC118
|
|
LSL_1466 |
nagA |
-146 |
5.5 |
GTTTTGGTCTATACCAATTA |
|
LSL_1466 |
nagA |
-93 |
5.2 |
TTCATGGTCTATACCATTTA |
|
LSL_1627 |
glmS |
-58 |
5.1 |
ATCAAGGTCTATACCAATTT |
|
LSL_1465 |
nagB |
-92 |
5.2 |
TAAATGGTATAGACCATGAA |
|
LSL_1465 |
nagB |
-39 |
5.5 |
TAATTGGTATAGACCAAAAC |
|
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
|
|
LEUM_0425 |
nagA |
-82 |
5.8 |
TAATAGGTCTAGACCAATTA |
|
LEUM_0354 |
nagB |
-50 |
5.4 |
ATATTGGTATAGACCAAAAC |
|
LEUM_0354 |
nagB |
-35 |
5.8 |
AAAACGGTATAGACCAATTT |
|
Oenococcus oeni PSU-1
|
|
OEOE_1728 |
nagA |
-32 |
4.4 |
TAATTGGGCTATACCAAACC |
|
OEOE_0644 |
nagB |
-84 |
4.2 |
CAAAAAAACTATACCAATTT |
|
OEOE_0635 |
glmS |
-113 |
5 |
TTAATGGCCTATACCAATGT |
|
Pediococcus pentosaceus ATCC 25745
|
|
PEPE_1528 |
nagA |
-57 |
5.6 |
TTTTTGGTCTATACCGATAT |
|
PEPE_0478 |
glmS |
-124 |
5 |
CATTTGATATATACCGATTT |
|
PEPE_0478 |
glmS |
-58 |
4 |
ATCGTTCTATATACCAATTT |
|
PEPE_0335 |
nagB |
-60 |
5.4 |
ATTTTGGTTTAGACCATTTT |
|
PEPE_0335 |
nagB |
-39 |
5.6 |
TAATTGGACTATACCAAAAA |
|
PEPE_1816 |
nagE |
-144 |
5.8 |
TAATAGGTATATACCAATTT |
|
PEPE_1816 |
nagE |
-100 |
4.8 |
AAAGCGGATTATACCAATAA |
|
PEPE_0023 |
celB2 |
-165 |
5.6 |
TAATTGGTATATTCCATTAT |
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