Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of SdhR in Dechloromonas aromatica RCB

Properties
Regulator type: Transcription factor
TF locus tag: Daro_2866
Regulator family: GntR/Others
Regulation mode:
Biological process: Tricarboxylic acid cycle
Effector:
Regulog: SdhR - Various betaproteobacteria
Statistics of regulated genes:
- Genes 16
- Operons 5
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 24 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -127
Score: 6.4
Sequence: TCTTATGTCTTATATAAGACTATTGC
Locus tag: Daro_3098
Name: aceA
Funciton: Isocitrate lyase (EC 4.1.3.1)
Daro_3098
aceA
Isocitrate lyase (EC 4.1.3.1)
Position: -81
Score: 6.3
Sequence: TATTATATCTTATAGAAGACATGGCA
Locus tag: Daro_4012
Name: COG1024
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Daro_4012
COG1024
Enoyl-CoA hydratase (EC 4.2.1.17)
Position: -160
Score: 7
Sequence: AAAGTTGTCTTATATAAGACATATGA
Locus tag: Daro_2867
Name: mdh
Funciton: Malate dehydrogenase (EC 1.1.1.37)
Locus tag: Daro_2868
Name: citE
Funciton: Citrate lyase beta chain (EC 4.1.3.6)
Daro_2867
mdh
Malate dehydrogenase (EC 1.1.1.37)
Daro_2868
citE
Citrate lyase beta chain (EC 4.1.3.6)
Position: -66
Score: 7
Sequence: TCATATGTCTTATATAAGACAACTTT
Locus tag: Daro_2866
Name: sdhR
Funciton: Transcriptional regulator of TCA cycle, GntR family
Locus tag: Daro_2865
Name: sdhC
Funciton: Succinate dehydrogenase cytochrome b-556 subunit
Locus tag: Daro_2864
Name: sdhD
Funciton: Succinate dehydrogenase, hydrophobic subunit, cytochrome b556
Locus tag: Daro_2863
Name: sdhA
Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Daro_2862
Name: sdhB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: Daro_2861
Name: COG2938
Funciton: succinate dehydrogenase iron-sulfur subunit
Locus tag: Daro_2860
Name: gltA
Funciton: Citrate synthase (si) (EC 2.3.3.1)
Locus tag: Daro_2859
Name: odhA
Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Locus tag: Daro_2858
Name: sucB
Funciton: Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
Locus tag: Daro_2857
Name: lpdA
Funciton: Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4)
Daro_2866
sdhR
Transcriptional regulator of TCA cycle, GntR family
Daro_2865
sdhC
Succinate dehydrogenase cytochrome b-556 subunit
Daro_2864
sdhD
Succinate dehydrogenase, hydrophobic subunit, cytochrome b556
Daro_2863
sdhA
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Daro_2862
sdhB
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Daro_2861
COG2938
succinate dehydrogenase iron-sulfur subunit
Daro_2860
gltA
Citrate synthase (si) (EC 2.3.3.1)
Daro_2859
odhA
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Daro_2858
sucB
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
Daro_2857
lpdA
Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4)
Position: -71
Score: 6.3
Sequence: TGCCATGTCTTCTATAAGATATAATA
Locus tag: Daro_4011
Name: PF04341
Funciton: Putative membrane protein DUF485, clustering with ActP
Locus tag: Daro_4010
Name: actP
Funciton: Acetate permease ActP (cation/acetate symporter)
Daro_4011
PF04341
Putative membrane protein DUF485, clustering with ActP
Daro_4010
actP
Acetate permease ActP (cation/acetate symporter)
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