Regulog PaaR - Flavobacteria
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Phenylacetic acid degradation |
| Effector: | Phenylacetyl-CoA |
| Phylum: | Bacteroidetes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - PaaR
- By TF family - TetR
- By effector - Phenylacetyl-CoA
- By pathway - Phenylacetic acid degradation
| Genome | Genes | Operons |
|---|---|---|
| Cellulophaga sp. MED134 | 12 | 1 |
| Croceibacter atlanticus HTCC2559 | 9 | 2 |
| Flavobacteriales bacterium ALC-1 | 16 | 1 |
| Flavobacteria bacterium BBFL7 | 7 | 2 |
| Kordia algicida OT-1 | 11 | 1 |
| Psychroflexus torquis ATCC 700755 | 14 | 1 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| paaE |
*
Cellulophaga sp. MED134 Site: position = -42 score = 5.53632 sequence = TTAACTAACAATCGTTAG Gene: MED134_11666: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-. |
*
Croceibacter atlanticus HTCC2559 Site: position = -65 score = 6.20578 sequence = CTAACTAACGTTTGTTAG Gene: CA2559_05340: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-. |
*
Flavobacteriales bacterium ALC-1 Site: position = -39 score = 6.24534 sequence = CAAACTAACAAGTGTTAG Gene: FBALC1_14257: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-. |
*
Flavobacteria bacterium BBFL7 Site: position = -47 score = 6.24534 sequence = CAAACTAACAAGTGTTAG Gene: BBFL7_02466: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-. |
*
Kordia algicida OT-1 Site: position = -44 score = 6.29508 sequence = CAAACTAACAATTGTTAG Gene: KAOT1_20492: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-. |
*
Psychroflexus torquis ATCC 700755 Site: position = -41 score = 5.44702 sequence = TAAACTAACAATCGTTAG Gene: P700755_04168: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-. |
Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-. |
| paaA |
Gene: MED134_11671: Phenylacetate-CoA oxygenase, PaaA subunit |
Gene: CA2559_05335: Phenylacetate-CoA oxygenase, PaaA subunit |
Gene: FBALC1_14252: Phenylacetate-CoA oxygenase, PaaA subunit |
Gene: BBFL7_02465: Phenylacetate-CoA oxygenase, PaaA subunit |
Gene: KAOT1_20497: Phenylacetate-CoA oxygenase, PaaA subunit |
Gene: P700755_04163: Phenylacetate-CoA oxygenase, PaaA subunit |
Phenylacetate-CoA oxygenase, PaaA subunit |
| paaB |
Gene: MED134_11676: Phenylacetate-CoA oxygenase, PaaB subunit |
Gene: CA2559_05330: Phenylacetate-CoA oxygenase, PaaB subunit |
Gene: FBALC1_14247: Phenylacetate-CoA oxygenase, PaaB subunit |
|
Gene: KAOT1_20502: Phenylacetate-CoA oxygenase, PaaB subunit |
Gene: P700755_04158: Phenylacetate-CoA oxygenase, PaaB subunit |
Phenylacetate-CoA oxygenase, PaaB subunit |
| paaC |
Gene: MED134_11681: Phenylacetate-CoA oxygenase, PaaC subunit |
Gene: CA2559_05320: Phenylacetate-CoA oxygenase, PaaC subunit |
Gene: FBALC1_14242: Phenylacetate-CoA oxygenase, PaaC subunit |
Gene: BBFL7_02463: Phenylacetate-CoA oxygenase, PaaC subunit |
Gene: KAOT1_20507: Phenylacetate-CoA oxygenase, PaaC subunit |
Gene: P700755_04153: Phenylacetate-CoA oxygenase, PaaC subunit |
Phenylacetate-CoA oxygenase, PaaC subunit |
| paaD |
Gene: MED134_11686: Phenylacetate-CoA oxygenase, PaaD subunit |
Gene: CA2559_05315: Phenylacetate-CoA oxygenase, PaaD subunit |
Gene: FBALC1_14237: Phenylacetate-CoA oxygenase, PaaD subunit |
Gene: BBFL7_02461: Phenylacetate-CoA oxygenase, PaaD subunit |
Gene: KAOT1_20512: Phenylacetate-CoA oxygenase, PaaD subunit |
Gene: P700755_04148: Phenylacetate-CoA oxygenase, PaaD subunit |
Phenylacetate-CoA oxygenase, PaaD subunit |
| FBALC1_14232 |
|
|
Gene: FBALC1_14232: hypothetical protein |
|
|
|
hypothetical protein |
| paaG |
Gene: MED134_11691: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: CA2559_05310: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: FBALC1_14227: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: BBFL7_02459: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: KAOT1_20517: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: P700755_04143: Enoyl-CoA hydratase (EC 4.2.1.17) |
Enoyl-CoA hydratase (EC 4.2.1.17) |
| FBALC1_14222 |
|
|
Gene: FBALC1_14222: serine racemase |
|
|
|
serine racemase |
| paaH |
Gene: MED134_11696: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
Gene: CA2559_05300: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
Gene: FBALC1_14217: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
Gene: BBFL7_02458: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
Gene: KAOT1_20527: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
Gene: P700755_04133: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
| paaY |
Gene: MED134_11701: thioesterase superfamily protein |
Gene: CA2559_05295: thioesterase superfamily protein |
Gene: FBALC1_14212: thioesterase superfamily protein |
Gene: BBFL7_02456: thioesterase superfamily protein |
Gene: KAOT1_20537: thioesterase superfamily protein |
Gene: P700755_04128: thioesterase superfamily protein |
thioesterase superfamily protein |
| paaJ |
Gene: MED134_11706: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) |
Gene: CA2559_05285: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) |
Gene: FBALC1_14207: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) |
Gene: BBFL7_02454: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) |
Gene: KAOT1_20542: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) |
Gene: P700755_04123: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) |
Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) |
| MED134_11711 |
Gene: MED134_11711: Probable short-chain dehydrogenase |
Gene: CA2559_05280: Probable short-chain dehydrogenase |
Gene: FBALC1_14202: Probable short-chain dehydrogenase |
|
|
|
Probable short-chain dehydrogenase |
| paaZ |
Gene: MED134_11716: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ |
Gene: CA2559_05275: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ |
Gene: FBALC1_14197: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ |
*
Flavobacteria bacterium BBFL7 Site: position = -104 score = 5.84382 sequence = TTAACTAACAACTGTTAG Gene: BBFL7_02452: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ |
Gene: KAOT1_20547: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ |
Gene: P700755_04108: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ |
Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ |
| MED134_05859 |
|
|
Gene: FBALC1_14192: hypothetical protein |
|
|
|
hypothetical protein |
| paaF |
Gene: MED134_11721: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: CA2559_05265: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: FBALC1_14187: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: BBFL7_02451: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: KAOT1_20557: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: P700755_04103: Enoyl-CoA hydratase (EC 4.2.1.17) |
Enoyl-CoA hydratase (EC 4.2.1.17) |
| paaY2 |
Gene: MED134_11731: Phenylacetic acid degradation protein PaaY |
Gene: CA2559_05255: Phenylacetic acid degradation protein PaaY |
Gene: FBALC1_14182: Phenylacetic acid degradation protein PaaY |
Gene: BBFL7_02449: Phenylacetic acid degradation protein PaaY |
Gene: KAOT1_20562: Phenylacetic acid degradation protein PaaY |
|
Phenylacetic acid degradation protein PaaY |
| KAOT1_20522 |
|
|
|
|
Gene: KAOT1_20522: hypothetical protein |
Gene: P700755_04138: hypothetical protein |
hypothetical protein |
| P700755_04118 |
|
|
|
|
|
Gene: P700755_04118: hypothetical protein |
hypothetical protein |
| P700755_04113 |
|
|
|
|
|
Gene: P700755_04113: acetyl-CoA acetyltransferase |
acetyl-CoA acetyltransferase |
| MED134_10421 |
|
|
|
Gene: BBFL7_02455: hypothetical protein |
Gene: KAOT1_20532: hypothetical protein |
|
hypothetical protein |
| CA2559_05325 |
|
Gene: CA2559_05325: hypothetical protein |
|
Gene: BBFL7_02462: hypothetical protein |
|
|
hypothetical protein |
| BBFL7_02464 |
|
|
|
Gene: BBFL7_02464: hypothetical protein |
|
|
hypothetical protein |
| CRON 2. | |||||||
| paaR |
Gene: MED134_11661: Transcriptional regulator of phenylacetic acid degradation, TetR family |
*
Croceibacter atlanticus HTCC2559 Site: position = -38 score = 6.33464 sequence = CTAACTAACAAGTGTTAG Gene: CA2559_05345: Transcriptional regulator of phenylacetic acid degradation, TetR family |
Gene: FBALC1_14262: Transcriptional regulator of phenylacetic acid degradation, TetR family |
Gene: BBFL7_00982: Transcriptional regulator of phenylacetic acid degradation, TetR family |
Gene: KAOT1_20482: Transcriptional regulator of phenylacetic acid degradation, TetR family |
Gene: P700755_04188: Transcriptional regulator of phenylacetic acid degradation, TetR family |
Transcriptional regulator of phenylacetic acid degradation, TetR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |