Regulog PaaR - Flavobacteria

Properties
Regulator type:	Transcription factor
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Phenylacetic acid degradation
Effector:	Phenylacetyl-CoA
Phylum:	Bacteroidetes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 8 sites [see more]

Member of regulog collections

By trascription factor - PaaR
By TF family - TetR
By effector - Phenylacetyl-CoA
By pathway - Phenylacetic acid degradation

Statistics of regulated genes
Genome	Genes	Operons
Cellulophaga sp. MED134	12	1
Croceibacter atlanticus HTCC2559	9	2
Flavobacteriales bacterium ALC-1	16	1
Flavobacteria bacterium BBFL7	7	2
Kordia algicida OT-1	11	1
Psychroflexus torquis ATCC 700755	14	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes							Function

CRON 1.
paaE	* Cellulophaga sp. MED134 Site: position = -42 score = 5.53632 sequence = TTAACTAACAATCGTTAG Gene: MED134_11666: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.	* Croceibacter atlanticus HTCC2559 Site: position = -65 score = 6.20578 sequence = CTAACTAACGTTTGTTAG Gene: CA2559_05340: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.	* Flavobacteriales bacterium ALC-1 Site: position = -39 score = 6.24534 sequence = CAAACTAACAAGTGTTAG Gene: FBALC1_14257: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.	* Flavobacteria bacterium BBFL7 Site: position = -47 score = 6.24534 sequence = CAAACTAACAAGTGTTAG Gene: BBFL7_02466: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.	* Kordia algicida OT-1 Site: position = -44 score = 6.29508 sequence = CAAACTAACAATTGTTAG Gene: KAOT1_20492: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.	* Psychroflexus torquis ATCC 700755 Site: position = -41 score = 5.44702 sequence = TAAACTAACAATCGTTAG Gene: P700755_04168: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.	Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.
paaA	Cellulophaga sp. MED134 Gene: MED134_11671: Phenylacetate-CoA oxygenase, PaaA subunit	Croceibacter atlanticus HTCC2559 Gene: CA2559_05335: Phenylacetate-CoA oxygenase, PaaA subunit	Flavobacteriales bacterium ALC-1 Gene: FBALC1_14252: Phenylacetate-CoA oxygenase, PaaA subunit	Flavobacteria bacterium BBFL7 Gene: BBFL7_02465: Phenylacetate-CoA oxygenase, PaaA subunit	Kordia algicida OT-1 Gene: KAOT1_20497: Phenylacetate-CoA oxygenase, PaaA subunit	Psychroflexus torquis ATCC 700755 Gene: P700755_04163: Phenylacetate-CoA oxygenase, PaaA subunit	Phenylacetate-CoA oxygenase, PaaA subunit
paaB	Cellulophaga sp. MED134 Gene: MED134_11676: Phenylacetate-CoA oxygenase, PaaB subunit	Croceibacter atlanticus HTCC2559 Gene: CA2559_05330: Phenylacetate-CoA oxygenase, PaaB subunit	Flavobacteriales bacterium ALC-1 Gene: FBALC1_14247: Phenylacetate-CoA oxygenase, PaaB subunit	Flavobacteria bacterium BBFL7	Kordia algicida OT-1 Gene: KAOT1_20502: Phenylacetate-CoA oxygenase, PaaB subunit	Psychroflexus torquis ATCC 700755 Gene: P700755_04158: Phenylacetate-CoA oxygenase, PaaB subunit	Phenylacetate-CoA oxygenase, PaaB subunit
paaC	Cellulophaga sp. MED134 Gene: MED134_11681: Phenylacetate-CoA oxygenase, PaaC subunit	Croceibacter atlanticus HTCC2559 Gene: CA2559_05320: Phenylacetate-CoA oxygenase, PaaC subunit	Flavobacteriales bacterium ALC-1 Gene: FBALC1_14242: Phenylacetate-CoA oxygenase, PaaC subunit	Flavobacteria bacterium BBFL7 Gene: BBFL7_02463: Phenylacetate-CoA oxygenase, PaaC subunit	Kordia algicida OT-1 Gene: KAOT1_20507: Phenylacetate-CoA oxygenase, PaaC subunit	Psychroflexus torquis ATCC 700755 Gene: P700755_04153: Phenylacetate-CoA oxygenase, PaaC subunit	Phenylacetate-CoA oxygenase, PaaC subunit
paaD	Cellulophaga sp. MED134 Gene: MED134_11686: Phenylacetate-CoA oxygenase, PaaD subunit	Croceibacter atlanticus HTCC2559 Gene: CA2559_05315: Phenylacetate-CoA oxygenase, PaaD subunit	Flavobacteriales bacterium ALC-1 Gene: FBALC1_14237: Phenylacetate-CoA oxygenase, PaaD subunit	Flavobacteria bacterium BBFL7 Gene: BBFL7_02461: Phenylacetate-CoA oxygenase, PaaD subunit	Kordia algicida OT-1 Gene: KAOT1_20512: Phenylacetate-CoA oxygenase, PaaD subunit	Psychroflexus torquis ATCC 700755 Gene: P700755_04148: Phenylacetate-CoA oxygenase, PaaD subunit	Phenylacetate-CoA oxygenase, PaaD subunit
FBALC1_14232	Cellulophaga sp. MED134	Croceibacter atlanticus HTCC2559	Flavobacteriales bacterium ALC-1 Gene: FBALC1_14232: hypothetical protein	Flavobacteria bacterium BBFL7	Kordia algicida OT-1	Psychroflexus torquis ATCC 700755	hypothetical protein
paaG	Cellulophaga sp. MED134 Gene: MED134_11691: Enoyl-CoA hydratase (EC 4.2.1.17)	Croceibacter atlanticus HTCC2559 Gene: CA2559_05310: Enoyl-CoA hydratase (EC 4.2.1.17)	Flavobacteriales bacterium ALC-1 Gene: FBALC1_14227: Enoyl-CoA hydratase (EC 4.2.1.17)	Flavobacteria bacterium BBFL7 Gene: BBFL7_02459: Enoyl-CoA hydratase (EC 4.2.1.17)	Kordia algicida OT-1 Gene: KAOT1_20517: Enoyl-CoA hydratase (EC 4.2.1.17)	Psychroflexus torquis ATCC 700755 Gene: P700755_04143: Enoyl-CoA hydratase (EC 4.2.1.17)	Enoyl-CoA hydratase (EC 4.2.1.17)
FBALC1_14222	Cellulophaga sp. MED134	Croceibacter atlanticus HTCC2559	Flavobacteriales bacterium ALC-1 Gene: FBALC1_14222: serine racemase	Flavobacteria bacterium BBFL7	Kordia algicida OT-1	Psychroflexus torquis ATCC 700755	serine racemase
paaH	Cellulophaga sp. MED134 Gene: MED134_11696: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)	Croceibacter atlanticus HTCC2559 Gene: CA2559_05300: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)	Flavobacteriales bacterium ALC-1 Gene: FBALC1_14217: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)	Flavobacteria bacterium BBFL7 Gene: BBFL7_02458: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)	Kordia algicida OT-1 Gene: KAOT1_20527: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)	Psychroflexus torquis ATCC 700755 Gene: P700755_04133: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)	3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
paaY	Cellulophaga sp. MED134 Gene: MED134_11701: thioesterase superfamily protein	Croceibacter atlanticus HTCC2559 Gene: CA2559_05295: thioesterase superfamily protein	Flavobacteriales bacterium ALC-1 Gene: FBALC1_14212: thioesterase superfamily protein	Flavobacteria bacterium BBFL7 Gene: BBFL7_02456: thioesterase superfamily protein	Kordia algicida OT-1 Gene: KAOT1_20537: thioesterase superfamily protein	Psychroflexus torquis ATCC 700755 Gene: P700755_04128: thioesterase superfamily protein	thioesterase superfamily protein
paaJ	Cellulophaga sp. MED134 Gene: MED134_11706: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)	Croceibacter atlanticus HTCC2559 Gene: CA2559_05285: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)	Flavobacteriales bacterium ALC-1 Gene: FBALC1_14207: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)	Flavobacteria bacterium BBFL7 Gene: BBFL7_02454: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)	Kordia algicida OT-1 Gene: KAOT1_20542: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)	Psychroflexus torquis ATCC 700755 Gene: P700755_04123: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)	Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
MED134_11711	Cellulophaga sp. MED134 Gene: MED134_11711: Probable short-chain dehydrogenase	Croceibacter atlanticus HTCC2559 Gene: CA2559_05280: Probable short-chain dehydrogenase	Flavobacteriales bacterium ALC-1 Gene: FBALC1_14202: Probable short-chain dehydrogenase	Flavobacteria bacterium BBFL7	Kordia algicida OT-1	Psychroflexus torquis ATCC 700755	Probable short-chain dehydrogenase
paaZ	Cellulophaga sp. MED134 Gene: MED134_11716: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ	Croceibacter atlanticus HTCC2559 Gene: CA2559_05275: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ	Flavobacteriales bacterium ALC-1 Gene: FBALC1_14197: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ	* Flavobacteria bacterium BBFL7 Site: position = -104 score = 5.84382 sequence = TTAACTAACAACTGTTAG Gene: BBFL7_02452: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ	Kordia algicida OT-1 Gene: KAOT1_20547: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ	Psychroflexus torquis ATCC 700755 Gene: P700755_04108: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ	Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
MED134_05859	Cellulophaga sp. MED134	Croceibacter atlanticus HTCC2559	Flavobacteriales bacterium ALC-1 Gene: FBALC1_14192: hypothetical protein	Flavobacteria bacterium BBFL7	Kordia algicida OT-1	Psychroflexus torquis ATCC 700755	hypothetical protein
paaF	Cellulophaga sp. MED134 Gene: MED134_11721: Enoyl-CoA hydratase (EC 4.2.1.17)	Croceibacter atlanticus HTCC2559 Gene: CA2559_05265: Enoyl-CoA hydratase (EC 4.2.1.17)	Flavobacteriales bacterium ALC-1 Gene: FBALC1_14187: Enoyl-CoA hydratase (EC 4.2.1.17)	Flavobacteria bacterium BBFL7 Gene: BBFL7_02451: Enoyl-CoA hydratase (EC 4.2.1.17)	Kordia algicida OT-1 Gene: KAOT1_20557: Enoyl-CoA hydratase (EC 4.2.1.17)	Psychroflexus torquis ATCC 700755 Gene: P700755_04103: Enoyl-CoA hydratase (EC 4.2.1.17)	Enoyl-CoA hydratase (EC 4.2.1.17)
paaY2	Cellulophaga sp. MED134 Gene: MED134_11731: Phenylacetic acid degradation protein PaaY	Croceibacter atlanticus HTCC2559 Gene: CA2559_05255: Phenylacetic acid degradation protein PaaY	Flavobacteriales bacterium ALC-1 Gene: FBALC1_14182: Phenylacetic acid degradation protein PaaY	Flavobacteria bacterium BBFL7 Gene: BBFL7_02449: Phenylacetic acid degradation protein PaaY	Kordia algicida OT-1 Gene: KAOT1_20562: Phenylacetic acid degradation protein PaaY	Psychroflexus torquis ATCC 700755	Phenylacetic acid degradation protein PaaY
KAOT1_20522	Cellulophaga sp. MED134	Croceibacter atlanticus HTCC2559	Flavobacteriales bacterium ALC-1	Flavobacteria bacterium BBFL7	Kordia algicida OT-1 Gene: KAOT1_20522: hypothetical protein	Psychroflexus torquis ATCC 700755 Gene: P700755_04138: hypothetical protein	hypothetical protein
P700755_04118	Cellulophaga sp. MED134	Croceibacter atlanticus HTCC2559	Flavobacteriales bacterium ALC-1	Flavobacteria bacterium BBFL7	Kordia algicida OT-1	Psychroflexus torquis ATCC 700755 Gene: P700755_04118: hypothetical protein	hypothetical protein
P700755_04113	Cellulophaga sp. MED134	Croceibacter atlanticus HTCC2559	Flavobacteriales bacterium ALC-1	Flavobacteria bacterium BBFL7	Kordia algicida OT-1	Psychroflexus torquis ATCC 700755 Gene: P700755_04113: acetyl-CoA acetyltransferase	acetyl-CoA acetyltransferase
MED134_10421	Cellulophaga sp. MED134	Croceibacter atlanticus HTCC2559	Flavobacteriales bacterium ALC-1	Flavobacteria bacterium BBFL7 Gene: BBFL7_02455: hypothetical protein	Kordia algicida OT-1 Gene: KAOT1_20532: hypothetical protein	Psychroflexus torquis ATCC 700755	hypothetical protein
CA2559_05325	Cellulophaga sp. MED134	Croceibacter atlanticus HTCC2559 Gene: CA2559_05325: hypothetical protein	Flavobacteriales bacterium ALC-1	Flavobacteria bacterium BBFL7 Gene: BBFL7_02462: hypothetical protein	Kordia algicida OT-1	Psychroflexus torquis ATCC 700755	hypothetical protein
BBFL7_02464	Cellulophaga sp. MED134	Croceibacter atlanticus HTCC2559	Flavobacteriales bacterium ALC-1	Flavobacteria bacterium BBFL7 Gene: BBFL7_02464: hypothetical protein	Kordia algicida OT-1	Psychroflexus torquis ATCC 700755	hypothetical protein

CRON 2.
paaR	Cellulophaga sp. MED134 Gene: MED134_11661: Transcriptional regulator of phenylacetic acid degradation, TetR family	* Croceibacter atlanticus HTCC2559 Site: position = -38 score = 6.33464 sequence = CTAACTAACAAGTGTTAG Gene: CA2559_05345: Transcriptional regulator of phenylacetic acid degradation, TetR family	Flavobacteriales bacterium ALC-1 Gene: FBALC1_14262: Transcriptional regulator of phenylacetic acid degradation, TetR family	Flavobacteria bacterium BBFL7 Gene: BBFL7_00982: Transcriptional regulator of phenylacetic acid degradation, TetR family	Kordia algicida OT-1 Gene: KAOT1_20482: Transcriptional regulator of phenylacetic acid degradation, TetR family	Psychroflexus torquis ATCC 700755 Gene: P700755_04188: Transcriptional regulator of phenylacetic acid degradation, TetR family	Transcriptional regulator of phenylacetic acid degradation, TetR family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PaaR - Flavobacteria

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --