Regulon of Cobalamin in Chlorobium limicola DSM 245

Properties
Regulator type:	RNA regulatory element
Name:	Cobalamin
RFAM:	RF00174
Regulation mode:
Biological process:	Cobalamin biosynthesis
Effector:	Adenosylcobalamin
Regulog:	Cobalamin - Chlorobiales
Under regulation:
- Genes	32
- Operons	4

Member of regulog collections

By taxonomy - Chlorobiales
By RNA motif - Cobalamin
By effector - Adenosylcobalamin
By pathway - Cobalamin biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -2702 Score: 98.8 Sequence: TTTTACTGATGAAGC... Locus tag: Clim_1057 Name: nrdD Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) Locus tag: Clim_1058 Name: nrdG Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) Locus tag: Clim_1059 Name: porB Funciton: Predicted porin, Gram-negative type Locus tag: Clim_1060 Name: cbiM Funciton: Substrate-specific component CbiM of cobalt ECF transporter Locus tag: Clim_1061 Name: cbiN Funciton: Additional substrate-specific component CbiN of cobalt ECF transporter Locus tag: Clim_1062 Name: cbiQ Funciton: Transmembrane component CbiQ of energizing module of cobalt ECF transporter Locus tag: Clim_1063 Name: cbiO Funciton: ATPase component CbiO of energizing module of cobalt ECF transporter
	Clim_1057	nrdD	Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
	Clim_1058	nrdG	Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
	Clim_1059	porB	Predicted porin, Gram-negative type
	Clim_1060	cbiM	Substrate-specific component CbiM of cobalt ECF transporter
	Clim_1061	cbiN	Additional substrate-specific component CbiN of cobalt ECF transporter
	Clim_1062	cbiQ	Transmembrane component CbiQ of energizing module of cobalt ECF transporter
	Clim_1063	cbiO	ATPase component CbiO of energizing module of cobalt ECF transporter
Position: -492 Score: 74.8 Sequence: GTTCTTTCGTCGTAG... Locus tag: Clim_1064 Name: btuB7 Funciton: Outer membrane vitamin B12 receptor BtuB Locus tag: Clim_1065 Name: bluB Funciton: Cob(II)yrinic acid a,c-diamide reductase Locus tag: Clim_1066 Name: cbiP Funciton: Cobyric acid synthase Locus tag: Clim_1067 Name: cobD Funciton: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) Locus tag: Clim_1068 Name: cbiB Funciton: Adenosylcobinamide-phosphate synthase Locus tag: Clim_1069 Name: pduO Funciton: Cob(I)alamin adenosyltransferase PduO (EC 2.5.1.17) Locus tag: Clim_1070 Name: btuC Funciton: Vitamin B12 ABC transporter, permease component BtuC Locus tag: Clim_1071 Name: btuD Funciton: Vitamin B12 ABC transporter, ATPase component BtuD Locus tag: Clim_1072 Name: PF01261 Funciton: Xylose isomerase domain protein TIM barrel
	Clim_1064	btuB7	Outer membrane vitamin B12 receptor BtuB
	Clim_1065	bluB	Cob(II)yrinic acid a,c-diamide reductase
	Clim_1066	cbiP	Cobyric acid synthase
	Clim_1067	cobD	L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
	Clim_1068	cbiB	Adenosylcobinamide-phosphate synthase
	Clim_1069	pduO	Cob(I)alamin adenosyltransferase PduO (EC 2.5.1.17)
	Clim_1070	btuC	Vitamin B12 ABC transporter, permease component BtuC
	Clim_1071	btuD	Vitamin B12 ABC transporter, ATPase component BtuD
	Clim_1072	PF01261	Xylose isomerase domain protein TIM barrel
Position: -499 Score: 96.6 Sequence: TAAGTAATAACAGTT... Locus tag: Clim_1023 Name: btuB4 Funciton: Outer membrane vitamin B12 receptor BtuB Locus tag: Clim_1024 Name: btuF3 Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF
	Clim_1023	btuB4	Outer membrane vitamin B12 receptor BtuB
	Clim_1024	btuF3	Vitamin B12 ABC transporter, B12-binding component BtuF
Position: -509 Score: 74.7 Sequence: TCTTTCTCGTCATAA... Locus tag: Clim_1001 Name: btuB7 Funciton: Outer membrane vitamin B12 receptor BtuB Locus tag: Clim_1002 Name: null Funciton: 4Fe-4S ferredoxin iron-sulfur binding domain protein Locus tag: Clim_1003 Name: btuF Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF Locus tag: Clim_1004 Name: btuC Funciton: Vitamin B12 ABC transporter, permease component BtuC Locus tag: Clim_1005 Name: btuD Funciton: Vitamin B12 ABC transporter, ATPase component BtuD Locus tag: Clim_1006 Name: btuF2 Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF Locus tag: Clim_1007 Name: cbiZ Funciton: Adenosylcobinamide amidohydrolase (EC 3.5.1.90) Locus tag: Clim_1008 Name: PF00795 Funciton: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein Locus tag: Clim_1009 Name: cobA Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) Locus tag: Clim_1010 Name: cbiK Funciton: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) Locus tag: Clim_1011 Name: cbiL Funciton: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) Locus tag: Clim_1012 Name: cbiHC Funciton: Cobalt-precorrin-3b C17-methyltransferase / Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) Locus tag: Clim_1013 Name: cbiET Funciton: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) Locus tag: Clim_1014 Name: cbiGF Funciton: Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)
	Clim_1001	btuB7	Outer membrane vitamin B12 receptor BtuB
	Clim_1002		4Fe-4S ferredoxin iron-sulfur binding domain protein
	Clim_1003	btuF	Vitamin B12 ABC transporter, B12-binding component BtuF
	Clim_1004	btuC	Vitamin B12 ABC transporter, permease component BtuC
	Clim_1005	btuD	Vitamin B12 ABC transporter, ATPase component BtuD
	Clim_1006	btuF2	Vitamin B12 ABC transporter, B12-binding component BtuF
	Clim_1007	cbiZ	Adenosylcobinamide amidohydrolase (EC 3.5.1.90)
	Clim_1008	PF00795	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein
	Clim_1009	cobA	Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
	Clim_1010	cbiK	Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)
	Clim_1011	cbiL	Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
	Clim_1012	cbiHC	Cobalt-precorrin-3b C17-methyltransferase / Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
	Clim_1013	cbiET	Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)
	Clim_1014	cbiGF	Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of Cobalamin in Chlorobium limicola DSM 245

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --