Regulon of SdhR in Methylophilales bacterium HTCC2181

Properties
Regulator type:	Transcription factor
TF locus tag:	MB2181_04040
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Tricarboxylic acid cycle
Effector:
Regulog:	SdhR - Various betaproteobacteria
Statistics of regulated genes:
- Genes	16
- Operons	2
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 24 sites [see more]

Member of regulog collections

By taxonomy - Various betaproteobacteria
By TF family - GntR/Others
By pathway - Tricarboxylic acid cycle

Regulated operons
	Locus Tag	Name	Function
Position: -201 Score: 5.6 Sequence: TATTAAGTCTTATATAAGAGTAAAAA Position: -68 Score: 5.5 Sequence: TTTTAACTCTTATATAAGATATAGAA Locus tag: MB2181_04040 Name: sdhR Funciton: Transcriptional regulator of TCA cycle, GntR family Locus tag: MB2181_04035 Name: MB2181_04035 Funciton: Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)) Locus tag: MB2181_04030 Name: sdhC Funciton: Succinate dehydrogenase cytochrome b-556 subunit Locus tag: MB2181_04025 Name: sdhD Funciton: Succinate dehydrogenase, hydrophobic subunit, cytochrome b556 Locus tag: MB2181_04020 Name: sdhA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Locus tag: MB2181_04015 Name: sdhB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) Locus tag: MB2181_04010 Name: COG2938 Funciton: succinate dehydrogenase iron-sulfur subunit Locus tag: MB2181_04005 Name: citE Funciton: Citrate lyase beta chain (EC 4.1.3.6) Locus tag: MB2181_04000 Name: MB2181_04000 Funciton: acetyl-coenzyme A synthetase family protein Locus tag: MB2181_03995 Name: fumA Funciton: Fumarate hydratase class I (EC 4.2.1.2)
	MB2181_04040	sdhR	Transcriptional regulator of TCA cycle, GntR family
	MB2181_04035	MB2181_04035	Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+))
	MB2181_04030	sdhC	Succinate dehydrogenase cytochrome b-556 subunit
	MB2181_04025	sdhD	Succinate dehydrogenase, hydrophobic subunit, cytochrome b556
	MB2181_04020	sdhA	Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
	MB2181_04015	sdhB	Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
	MB2181_04010	COG2938	succinate dehydrogenase iron-sulfur subunit
	MB2181_04005	citE	Citrate lyase beta chain (EC 4.1.3.6)
	MB2181_04000	MB2181_04000	acetyl-coenzyme A synthetase family protein
	MB2181_03995	fumA	Fumarate hydratase class I (EC 4.2.1.2)
Position: -270 Score: 5.5 Sequence: TTCTATATCTTATATAAGAGTTAAAA Position: -137 Score: 5.6 Sequence: TTTTTACTCTTATATAAGACTTAATA Locus tag: MB2181_04045 Name: COG2301 Funciton: Citrate lyase beta subunit Locus tag: MB2181_04050 Name: COG2030 Funciton: Acyl dehydratase Locus tag: MB2181_04055 Name: citE Funciton: Citrate lyase beta chain (EC 4.1.3.6) Locus tag: MB2181_04060 Name: prpB Funciton: Methylisocitrate lyase (EC 4.1.3.30) Locus tag: MB2181_04065 Name: gltA Funciton: 2-methylcitrate synthase (EC 2.3.3.5) Locus tag: MB2181_04070 Name: prpD Funciton: 2-methylcitrate dehydratase (EC 4.2.1.79)
	MB2181_04045	COG2301	Citrate lyase beta subunit
	MB2181_04050	COG2030	Acyl dehydratase
	MB2181_04055	citE	Citrate lyase beta chain (EC 4.1.3.6)
	MB2181_04060	prpB	Methylisocitrate lyase (EC 4.1.3.30)
	MB2181_04065	gltA	2-methylcitrate synthase (EC 2.3.3.5)
	MB2181_04070	prpD	2-methylcitrate dehydratase (EC 4.2.1.79)

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD