Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing paaY gene

Properties
Regulog: PaaR - Flavobacteria
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Phenylacetic acid degradation
Effector: Phenylacetyl-CoA
Phylum: Bacteroidetes
Built upon 8 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Cellulophaga sp. MED134
Position: -42
Score: 5.53632
Sequence: TTAACTAACAATCGTTAG
Locus tag: MED134_11666
Name: paaE
Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.
Locus tag: MED134_11671
Name: paaA
Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: MED134_11676
Name: paaB
Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: MED134_11681
Name: paaC
Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: MED134_11686
Name: paaD
Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: MED134_11691
Name: paaG
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: MED134_11696
Name: paaH
Funciton: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
Locus tag: MED134_11701
Name: paaY
Funciton: thioesterase superfamily protein
Locus tag: MED134_11706
Name: paaJ
Funciton: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
Locus tag: MED134_11711
Name: null
Funciton: Probable short-chain dehydrogenase
Locus tag: MED134_11716
Name: paaZ
Funciton: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
Locus tag: MED134_11721
Name: paaF
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
paaE-paaA-paaB-paaC-paaD-paaG-paaH-paaY-paaJ-MED134_11711-paaZ-paaF -42 5.5 TTAACTAACAATCGTTAG MED134_11666
Flavobacteriales bacterium ALC-1
Position: -39
Score: 6.24534
Sequence: CAAACTAACAAGTGTTAG
Locus tag: FBALC1_14257
Name: paaE
Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.
Locus tag: FBALC1_14252
Name: paaA
Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: FBALC1_14247
Name: paaB
Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: FBALC1_14242
Name: paaC
Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: FBALC1_14237
Name: paaD
Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: FBALC1_14232
Name: null
Funciton: hypothetical protein
Locus tag: FBALC1_14227
Name: paaG
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: FBALC1_14222
Name: null
Funciton: serine racemase
Locus tag: FBALC1_14217
Name: paaH
Funciton: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
Locus tag: FBALC1_14212
Name: paaY
Funciton: thioesterase superfamily protein
Locus tag: FBALC1_14207
Name: paaJ
Funciton: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
Locus tag: FBALC1_14202
Name: null
Funciton: Probable short-chain dehydrogenase
Locus tag: FBALC1_14197
Name: paaZ
Funciton: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
Locus tag: FBALC1_14192
Name: null
Funciton: hypothetical protein
Locus tag: FBALC1_14187
Name: paaF
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: FBALC1_14182
Name: paaY2
Funciton: Phenylacetic acid degradation protein PaaY
paaE-paaA-paaB-paaC-paaD-FBALC1_14232-paaG-FBALC1_14222-paaH-paaY-paaJ-FBALC1_14202-paaZ-FBALC1_14192-paaF-paaY2 -39 6.2 CAAACTAACAAGTGTTAG FBALC1_14257
Kordia algicida OT-1
Position: -44
Score: 6.29508
Sequence: CAAACTAACAATTGTTAG
Locus tag: KAOT1_20492
Name: paaE
Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.
Locus tag: KAOT1_20497
Name: paaA
Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: KAOT1_20502
Name: paaB
Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: KAOT1_20507
Name: paaC
Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: KAOT1_20512
Name: paaD
Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: KAOT1_20517
Name: paaG
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: KAOT1_20522
Name: null
Funciton: hypothetical protein
Locus tag: KAOT1_20527
Name: paaH
Funciton: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
Locus tag: KAOT1_20532
Name: MED134_10421
Funciton: hypothetical protein
Locus tag: KAOT1_20537
Name: paaY
Funciton: thioesterase superfamily protein
Locus tag: KAOT1_20542
Name: paaJ
Funciton: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
paaE-paaA-paaB-paaC-paaD-paaG-KAOT1_20522-paaH-MED134_10421-paaY-paaJ -44 6.3 CAAACTAACAATTGTTAG KAOT1_20492
Psychroflexus torquis ATCC 700755
Position: -41
Score: 5.44702
Sequence: TAAACTAACAATCGTTAG
Locus tag: P700755_04168
Name: paaE
Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.
Locus tag: P700755_04163
Name: paaA
Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: P700755_04158
Name: paaB
Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: P700755_04153
Name: paaC
Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: P700755_04148
Name: paaD
Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: P700755_04143
Name: paaG
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: P700755_04138
Name: null
Funciton: hypothetical protein
Locus tag: P700755_04133
Name: paaH
Funciton: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
Locus tag: P700755_04128
Name: paaY
Funciton: thioesterase superfamily protein
Locus tag: P700755_04123
Name: paaJ
Funciton: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
Locus tag: P700755_04118
Name: null
Funciton: hypothetical protein
Locus tag: P700755_04113
Name: null
Funciton: acetyl-CoA acetyltransferase
Locus tag: P700755_04108
Name: paaZ
Funciton: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
Locus tag: P700755_04103
Name: paaF
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
paaE-paaA-paaB-paaC-paaD-paaG-P700755_04138-paaH-paaY-paaJ-P700755_04118-P700755_04113-paaZ-paaF -41 5.4 TAAACTAACAATCGTTAG P700755_04168