Regulon of SdhR in Dechloromonas aromatica RCB
| Regulator type: | Transcription factor |
| TF locus tag: | Daro_2866 |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Tricarboxylic acid cycle |
| Effector: | |
| Regulog: | SdhR - Various betaproteobacteria |
| Statistics of regulated genes: | |
| - Genes | 16 |
| - Operons | 5 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Various betaproteobacteria
- By TF family - GntR/Others
- By pathway - Tricarboxylic acid cycle
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -127
Score: 6.4 Sequence: TCTTATGTCTTATATAAGACTATTGC
Locus tag: Daro_3098
Name: aceA Funciton: Isocitrate lyase (EC 4.1.3.1) |
|||
|
aceA
|
Isocitrate lyase (EC 4.1.3.1)
|
||
|
Position: -81
Score: 6.3 Sequence: TATTATATCTTATAGAAGACATGGCA
Locus tag: Daro_4012
Name: COG1024 Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) |
|||
|
COG1024
|
Enoyl-CoA hydratase (EC 4.2.1.17)
|
||
|
Position: -160
Score: 7 Sequence: AAAGTTGTCTTATATAAGACATATGA
Locus tag: Daro_2867
Name: mdh Funciton: Malate dehydrogenase (EC 1.1.1.37)
Locus tag: Daro_2868
Name: citE Funciton: Citrate lyase beta chain (EC 4.1.3.6) |
|||
|
mdh
|
Malate dehydrogenase (EC 1.1.1.37)
|
||
|
citE
|
Citrate lyase beta chain (EC 4.1.3.6)
|
||
|
Position: -66
Score: 7 Sequence: TCATATGTCTTATATAAGACAACTTT
Locus tag: Daro_2866
Name: sdhR Funciton: Transcriptional regulator of TCA cycle, GntR family
Locus tag: Daro_2865
Name: sdhC Funciton: Succinate dehydrogenase cytochrome b-556 subunit
Locus tag: Daro_2864
Name: sdhD Funciton: Succinate dehydrogenase, hydrophobic subunit, cytochrome b556
Locus tag: Daro_2863
Name: sdhA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Daro_2862
Name: sdhB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: Daro_2861
Name: COG2938 Funciton: succinate dehydrogenase iron-sulfur subunit
Locus tag: Daro_2860
Name: gltA Funciton: Citrate synthase (si) (EC 2.3.3.1)
Locus tag: Daro_2859
Name: odhA Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Locus tag: Daro_2858
Name: sucB Funciton: Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
Locus tag: Daro_2857
Name: lpdA Funciton: Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4) |
|||
|
sdhR
|
Transcriptional regulator of TCA cycle, GntR family
|
||
|
sdhC
|
Succinate dehydrogenase cytochrome b-556 subunit
|
||
|
sdhD
|
Succinate dehydrogenase, hydrophobic subunit, cytochrome b556
|
||
|
sdhA
|
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
|
||
|
sdhB
|
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
|
||
|
COG2938
|
succinate dehydrogenase iron-sulfur subunit
|
||
|
gltA
|
Citrate synthase (si) (EC 2.3.3.1)
|
||
|
odhA
|
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
|
||
|
sucB
|
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
|
||
|
lpdA
|
Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4)
|
||
|
Position: -71
Score: 6.3 Sequence: TGCCATGTCTTCTATAAGATATAATA
Locus tag: Daro_4011
Name: PF04341 Funciton: Putative membrane protein DUF485, clustering with ActP
Locus tag: Daro_4010
Name: actP Funciton: Acetate permease ActP (cation/acetate symporter) |
|||
|
PF04341
|
Putative membrane protein DUF485, clustering with ActP
|
||
|
actP
|
Acetate permease ActP (cation/acetate symporter)
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |