Regulog SdhR - Various betaproteobacteria
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Tricarboxylic acid cycle |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Various betaproteobacteria
- By TF family - GntR/Others
- By pathway - Tricarboxylic acid cycle
| Genome | Genes | Operons |
|---|---|---|
| Methylobacillus flagellatus KT | ||
| Methylophilales bacterium HTCC2181 | 16 | 2 |
| Methylotenera mobilis JLW8 | 18 | 2 |
| Nitrosomonas europaea ATCC 19718 | ||
| Nitrosospira multiformis ATCC 25196 | ||
| Thiobacillus denitrificans | ||
| Azoarcus sp. EbN1 | 14 | 4 |
| Dechloromonas aromatica RCB | 16 | 5 |
| Thauera sp. MZ1T | 15 | 5 |
| Chromobacterium violaceum ATCC 12472 | 15 | 2 |
| Laribacter hongkongensis HLHK9 | 2 | 2 |
| Neisseria meningitidis MC58 |
| Genes | Function | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||
| sdhR |
|
*
Methylophilales bacterium HTCC2181 Site: position = -201 score = 5.63336 sequence = TATTAAGTCTTATATAAGAGTAAAAA Site: position = -68 score = 5.54061 sequence = TTTTAACTCTTATATAAGATATAGAA Gene: MB2181_04040: Transcriptional regulator of TCA cycle, GntR family |
*
Methylotenera mobilis JLW8 Site: position = -115 score = 7.36725 sequence = TCTTATGTCTTATATAAGATATAAAA Gene: Mmol_0754: Transcriptional regulator of TCA cycle, GntR family |
|
|
|
*
Azoarcus sp. EbN1 Site: position = -68 score = 7.05826 sequence = TCTGGTGTCTTATATAAGACATGAGA Gene: ebA6693: Transcriptional regulator of TCA cycle, GntR family |
*
Dechloromonas aromatica RCB Site: position = -66 score = 6.98049 sequence = TCATATGTCTTATATAAGACAACTTT Gene: Daro_2866: Transcriptional regulator of TCA cycle, GntR family |
*
Thauera sp. MZ1T Site: position = -68 score = 7.34179 sequence = TCTTATATCTTATATAAGACACAAGA Gene: Tmz1t_2551: Transcriptional regulator of TCA cycle, GntR family |
*
Chromobacterium violaceum ATCC 12472 Site: position = 77 score = 6.99689 sequence = TCTTATGTCTTATATAAGACTTATCT Gene: CV1063: Transcriptional regulator of TCA cycle, GntR family |
*
Laribacter hongkongensis HLHK9 Site: position = -62 score = 6.1722 sequence = TTTTATATCTTATATAAGACATGCAT Gene: LHK_02422: Transcriptional regulator of TCA cycle, GntR family |
|
Transcriptional regulator of TCA cycle, GntR family |
| CV1064 |
|
|
|
|
|
|
|
|
|
Gene: CV1064: hypothetical protein |
|
|
hypothetical protein |
| sdhC |
|
Gene: MB2181_04030: Succinate dehydrogenase cytochrome b-556 subunit |
Gene: Mmol_0757: Succinate dehydrogenase cytochrome b-556 subunit |
Gene: NE1046: Succinate dehydrogenase cytochrome b-556 subunit |
Gene: Nmul_A0863: Succinate dehydrogenase cytochrome b-556 subunit |
Gene: Tbd_1182: Succinate dehydrogenase cytochrome b-556 subunit |
2
Azoarcus sp. EbN1 Gene: ebD20: Succinate dehydrogenase cytochrome b-556 subunit Gene: ebB154: Succinate dehydrogenase cytochrome b-556 subunit |
Gene: Daro_2865: Succinate dehydrogenase cytochrome b-556 subunit |
2
Thauera sp. MZ1T Gene: Tmz1t_2550: Succinate dehydrogenase cytochrome b-556 subunit Gene: Tmz1t_0123: Succinate dehydrogenase cytochrome b-556 subunit |
Gene: CV1065: Succinate dehydrogenase cytochrome b-556 subunit |
Gene: LHK_02421: Succinate dehydrogenase cytochrome b-556 subunit |
Gene: NMB0948: Succinate dehydrogenase cytochrome b-556 subunit |
Succinate dehydrogenase cytochrome b-556 subunit |
| sdhD |
|
Gene: MB2181_04025: Succinate dehydrogenase, hydrophobic subunit, cytochrome b556 |
Gene: Mmol_0758: Succinate dehydrogenase, hydrophobic subunit, cytochrome b556 |
Gene: NE1047: Succinate dehydrogenase, hydrophobic subunit, cytochrome b556 |
Gene: Nmul_A0862: Succinate dehydrogenase, hydrophobic subunit, cytochrome b556 |
Gene: Tbd_1183: Succinate dehydrogenase, hydrophobic subunit, cytochrome b556 |
2
Azoarcus sp. EbN1 Gene: ebB235: Succinate dehydrogenase, hydrophobic subunit, cytochrome b556 Gene: ebA4576: Succinate dehydrogenase, hydrophobic subunit, cytochrome b556 |
Gene: Daro_2864: Succinate dehydrogenase, hydrophobic subunit, cytochrome b556 |
2
Thauera sp. MZ1T Gene: Tmz1t_2549: Succinate dehydrogenase, hydrophobic subunit, cytochrome b556 Gene: Tmz1t_0124: Succinate dehydrogenase, hydrophobic subunit, cytochrome b556 |
Gene: CV1066: Succinate dehydrogenase, hydrophobic subunit, cytochrome b556 |
Gene: LHK_02420: Succinate dehydrogenase, hydrophobic subunit, cytochrome b556 |
Gene: NMB0949: Succinate dehydrogenase, hydrophobic subunit, cytochrome b556 |
Succinate dehydrogenase, hydrophobic subunit, cytochrome b556 |
| sdhA |
|
Gene: MB2181_04020: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Gene: Mmol_0759: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Gene: NE1048: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Gene: Nmul_A0861: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Gene: Tbd_1184: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Gene: ebA6690: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Gene: Daro_2863: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Gene: Tmz1t_2548: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Gene: CV1067: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Gene: LHK_02419: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Gene: NMB0950: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) |
| sdhB |
|
Gene: MB2181_04015: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: Mmol_0760: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: NE2371: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: Nmul_A0860: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: Tbd_1185: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
2
Azoarcus sp. EbN1 Gene: ebA6689: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) Gene: ebA4578: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: Daro_2862: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
2
Thauera sp. MZ1T Gene: Tmz1t_2547: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) Gene: Tmz1t_0125: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: CV1068: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: LHK_02418: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: NMB0951: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
| COG2938 |
|
Gene: MB2181_04010: succinate dehydrogenase iron-sulfur subunit |
Gene: Mmol_0761: succinate dehydrogenase iron-sulfur subunit |
Gene: NE2372: succinate dehydrogenase iron-sulfur subunit |
Gene: Nmul_A0859: succinate dehydrogenase iron-sulfur subunit |
Gene: Tbd_1186: succinate dehydrogenase iron-sulfur subunit |
Gene: ebA6688: succinate dehydrogenase iron-sulfur subunit |
Gene: Daro_2861: succinate dehydrogenase iron-sulfur subunit |
Gene: Tmz1t_2546: succinate dehydrogenase iron-sulfur subunit |
Gene: CV1069: succinate dehydrogenase iron-sulfur subunit |
|
Gene: NMB0952: succinate dehydrogenase iron-sulfur subunit |
succinate dehydrogenase iron-sulfur subunit |
| gltA |
Gene: Mfla_0061: Citrate synthase (si) (EC 2.3.3.1) |
Gene: MB2181_00655: Citrate synthase (si) (EC 2.3.3.1) |
Gene: Mmol_0197: Citrate synthase (si) (EC 2.3.3.1) |
Gene: NE2373: Citrate synthase (si) (EC 2.3.3.1) |
Gene: Nmul_A0858: Citrate synthase (si) (EC 2.3.3.1) |
Gene: Tbd_1187: Citrate synthase (si) (EC 2.3.3.1) |
Gene: ebA6687: Citrate synthase (si) (EC 2.3.3.1) |
Gene: Daro_2860: Citrate synthase (si) (EC 2.3.3.1) |
Gene: Tmz1t_2545: Citrate synthase (si) (EC 2.3.3.1) |
Gene: CV1070: Citrate synthase (si) (EC 2.3.3.1) |
Gene: LHK_02417: Citrate synthase (si) (EC 2.3.3.1) |
Gene: NMB0954: Citrate synthase (si) (EC 2.3.3.1) |
Citrate synthase (si) (EC 2.3.3.1) |
| odhA |
|
|
|
Gene: NE2374: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) |
Gene: Nmul_A0857: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) |
Gene: Tbd_1188: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) |
Gene: ebA6685: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) |
Gene: Daro_2859: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) |
Gene: Tmz1t_2544: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) |
Gene: CV1071: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) |
Gene: LHK_02416: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) |
Gene: NMB0955: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) |
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) |
| sucB |
|
|
|
Gene: NE2375: Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) |
Gene: Nmul_A0856: Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) |
Gene: Tbd_1189: Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) |
Gene: ebA6684: Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) |
Gene: Daro_2858: Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) |
Gene: Tmz1t_2543: Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) |
Gene: CV1072: Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) |
Gene: LHK_02415: Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) |
Gene: NMB0956: Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) |
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) |
| CV1073 |
|
|
|
|
|
|
|
|
|
Gene: CV1073: hypothetical protein |
|
|
hypothetical protein |
| lpdA |
|
|
|
Gene: NE2319: Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4) |
Gene: Nmul_A0855: Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4) |
|
Gene: ebA6683: Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4) |
Gene: Daro_2857: Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4) |
Gene: Tmz1t_2542: Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4) |
Gene: CV1074: Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4) |
Gene: LHK_02413: Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4) |
Gene: NMB0957: Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4) |
Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4) |
| sucC |
Gene: Mfla_1889: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) |
Gene: MB2181_05725: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) |
Gene: Mmol_0676: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) |
Gene: NE1810: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) |
Gene: Nmul_A1079: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) |
Gene: Tbd_0805: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) |
|
|
|
Gene: CV1075: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) |
Gene: LHK_02412: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) |
Gene: NMB0959: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) |
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) |
| sucD |
Gene: Mfla_1888: Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) |
Gene: MB2181_05730: Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) |
Gene: Mmol_0677: Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) |
|
|
Gene: Tbd_0806: Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) |
|
|
|
Gene: CV1076: Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) |
Gene: LHK_02411: Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) |
Gene: NMB0960: Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) |
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) |
| Mmol_0755 |
|
|
Gene: Mmol_0755: hypothetical protein |
|
|
|
|
|
|
|
|
|
hypothetical protein |
| MB2181_04035 |
|
Gene: MB2181_04035: Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)) |
Gene: Mmol_0756: Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)) |
|
|
Gene: Tbd_1181: Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)) |
|
|
|
|
|
|
Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)) |
| citE |
|
Gene: MB2181_04005: Citrate lyase beta chain (EC 4.1.3.6) |
Gene: Mmol_0762: Citrate lyase beta chain (EC 4.1.3.6) |
|
|
|
Gene: p1B303: Citrate lyase beta chain (EC 4.1.3.6) |
|
|
|
|
|
Citrate lyase beta chain (EC 4.1.3.6) |
| MB2181_04000 |
|
Gene: MB2181_04000: acetyl-coenzyme A synthetase family protein |
Gene: Mmol_0763: acetyl-coenzyme A synthetase family protein |
|
|
|
|
|
|
|
|
|
acetyl-coenzyme A synthetase family protein |
| fumA |
Gene: Mfla_1918: Fumarate hydratase class I (EC 4.2.1.2) |
Gene: MB2181_03995: Fumarate hydratase class I (EC 4.2.1.2) |
Gene: Mmol_0764: Fumarate hydratase class I (EC 4.2.1.2) |
|
|
|
Gene: ebA173: Fumarate hydratase class I (EC 4.2.1.2) |
Gene: Daro_1627: Fumarate hydratase class I (EC 4.2.1.2) |
Gene: Tmz1t_2653: Fumarate hydratase class I (EC 4.2.1.2) |
Gene: CV3476: Fumarate hydratase class I (EC 4.2.1.2) |
Gene: LHK_02542: Fumarate hydratase class I (EC 4.2.1.2) |
Gene: NMB1613: Fumarate hydratase class I (EC 4.2.1.2) |
Fumarate hydratase class I (EC 4.2.1.2) |
| Mmol_0765 |
|
|
Gene: Mmol_0765: hypothetical protein |
|
|
|
|
|
|
|
|
|
hypothetical protein |
| acnB |
Gene: Mfla_1817: Aconitate hydratase (EC 4.2.1.3) |
Gene: MB2181_05525: Aconitate hydratase (EC 4.2.1.3) |
Gene: Mmol_0766: Aconitate hydratase (EC 4.2.1.3) |
|
|
|
Gene: ebA5265: Aconitate hydratase (EC 4.2.1.3) |
Gene: Daro_2882: Aconitate hydratase (EC 4.2.1.3) |
*
Thauera sp. MZ1T Site: position = -94 score = 5.40436 sequence = CCGCAAGTCTTATAAAAGACATATAA Gene: Tmz1t_2008: Aconitate hydratase (EC 4.2.1.3) |
Gene: CV2470: Aconitate hydratase (EC 4.2.1.3) |
Gene: LHK_02151: Aconitate hydratase (EC 4.2.1.3) |
Gene: NMB1572: Aconitate hydratase (EC 4.2.1.3) |
Aconitate hydratase (EC 4.2.1.3) |
| CRON 2. | |||||||||||||
| COG2301 |
|
*
Methylophilales bacterium HTCC2181 Site: position = -270 score = 5.54061 sequence = TTCTATATCTTATATAAGAGTTAAAA Site: position = -137 score = 5.63336 sequence = TTTTTACTCTTATATAAGACTTAATA Gene: MB2181_04045: Citrate lyase beta subunit |
*
Methylotenera mobilis JLW8 Site: position = -91 score = 7.36725 sequence = TTTTATATCTTATATAAGACATAAGA Gene: Mmol_0753: Citrate lyase beta subunit |
|
|
|
|
|
|
|
|
|
Citrate lyase beta subunit |
| COG2030 |
|
Gene: MB2181_04050: Acyl dehydratase |
Gene: Mmol_0752: Acyl dehydratase |
|
|
|
|
|
|
|
|
|
Acyl dehydratase |
| citE |
|
Gene: MB2181_04055: Citrate lyase beta chain (EC 4.1.3.6) |
Gene: Mmol_0751: Citrate lyase beta chain (EC 4.1.3.6) |
|
|
|
Gene: ebA6697: Citrate lyase beta chain (EC 4.1.3.6) |
Gene: Daro_2868: Citrate lyase beta chain (EC 4.1.3.6) |
Gene: Tmz1t_2553: Citrate lyase beta chain (EC 4.1.3.6) |
|
|
|
Citrate lyase beta chain (EC 4.1.3.6) |
| prpB |
|
Gene: MB2181_04060: Methylisocitrate lyase (EC 4.1.3.30) |
Gene: Mmol_0750: Methylisocitrate lyase (EC 4.1.3.30) |
|
Gene: Nmul_A0865: Methylisocitrate lyase (EC 4.1.3.30) |
|
|
|
|
Gene: CV2057: Methylisocitrate lyase (EC 4.1.3.30) |
Gene: LHK_02306: Methylisocitrate lyase (EC 4.1.3.30) |
Gene: NMB0430: Methylisocitrate lyase (EC 4.1.3.30) |
Methylisocitrate lyase (EC 4.1.3.30) |
| gltA |
|
Gene: MB2181_04065: 2-methylcitrate synthase (EC 2.3.3.5) |
Gene: Mmol_0749: 2-methylcitrate synthase (EC 2.3.3.5) |
|
Gene: Nmul_A0866: 2-methylcitrate synthase (EC 2.3.3.5) |
|
|
|
|
Gene: CV2056: 2-methylcitrate synthase (EC 2.3.3.5) |
Gene: LHK_02308: 2-methylcitrate synthase (EC 2.3.3.5) |
Gene: NMB0431: 2-methylcitrate synthase (EC 2.3.3.5) |
2-methylcitrate synthase (EC 2.3.3.5) |
| prpD |
|
Gene: MB2181_04070: 2-methylcitrate dehydratase (EC 4.2.1.79) |
Gene: Mmol_0748: 2-methylcitrate dehydratase (EC 4.2.1.79) |
|
Gene: Nmul_A0871: 2-methylcitrate dehydratase (EC 4.2.1.79) |
|
|
|
|
|
|
|
2-methylcitrate dehydratase (EC 4.2.1.79) |
| mdh |
|
|
|
Gene: NE0773: Malate dehydrogenase (EC 1.1.1.37) |
Gene: Nmul_A0864: Malate dehydrogenase (EC 1.1.1.37) |
|
*
Azoarcus sp. EbN1 Site: position = -175 score = 7.05826 sequence = TCTCATGTCTTATATAAGACACCAGA Gene: ebA6695: Malate dehydrogenase (EC 1.1.1.37) |
*
Dechloromonas aromatica RCB Site: position = -160 score = 6.98049 sequence = AAAGTTGTCTTATATAAGACATATGA Gene: Daro_2867: Malate dehydrogenase (EC 1.1.1.37) |
*
Thauera sp. MZ1T Site: position = -201 score = 7.34179 sequence = TCTTGTGTCTTATATAAGATATAAGA Gene: Tmz1t_2552: Malate dehydrogenase (EC 1.1.1.37) |
*
Chromobacterium violaceum ATCC 12472 Site: position = -162 score = 6.99689 sequence = AGATAAGTCTTATATAAGACATAAGA Gene: CV1062: Malate dehydrogenase (EC 1.1.1.37) |
*
Laribacter hongkongensis HLHK9 Site: position = -189 score = 6.1722 sequence = ATGCATGTCTTATATAAGATATAAAA Gene: LHK_02423: Malate dehydrogenase (EC 1.1.1.37) |
|
Malate dehydrogenase (EC 1.1.1.37) |
| CRON 3. | |||||||||||||
| COG1024 |
|
|
|
|
|
|
Gene: ebA3691: Enoyl-CoA hydratase (EC 4.2.1.17) |
*
Dechloromonas aromatica RCB Site: position = -81 score = 6.2636 sequence = TATTATATCTTATAGAAGACATGGCA Gene: Daro_4012: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: Tmz1t_3491: Enoyl-CoA hydratase (EC 4.2.1.17) |
|
|
|
Enoyl-CoA hydratase (EC 4.2.1.17) |
| CRON 4. | |||||||||||||
| aceA |
|
|
|
|
|
|
*
Azoarcus sp. EbN1 Site: position = -179 score = 6.46596 sequence = TCTTATATCTTATATAAGACCTGTTG Gene: ebA4473: Isocitrate lyase (EC 4.1.3.1) |
*
Dechloromonas aromatica RCB Site: position = -127 score = 6.40839 sequence = TCTTATGTCTTATATAAGACTATTGC Gene: Daro_3098: Isocitrate lyase (EC 4.1.3.1) |
*
Thauera sp. MZ1T Site: position = -168 score = 7.30789 sequence = TCTTATGTCTTATATAAGACATATTG Gene: Tmz1t_1247: Isocitrate lyase (EC 4.1.3.1) |
Gene: CV1641: Isocitrate lyase (EC 4.1.3.1) |
Gene: LHK_02742: Isocitrate lyase (EC 4.1.3.1) |
|
Isocitrate lyase (EC 4.1.3.1) |
| CRON 5. | |||||||||||||
| acnA2/acnD |
|
|
|
Gene: NE1002: Aconitate hydratase (EC 4.2.1.3) |
|
|
*
Azoarcus sp. EbN1 Site: position = -266 score = 4.94604 sequence = TTATATGTCTTTTATAAGACTGGGTG Gene: ebA5264: Aconitate hydratase (EC 4.2.1.3) |
|
*
Thauera sp. MZ1T Site: position = -339 score = 5.40436 sequence = TTATATGTCTTTTATAAGACTTGCGG Gene: Tmz1t_2007: Aconitate hydratase (EC 4.2.1.3) |
Gene: CV1121: Aconitate hydratase (EC 4.2.1.3) |
Gene: LHK_02153: Aconitate hydratase (EC 4.2.1.3) |
|
Aconitate hydratase (EC 4.2.1.3) |
| CRON 6. | |||||||||||||
| PF04341 |
|
|
|
|
|
|
|
*
Dechloromonas aromatica RCB Site: position = -71 score = 6.2636 sequence = TGCCATGTCTTCTATAAGATATAATA Gene: Daro_4011: Putative membrane protein DUF485, clustering with ActP |
Gene: Tmz1t_3490: Putative membrane protein DUF485, clustering with ActP |
|
Gene: LHK_01261: Putative membrane protein DUF485, clustering with ActP |
|
Putative membrane protein DUF485, clustering with ActP |
| actP |
|
|
|
|
|
|
Gene: ebA3695: Acetate permease ActP (cation/acetate symporter) |
Gene: Daro_4010: Acetate permease ActP (cation/acetate symporter) |
Gene: Tmz1t_3489: Acetate permease ActP (cation/acetate symporter) |
|
Gene: LHK_01260: Acetate permease ActP (cation/acetate symporter) |
|
Acetate permease ActP (cation/acetate symporter) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |