Regulon of Cobalamin in Chloroherpeton thalassium ATCC 35110
| Regulator type: | RNA regulatory element |
| Name: | Cobalamin |
| RFAM: | RF00174 |
| Regulation mode: | |
| Biological process: | Cobalamin biosynthesis |
| Effector: | Adenosylcobalamin |
| Regulog: | Cobalamin - Chlorobiales |
| Under regulation: | |
| - Genes | 29 |
| - Operons | 6 |
Member of regulog collections
- By taxonomy - Chlorobiales
- By RNA motif - Cobalamin
- By effector - Adenosylcobalamin
- By pathway - Cobalamin biosynthesis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -405
Score: 89.8 Sequence: TTCTTTAGAAACTGT...
Locus tag: Ctha_2117
Name: btuB5 Funciton: Outer membrane vitamin B12 receptor BtuB
Locus tag: Ctha_2118
Name: null Funciton: Conserved hypothetical protein, putative surface protein
Locus tag: Ctha_2119
Name: btuR Funciton: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
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btuB5
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Outer membrane vitamin B12 receptor BtuB
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Conserved hypothetical protein, putative surface protein
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btuR
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Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
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Position: -464
Score: 80.6 Sequence: AATTTTGAGTTTTAT...
Locus tag: Ctha_2210
Name: btuB3 Funciton: Vitamin B12 transporter BtuB3 |
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btuB3
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Vitamin B12 transporter BtuB3
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Position: -415
Score: 79.4 Sequence: ATATCTACGCTTATT...
Locus tag: Ctha_1003
Name: btuB6 Funciton: Outer membrane vitamin B12 receptor BtuB
Locus tag: Ctha_1004
Name: btuN Funciton: Optional hypothetical component of the B12 transporter BtuN |
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btuB6
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Outer membrane vitamin B12 receptor BtuB
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btuN
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Optional hypothetical component of the B12 transporter BtuN
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Position: -133
Score: 18.6 Sequence: GGAAGTCCTGTGAGA...
Locus tag: Ctha_0685
Name: nrdD Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Ctha_0686
Name: nrdG Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
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nrdD
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Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
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nrdG
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Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
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Position: -227
Score: 93.6 Sequence: GTATAATTTCCCTTC...
Locus tag: Ctha_2234
Name: btuF Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF
Locus tag: Ctha_2233
Name: cbiZ Funciton: Adenosylcobinamide amidohydrolase (EC 3.5.1.90)
Locus tag: Ctha_2232
Name: PF00795 Funciton: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein
Locus tag: Ctha_2231
Name: nfo Funciton: Endonuclease IV (EC 3.1.21.2)
Locus tag: Ctha_2230
Name: cbiM Funciton: Substrate-specific component CbiM of cobalt ECF transporter
Locus tag: Ctha_2229
Name: cbiN Funciton: Additional substrate-specific component CbiN of cobalt ECF transporter
Locus tag: Ctha_2228
Name: cbiQ Funciton: Transmembrane component CbiQ of energizing module of cobalt ECF transporter
Locus tag: Ctha_2227
Name: cbiO Funciton: ATPase component CbiO of energizing module of cobalt ECF transporter
Locus tag: Ctha_2226
Name: yeeZ Funciton: NAD-dependent epimerase/dehydratase
Locus tag: Ctha_2225
Name: bluB Funciton: Cob(II)yrinic acid a,c-diamide reductase
Locus tag: Ctha_2224
Name: cobA Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Locus tag: Ctha_2223
Name: cbiX Funciton: Sirohydrochlorin cobaltochelatase (EC 4.99.1.3)
Locus tag: Ctha_2222
Name: null Funciton: Hypothetical protein
Locus tag: Ctha_2221
Name: cbiL Funciton: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
Locus tag: Ctha_2220
Name: cbiHC Funciton: Cobalt-precorrin-3b C17-methyltransferase / Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
Locus tag: Ctha_2219
Name: null Funciton: Prevent-host-death family protein
Locus tag: Ctha_2218
Name: null Funciton: Conserved hypothetical protein
Locus tag: Ctha_2217
Name: cbiET Funciton: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) |
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btuF
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Vitamin B12 ABC transporter, B12-binding component BtuF
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cbiZ
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Adenosylcobinamide amidohydrolase (EC 3.5.1.90)
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PF00795
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Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein
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nfo
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Endonuclease IV (EC 3.1.21.2)
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cbiM
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Substrate-specific component CbiM of cobalt ECF transporter
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cbiN
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Additional substrate-specific component CbiN of cobalt ECF transporter
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cbiQ
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Transmembrane component CbiQ of energizing module of cobalt ECF transporter
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cbiO
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ATPase component CbiO of energizing module of cobalt ECF transporter
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yeeZ
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NAD-dependent epimerase/dehydratase
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bluB
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Cob(II)yrinic acid a,c-diamide reductase
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cobA
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Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
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cbiX
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Sirohydrochlorin cobaltochelatase (EC 4.99.1.3)
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Hypothetical protein
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cbiL
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Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
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cbiHC
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Cobalt-precorrin-3b C17-methyltransferase / Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
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Prevent-host-death family protein
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Conserved hypothetical protein
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cbiET
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Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)
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Position: -235
Score: 94.4 Sequence: AAATAACGGCCTGTT...
Locus tag: Ctha_2451
Name: btuF Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF
Locus tag: Ctha_2450
Name: btuC Funciton: Vitamin B12 ABC transporter, permease component BtuC
Locus tag: Ctha_2449
Name: btuD Funciton: Vitamin B12 ABC transporter, ATPase component BtuD |
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btuF
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Vitamin B12 ABC transporter, B12-binding component BtuF
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btuC
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Vitamin B12 ABC transporter, permease component BtuC
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btuD
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Vitamin B12 ABC transporter, ATPase component BtuD
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |