Regulog Cobalamin - Chlorobiales
| Regulator type: | RNA regulatory element |
| Name: | Cobalamin |
| RFAM: | RF00174 |
| Regulation mode: | |
| Biological process: | Cobalamin biosynthesis |
| Effector: | Adenosylcobalamin |
| Phylum: | Chlorobiales |
Member of regulog collections
- By taxonomy - Chlorobiales
- By RNA motif - Cobalamin
- By effector - Adenosylcobalamin
- By pathway - Cobalamin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Chlorobium chlorochromatii CaD3 | 4 | 1 |
| Prosthecochloris aestuarii DSM 271 | 34 | 7 |
| Chlorobium phaeobacteroides BS1 | 11 | 2 |
| Chlorobaculum parvum NCIB 8327 | 27 | 3 |
| Pelodictyon luteolum DSM 273 | 14 | 3 |
| Prosthecochloris vibrioformis DSM 265 | 17 | 4 |
| Chlorobium limicola DSM 245 | 32 | 4 |
| Chlorobium phaeobacteroides DSM 266 | 9 | 1 |
| Chlorobium ferrooxidans DSM 13031 | 9 | 1 |
| Pelodictyon phaeoclathratiforme BU-1 | 12 | 2 |
| Chloroherpeton thalassium ATCC 35110 | 29 | 6 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| metE |
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Prosthecochloris aestuarii DSM 271 Site: position = -197 score = 97.61 sequence = TTTCTTATTGGTGAA... Gene: Paes_1272: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
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5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
| CRON 2. | ||||||||||||
| btuF |
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Gene: Paes_1299: Vitamin B12 ABC transporter, B12-binding component BtuF |
Gene: Cphamn1_1518: Vitamin B12 ABC transporter, B12-binding component BtuF |
Gene: Cpar_1183: Vitamin B12 ABC transporter, B12-binding component BtuF |
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Gene: Cvib_0813: Vitamin B12 ABC transporter, B12-binding component BtuF |
Gene: Clim_1003: Vitamin B12 ABC transporter, B12-binding component BtuF |
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*3
Chloroherpeton thalassium ATCC 35110 Site: position = -235 score = 94.44 sequence = AAATAACGGCCTGTT... Gene: Ctha_2451: Vitamin B12 ABC transporter, B12-binding component BtuF Gene: Ctha_2447: Vitamin B12 ABC transporter, B12-binding component BtuF Site: position = -227 score = 93.55 sequence = GTATAATTTCCCTTC... Gene: Ctha_2234: Vitamin B12 ABC transporter, B12-binding component BtuF |
Vitamin B12 ABC transporter, B12-binding component BtuF |
| cbiZ |
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Gene: Paes_1295: Adenosylcobinamide amidohydrolase (EC 3.5.1.90) |
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Gene: Clim_1007: Adenosylcobinamide amidohydrolase (EC 3.5.1.90) |
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Gene: Ctha_2233: Adenosylcobinamide amidohydrolase (EC 3.5.1.90) |
Adenosylcobinamide amidohydrolase (EC 3.5.1.90) |
| PF00795 |
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Gene: Paes_1294: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein |
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Gene: Clim_1008: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein |
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Gene: Ctha_2232: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein |
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein |
| nfo |
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Gene: Ctha_2231: Endonuclease IV (EC 3.1.21.2) |
Endonuclease IV (EC 3.1.21.2) |
| cbiM |
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Gene: Cpar_1484: Substrate-specific component CbiM of cobalt ECF transporter |
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Gene: Clim_1060: Substrate-specific component CbiM of cobalt ECF transporter |
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Gene: Ctha_2230: Substrate-specific component CbiM of cobalt ECF transporter |
Substrate-specific component CbiM of cobalt ECF transporter |
| cbiN |
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Gene: Cpar_1483: Additional substrate-specific component CbiN of cobalt ECF transporter |
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Gene: Clim_1061: Additional substrate-specific component CbiN of cobalt ECF transporter |
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Gene: Ctha_2229: Additional substrate-specific component CbiN of cobalt ECF transporter |
Additional substrate-specific component CbiN of cobalt ECF transporter |
| cbiQ |
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Gene: Cpar_1482: Transmembrane component CbiQ of energizing module of cobalt ECF transporter |
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Gene: Clim_1062: Transmembrane component CbiQ of energizing module of cobalt ECF transporter |
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Gene: Ctha_2228: Transmembrane component CbiQ of energizing module of cobalt ECF transporter |
Transmembrane component CbiQ of energizing module of cobalt ECF transporter |
| cbiO |
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Gene: Cpar_1481: ATPase component CbiO of energizing module of cobalt ECF transporter |
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Gene: Clim_1063: ATPase component CbiO of energizing module of cobalt ECF transporter |
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Gene: Ctha_2227: ATPase component CbiO of energizing module of cobalt ECF transporter |
ATPase component CbiO of energizing module of cobalt ECF transporter |
| yeeZ |
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Gene: Ctha_2226: NAD-dependent epimerase/dehydratase |
NAD-dependent epimerase/dehydratase |
| bluB |
Gene: Cag_1013: Cob(II)yrinic acid a,c-diamide reductase |
Gene: Paes_1270: Cob(II)yrinic acid a,c-diamide reductase |
Gene: Cphamn1_1517: Cob(II)yrinic acid a,c-diamide reductase |
Gene: Cpar_1182: Cob(II)yrinic acid a,c-diamide reductase |
Gene: Plut_1141: Cob(II)yrinic acid a,c-diamide reductase |
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Gene: Clim_1065: Cob(II)yrinic acid a,c-diamide reductase |
Gene: Cpha266_1116: Cob(II)yrinic acid a,c-diamide reductase |
Gene: CferDRAFT_0904: Cob(II)yrinic acid a,c-diamide reductase |
Gene: Ppha_1263: Cob(II)yrinic acid a,c-diamide reductase |
Gene: Ctha_2225: Cob(II)yrinic acid a,c-diamide reductase |
Cob(II)yrinic acid a,c-diamide reductase |
| cobA |
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Gene: Paes_1293: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
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Gene: Cpar_1480: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
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Gene: Clim_1009: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
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Gene: Ctha_2224: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
| cbiX |
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Gene: Ctha_2223: Sirohydrochlorin cobaltochelatase (EC 4.99.1.3) |
Sirohydrochlorin cobaltochelatase (EC 4.99.1.3) |
| Ctha_2222 |
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Gene: Ctha_2222: Hypothetical protein |
Hypothetical protein |
| cbiL |
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Gene: Paes_1291: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
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Gene: Cpar_1478: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
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Gene: Clim_1011: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
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Gene: Ctha_2221: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
| cbiHC |
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Gene: Paes_1290: Cobalt-precorrin-3b C17-methyltransferase / Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
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Gene: Cpar_1477: Cobalt-precorrin-3b C17-methyltransferase / Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
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Gene: Clim_1012: Cobalt-precorrin-3b C17-methyltransferase / Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
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Gene: Ctha_2220: Cobalt-precorrin-3b C17-methyltransferase / Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
Cobalt-precorrin-3b C17-methyltransferase / Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
| Ppha_2188 |
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Gene: Ctha_2219: Prevent-host-death family protein |
Prevent-host-death family protein |
| Ctha_1695 |
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Gene: Ctha_2218: Conserved hypothetical protein |
Conserved hypothetical protein |
| cbiET |
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Gene: Paes_1289: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) |
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Gene: Cpar_1476: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) |
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Gene: Clim_1013: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) |
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Gene: Ctha_2217: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) |
Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) |
| btuB7 |
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Chlorobium chlorochromatii CaD3 Site: position = -487 score = 68.64 sequence = TGTTCTTTTACTTGT... Gene: Cag_1014: Outer membrane vitamin B12 receptor BtuB |
*2
Prosthecochloris aestuarii DSM 271 Site: position = -518 score = 81.88 sequence = TGTTCTTTCGCTTGT... Gene: Paes_1301: Outer membrane vitamin B12 receptor BtuB Site: position = -454 score = 76.48 sequence = TGTTCTTTCTCTTGT... Gene: Paes_1271: Outer membrane vitamin B12 receptor BtuB |
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Chlorobium phaeobacteroides BS1 Site: position = -459 score = 75.37 sequence = TGTTCTTTCTTTTAT... Gene: Cphamn1_1519: Outer membrane vitamin B12 receptor BtuB |
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Chlorobaculum parvum NCIB 8327 Site: position = -451 score = 72.36 sequence = GTTCTTTTACATGAT... Gene: Cpar_1184: Outer membrane vitamin B12 receptor BtuB |
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Pelodictyon luteolum DSM 273 Site: position = -487 score = 78.74 sequence = TTGTTCTTTCAGCGT... Gene: Plut_1142: Outer membrane vitamin B12 receptor BtuB |
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Prosthecochloris vibrioformis DSM 265 Site: position = -302 score = 75.07 sequence = GTTCTTTCAGCGTAG... Gene: Cvib_0812: Outer membrane vitamin B12 receptor BtuB |
*2
Chlorobium limicola DSM 245 Site: position = -509 score = 74.69 sequence = TCTTTCTCGTCATAA... Gene: Clim_1001: Outer membrane vitamin B12 receptor BtuB Site: position = -492 score = 74.78 sequence = GTTCTTTCGTCGTAG... Gene: Clim_1064: Outer membrane vitamin B12 receptor BtuB |
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Chlorobium phaeobacteroides DSM 266 Site: position = -618 score = 76.25 sequence = TCTTTCTGTTCGTAG... Gene: Cpha266_1115: Outer membrane vitamin B12 receptor BtuB |
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Chlorobium ferrooxidans DSM 13031 Site: position = -493 score = 73.03 sequence = TTGTTCTTTCGTCGT... Gene: CferDRAFT_0905: Outer membrane vitamin B12 receptor BtuB |
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Pelodictyon phaeoclathratiforme BU-1 Site: position = -512 score = 75.0 sequence = GTTCTTTCGTCGTAG... Gene: Ppha_1262: Outer membrane vitamin B12 receptor BtuB |
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Outer membrane vitamin B12 receptor BtuB |
| Clim_1002 |
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Gene: Paes_1300: 4Fe-4S ferredoxin iron-sulfur binding domain protein |
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Gene: Clim_1002: 4Fe-4S ferredoxin iron-sulfur binding domain protein |
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4Fe-4S ferredoxin iron-sulfur binding domain protein |
| btuC |
Gene: Cag_0754: Vitamin B12 ABC transporter, permease component BtuC |
2
Prosthecochloris aestuarii DSM 271 Gene: Paes_1266: Vitamin B12 ABC transporter, permease component BtuC Gene: Paes_1298: Vitamin B12 ABC transporter, permease component BtuC |
Gene: Cphamn1_1513: Vitamin B12 ABC transporter, permease component BtuC |
Gene: Cpar_1177: Vitamin B12 ABC transporter, permease component BtuC |
Gene: Plut_1136: Vitamin B12 ABC transporter, permease component BtuC |
Gene: Cvib_0818: Vitamin B12 ABC transporter, permease component BtuC |
2
Chlorobium limicola DSM 245 Gene: Clim_1004: Vitamin B12 ABC transporter, permease component BtuC Gene: Clim_1070: Vitamin B12 ABC transporter, permease component BtuC |
Gene: Cpha266_1121: Vitamin B12 ABC transporter, permease component BtuC |
Gene: CferDRAFT_0899: Vitamin B12 ABC transporter, permease component BtuC |
Gene: Ppha_1268: Vitamin B12 ABC transporter, permease component BtuC |
Gene: Ctha_2450: Vitamin B12 ABC transporter, permease component BtuC |
Vitamin B12 ABC transporter, permease component BtuC |
| btuD |
Gene: Cag_1079: Vitamin B12 ABC transporter, ATPase component BtuD |
2
Prosthecochloris aestuarii DSM 271 Gene: Paes_1265: Vitamin B12 ABC transporter, ATPase component BtuD Gene: Paes_1297: Vitamin B12 ABC transporter, ATPase component BtuD |
Gene: Cphamn1_1512: Vitamin B12 ABC transporter, ATPase component BtuD |
Gene: Cpar_1176: Vitamin B12 ABC transporter, ATPase component BtuD |
Gene: Plut_1135: Vitamin B12 ABC transporter, ATPase component BtuD |
Gene: Cvib_0819: Vitamin B12 ABC transporter, ATPase component BtuD |
2
Chlorobium limicola DSM 245 Gene: Clim_1005: Vitamin B12 ABC transporter, ATPase component BtuD Gene: Clim_1071: Vitamin B12 ABC transporter, ATPase component BtuD |
Gene: Cpha266_1122: Vitamin B12 ABC transporter, ATPase component BtuD |
Gene: CferDRAFT_0898: Vitamin B12 ABC transporter, ATPase component BtuD |
Gene: Ppha_1269: Vitamin B12 ABC transporter, ATPase component BtuD |
Gene: Ctha_2449: Vitamin B12 ABC transporter, ATPase component BtuD |
Vitamin B12 ABC transporter, ATPase component BtuD |
| btuF2 |
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Gene: Paes_1296: Vitamin B12 ABC transporter, B12-binding component BtuF |
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Gene: Clim_1006: Vitamin B12 ABC transporter, B12-binding component BtuF |
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Vitamin B12 ABC transporter, B12-binding component BtuF |
| cbiK |
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Gene: Paes_1292: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) |
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Gene: Cpar_1479: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) |
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Gene: Clim_1010: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) |
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Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) |
| cbiGF |
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Gene: Paes_1288: Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) |
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Gene: Cpar_1475: Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) |
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Gene: Clim_1014: Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) |
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Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) |
| cbiJ |
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Gene: Paes_1287: Precorrin-6x reductase CbiJ (EC 1.3.1.54) |
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Precorrin-6x reductase CbiJ (EC 1.3.1.54) |
| cbiD |
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Gene: Paes_1286: Cobalt-precorrin-6 synthase, anaerobic |
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Cobalt-precorrin-6 synthase, anaerobic |
| cbiP |
Gene: Cag_1012: Cobyric acid synthase |
Gene: Paes_1269: Cobyric acid synthase |
Gene: Cphamn1_1516: Cobyric acid synthase |
Gene: Cpar_1181: Cobyric acid synthase |
Gene: Plut_1140: Cobyric acid synthase |
Gene: Cvib_0814: Cobyric acid synthase |
Gene: Clim_1066: Cobyric acid synthase |
Gene: Cpha266_1117: Cobyric acid synthase |
Gene: CferDRAFT_0903: Cobyric acid synthase |
Gene: Ppha_1264: Cobyric acid synthase |
Gene: Ctha_1276: Cobyric acid synthase |
Cobyric acid synthase |
| cobD |
Gene: Cag_1011: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
Gene: Paes_1268: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
Gene: Cphamn1_1515: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
Gene: Cpar_1180: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
Gene: Plut_1139: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
Gene: Cvib_0815: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
Gene: Clim_1067: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
Gene: Cpha266_1118: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
Gene: CferDRAFT_0902: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
Gene: Ppha_1265: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
Gene: Ctha_1274: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
| cbiB |
Gene: Cag_0757: Adenosylcobinamide-phosphate synthase |
Gene: Paes_1267: Adenosylcobinamide-phosphate synthase |
Gene: Cphamn1_1514: Adenosylcobinamide-phosphate synthase |
Gene: Cpar_1179: Adenosylcobinamide-phosphate synthase |
Gene: Plut_1138: Adenosylcobinamide-phosphate synthase |
Gene: Cvib_0816: Adenosylcobinamide-phosphate synthase |
Gene: Clim_1068: Adenosylcobinamide-phosphate synthase |
Gene: Cpha266_1119: Adenosylcobinamide-phosphate synthase |
Gene: CferDRAFT_0901: Adenosylcobinamide-phosphate synthase |
Gene: Ppha_1266: Adenosylcobinamide-phosphate synthase |
Gene: Ctha_1273: Adenosylcobinamide-phosphate synthase |
Adenosylcobinamide-phosphate synthase |
| pduO |
Gene: Cag_0753: Cob(I)alamin adenosyltransferase PduO (EC 2.5.1.17) |
Gene: Paes_0326: Cob(I)alamin adenosyltransferase PduO (EC 2.5.1.17) |
Gene: Cphamn1_1511: Cob(I)alamin adenosyltransferase PduO (EC 2.5.1.17) |
Gene: Cpar_1178: Cob(I)alamin adenosyltransferase PduO (EC 2.5.1.17) |
Gene: Plut_1137: Cob(I)alamin adenosyltransferase PduO (EC 2.5.1.17) |
Gene: Cvib_0817: Cob(I)alamin adenosyltransferase PduO (EC 2.5.1.17) |
Gene: Clim_1069: Cob(I)alamin adenosyltransferase PduO (EC 2.5.1.17) |
Gene: Cpha266_1120: Cob(I)alamin adenosyltransferase PduO (EC 2.5.1.17) |
Gene: CferDRAFT_0900: Cob(I)alamin adenosyltransferase PduO (EC 2.5.1.17) |
Gene: Ppha_1267: Cob(I)alamin adenosyltransferase PduO (EC 2.5.1.17) |
Gene: Ctha_2211: Cob(I)alamin adenosyltransferase PduO (EC 2.5.1.17) |
Cob(I)alamin adenosyltransferase PduO (EC 2.5.1.17) |
| PF01261 |
Gene: Cag_1076: Xylose isomerase domain protein TIM barrel |
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Gene: Cpar_1175: Xylose isomerase domain protein TIM barrel |
Gene: Plut_1134: Xylose isomerase domain protein TIM barrel |
Gene: Cvib_0820: Xylose isomerase domain protein TIM barrel |
Gene: Clim_1072: Xylose isomerase domain protein TIM barrel |
Gene: Cpha266_1123: Xylose isomerase domain protein TIM barrel |
Gene: CferDRAFT_0897: Xylose isomerase domain protein TIM barrel |
Gene: Ppha_1270: Xylose isomerase domain protein TIM barrel |
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Xylose isomerase domain protein TIM barrel |
| cobU |
Gene: Cag_0846: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
Gene: Paes_1255: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
Gene: Cphamn1_1493: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
Gene: Cpar_1174: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
Gene: Plut_1133: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
Gene: Cvib_0821: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
Gene: Clim_1078: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
Gene: Cpha266_0998: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
2
Chlorobium ferrooxidans DSM 13031 Gene: CferDRAFT_0594: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) Gene: CferDRAFT_1508: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
Gene: Ppha_1293: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
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Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
| cobT |
Gene: Cag_1058: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
Gene: Paes_1254: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
Gene: Cphamn1_1492: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
Gene: Cpar_1173: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
Gene: Plut_1132: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
Gene: Cvib_0822: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
Gene: Clim_1079: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
Gene: Cpha266_0999: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
Gene: CferDRAFT_0593: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
Gene: Ppha_1294: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
Gene: Ctha_0107: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
| Cag_0837 |
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Gene: Cpar_1172: Alpha/beta hydrolase fold |
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Alpha/beta hydrolase fold |
| cobS |
Gene: Cag_1057: Cobalamin-5-phosphate synthase CobS |
Gene: Paes_1252: Cobalamin-5-phosphate synthase CobS |
Gene: Cphamn1_1490: Cobalamin-5-phosphate synthase CobS |
Gene: Cpar_1171: Cobalamin-5-phosphate synthase CobS |
Gene: Plut_1131: Cobalamin-5-phosphate synthase CobS |
Gene: Cvib_0823: Cobalamin-5-phosphate synthase CobS |
Gene: Clim_1081: Cobalamin-5-phosphate synthase CobS |
Gene: Cpha266_1000: Cobalamin-5-phosphate synthase CobS |
Gene: CferDRAFT_0592: Cobalamin-5-phosphate synthase CobS |
Gene: Ppha_1295: Cobalamin-5-phosphate synthase CobS |
Gene: Ctha_0108: Cobalamin-5-phosphate synthase CobS |
Cobalamin-5-phosphate synthase CobS |
| porB |
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*
Prosthecochloris aestuarii DSM 271 Site: position = -440 score = 93.84 sequence = GATATCAGAAATACT... Gene: Paes_0325: Predicted porin, Gram-negative type |
Gene: Cphamn1_0352: Predicted porin, Gram-negative type |
*
Chlorobaculum parvum NCIB 8327 Site: position = -616 score = 91.81 sequence = ATACTTCATCCGAAC... Gene: Cpar_1485: Predicted porin, Gram-negative type |
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Gene: Clim_1059: Predicted porin, Gram-negative type |
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Predicted porin, Gram-negative type |
| cbiJD |
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Gene: Cpar_1474: Cobalt-precorrin-6x reductase (EC 1.3.1.54) / Cobalt-precorrin-6 synthase, anaerobic |
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Gene: Ctha_2212: Cobalt-precorrin-6x reductase (EC 1.3.1.54) / Cobalt-precorrin-6 synthase, anaerobic |
Cobalt-precorrin-6x reductase (EC 1.3.1.54) / Cobalt-precorrin-6 synthase, anaerobic |
| nrdD |
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*
Prosthecochloris aestuarii DSM 271 Site: position = -355 score = 94.09 sequence = TTGTATTGGGGAAGC... Gene: Paes_0906: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Chlorobium phaeobacteroides BS1 Site: position = -359 score = 101.75 sequence = GATTTTTGATAAAGC... Gene: Cphamn1_1191: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
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Prosthecochloris vibrioformis DSM 265 Site: position = -356 score = 78.04 sequence = TTCTTTCATTGTATG... Gene: Cvib_0807: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Chlorobium limicola DSM 245 Site: position = -2702 score = 98.79 sequence = TTTTACTGATGAAGC... Gene: Clim_1057: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
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Gene: Ppha_2622: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Chloroherpeton thalassium ATCC 35110 Site: position = -133 score = 18.63 sequence = GGAAGTCCTGTGAGA... Gene: Ctha_0685: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
| nrdG |
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Gene: Paes_0907: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: Cphamn1_1192: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
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Gene: Cvib_0808: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: Clim_1058: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
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Gene: Ppha_2621: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: Ctha_0686: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
| Ppha_2623 |
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*
Pelodictyon phaeoclathratiforme BU-1 Site: position = -326 score = 100.1 sequence = TTTTTTACTGATGAA... Gene: Ppha_2623: Hypothetical protein |
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Hypothetical protein |
| cbiA |
Gene: Cag_1429: Cobyrinic acid a,c-diamide synthase CbiA |
Gene: Paes_0327: Cobyrinic acid a,c-diamide synthase CbiA |
Gene: Cphamn1_0353: Cobyrinic acid a,c-diamide synthase CbiA |
Gene: Cpar_1191: Cobyrinic acid a,c-diamide synthase CbiA |
Gene: Plut_1935: Cobyrinic acid a,c-diamide synthase CbiA |
Gene: Cvib_0809: Cobyrinic acid a,c-diamide synthase CbiA |
Gene: Clim_0252: Cobyrinic acid a,c-diamide synthase CbiA |
Gene: Cpha266_0312: Cobyrinic acid a,c-diamide synthase CbiA |
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Gene: Ppha_1761: Cobyrinic acid a,c-diamide synthase CbiA |
Gene: Ctha_0796: Cobyrinic acid a,c-diamide synthase CbiA |
Cobyrinic acid a,c-diamide synthase CbiA |
| CRON 3. | ||||||||||||
| btuB6 |
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*
Chloroherpeton thalassium ATCC 35110 Site: position = -415 score = 79.4 sequence = ATATCTACGCTTATT... Gene: Ctha_1003: Outer membrane vitamin B12 receptor BtuB |
Outer membrane vitamin B12 receptor BtuB |
| btuN |
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Gene: Ctha_1004: Optional hypothetical component of the B12 transporter BtuN |
Optional hypothetical component of the B12 transporter BtuN |
| CRON 4. | ||||||||||||
| btuB3 |
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Prosthecochloris aestuarii DSM 271 Site: position = -476 score = 74.89 sequence = ATTGTTCTTTCTCGA... Gene: Paes_1282: Vitamin B12 transporter BtuB3 |
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Gene: Ppha_1992: Vitamin B12 transporter BtuB3 |
*
Chloroherpeton thalassium ATCC 35110 Site: position = -464 score = 80.59 sequence = AATTTTGAGTTTTAT... Gene: Ctha_2210: Vitamin B12 transporter BtuB3 |
Vitamin B12 transporter BtuB3 |
| btuC2 |
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Gene: Paes_1283: Vitamin B12 ABC transporter, permease component |
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Gene: Cpha266_0445: Vitamin B12 ABC transporter, permease component |
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Gene: Ppha_1994: Vitamin B12 ABC transporter, permease component |
Gene: Ctha_0954: Vitamin B12 ABC transporter, permease component |
Vitamin B12 ABC transporter, permease component |
| btuD2 |
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Gene: Paes_1284: Vitamin B12 ABC transporter, ATPase component |
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Gene: Cpha266_0446: Vitamin B12 ABC transporter, ATPase component |
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Gene: Ppha_1993: Vitamin B12 ABC transporter, ATPase component |
Gene: Ctha_0955: Vitamin B12 ABC transporter, ATPase component |
Vitamin B12 ABC transporter, ATPase component |
| btuF2 |
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Gene: Paes_1285: Vitamin B12 ABC transporter, B12-binding component |
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Gene: Cpha266_0448: Vitamin B12 ABC transporter, B12-binding component |
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Gene: Ppha_1991: Vitamin B12 ABC transporter, B12-binding component |
Gene: Ctha_0957: Vitamin B12 ABC transporter, B12-binding component |
Vitamin B12 ABC transporter, B12-binding component |
| CRON 5. | ||||||||||||
| aldH |
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Gene: Cpar_0871: Putative alcohole dehydrogenase |
*
Pelodictyon luteolum DSM 273 Site: position = -313 score = 73.75 sequence = CATTACCTTTGCAAT... Gene: Plut_1144: Putative alcohole dehydrogenase |
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Prosthecochloris vibrioformis DSM 265 Site: position = -317 score = 81.98 sequence = CTGATGCATGAGGTG... Gene: Cvib_0810: Putative alcohole dehydrogenase |
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Putative alcohole dehydrogenase |
| CRON 6. | ||||||||||||
| btuB5 |
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Chloroherpeton thalassium ATCC 35110 Site: position = -405 score = 89.79 sequence = TTCTTTAGAAACTGT... Gene: Ctha_2117: Outer membrane vitamin B12 receptor BtuB |
Outer membrane vitamin B12 receptor BtuB |
| Ctha_2118 |
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Gene: Ctha_2118: Conserved hypothetical protein, putative surface protein |
Conserved hypothetical protein, putative surface protein |
| btuR |
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Gene: Ctha_2119: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
| CRON 7. | ||||||||||||
| Cvib_0806 |
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*
Pelodictyon luteolum DSM 273 Site: position = -247 score = 93.66 sequence = CCTGCAAATCTAGAC... Gene: Plut_1145: Hypothetical protein |
*
Prosthecochloris vibrioformis DSM 265 Site: position = -248 score = 92.8 sequence = ATCATACTTGAACCT... Gene: Cvib_0806: Hypothetical protein |
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Hypothetical protein |
| CRON 8. | ||||||||||||
| Cpar_1207 |
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*
Chlorobaculum parvum NCIB 8327 Site: position = -244 score = 94.41 sequence = ATACTTTACACGAGC... Gene: Cpar_1207: Hypothetical protein |
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Hypothetical protein |
| CRON 9. | ||||||||||||
| btuB4 |
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Prosthecochloris aestuarii DSM 271 Site: position = -243 score = 93.57 sequence = GTGATTTTGTAAACC... Gene: Paes_1274: Outer membrane vitamin B12 receptor BtuB |
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*
Chlorobium limicola DSM 245 Site: position = -499 score = 96.56 sequence = TAAGTAATAACAGTT... Gene: Clim_1023: Outer membrane vitamin B12 receptor BtuB |
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Gene: Ctha_2448: Outer membrane vitamin B12 receptor BtuB |
Outer membrane vitamin B12 receptor BtuB |
| btuF3 |
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Gene: Clim_1024: Vitamin B12 ABC transporter, B12-binding component BtuF |
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Gene: Ctha_2447: Vitamin B12 ABC transporter, B12-binding component BtuF |
Vitamin B12 ABC transporter, B12-binding component BtuF |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |