Regulon of PaaR in Cellulophaga sp. MED134

Properties
Regulator type:	Transcription factor
TF locus tag:	MED134_11661
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Phenylacetic acid degradation
Effector:	Phenylacetyl-CoA
Regulog:	PaaR - Flavobacteria
Statistics of regulated genes:
- Genes	12
- Operons	1
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 8 sites [see more]

Member of regulog collections

By trascription factor - PaaR
By TF family - TetR
By effector - Phenylacetyl-CoA
By pathway - Phenylacetic acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -42 Score: 5.5 Sequence: TTAACTAACAATCGTTAG Locus tag: MED134_11666 Name: paaE Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-. Locus tag: MED134_11671 Name: paaA Funciton: Phenylacetate-CoA oxygenase, PaaA subunit Locus tag: MED134_11676 Name: paaB Funciton: Phenylacetate-CoA oxygenase, PaaB subunit Locus tag: MED134_11681 Name: paaC Funciton: Phenylacetate-CoA oxygenase, PaaC subunit Locus tag: MED134_11686 Name: paaD Funciton: Phenylacetate-CoA oxygenase, PaaD subunit Locus tag: MED134_11691 Name: paaG Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) Locus tag: MED134_11696 Name: paaH Funciton: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) Locus tag: MED134_11701 Name: paaY Funciton: thioesterase superfamily protein Locus tag: MED134_11706 Name: paaJ Funciton: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) Locus tag: MED134_11711 Name: null Funciton: Probable short-chain dehydrogenase Locus tag: MED134_11716 Name: paaZ Funciton: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ Locus tag: MED134_11721 Name: paaF Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
	MED134_11666	paaE	Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.
	MED134_11671	paaA	Phenylacetate-CoA oxygenase, PaaA subunit
	MED134_11676	paaB	Phenylacetate-CoA oxygenase, PaaB subunit
	MED134_11681	paaC	Phenylacetate-CoA oxygenase, PaaC subunit
	MED134_11686	paaD	Phenylacetate-CoA oxygenase, PaaD subunit
	MED134_11691	paaG	Enoyl-CoA hydratase (EC 4.2.1.17)
	MED134_11696	paaH	3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
	MED134_11701	paaY	thioesterase superfamily protein
	MED134_11706	paaJ	Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
	MED134_11711		Probable short-chain dehydrogenase
	MED134_11716	paaZ	Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
	MED134_11721	paaF	Enoyl-CoA hydratase (EC 4.2.1.17)

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD