Regulon of Cobalamin in Chlorobium limicola DSM 245
| Regulator type: | RNA regulatory element |
| Name: | Cobalamin |
| RFAM: | RF00174 |
| Regulation mode: | |
| Biological process: | Cobalamin biosynthesis |
| Effector: | Adenosylcobalamin |
| Regulog: | Cobalamin - Chlorobiales |
| Under regulation: | |
| - Genes | 32 |
| - Operons | 4 |
Member of regulog collections
- By taxonomy - Chlorobiales
- By RNA motif - Cobalamin
- By effector - Adenosylcobalamin
- By pathway - Cobalamin biosynthesis
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -2702
Score: 98.8 Sequence: TTTTACTGATGAAGC...
Locus tag: Clim_1057
Name: nrdD Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Clim_1058
Name: nrdG Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Locus tag: Clim_1059
Name: porB Funciton: Predicted porin, Gram-negative type
Locus tag: Clim_1060
Name: cbiM Funciton: Substrate-specific component CbiM of cobalt ECF transporter
Locus tag: Clim_1061
Name: cbiN Funciton: Additional substrate-specific component CbiN of cobalt ECF transporter
Locus tag: Clim_1062
Name: cbiQ Funciton: Transmembrane component CbiQ of energizing module of cobalt ECF transporter
Locus tag: Clim_1063
Name: cbiO Funciton: ATPase component CbiO of energizing module of cobalt ECF transporter |
|||
|
nrdD
|
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
|
||
|
nrdG
|
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
|
||
|
porB
|
Predicted porin, Gram-negative type
|
||
|
cbiM
|
Substrate-specific component CbiM of cobalt ECF transporter
|
||
|
cbiN
|
Additional substrate-specific component CbiN of cobalt ECF transporter
|
||
|
cbiQ
|
Transmembrane component CbiQ of energizing module of cobalt ECF transporter
|
||
|
cbiO
|
ATPase component CbiO of energizing module of cobalt ECF transporter
|
||
|
Position: -492
Score: 74.8 Sequence: GTTCTTTCGTCGTAG...
Locus tag: Clim_1064
Name: btuB7 Funciton: Outer membrane vitamin B12 receptor BtuB
Locus tag: Clim_1065
Name: bluB Funciton: Cob(II)yrinic acid a,c-diamide reductase
Locus tag: Clim_1066
Name: cbiP Funciton: Cobyric acid synthase
Locus tag: Clim_1067
Name: cobD Funciton: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
Locus tag: Clim_1068
Name: cbiB Funciton: Adenosylcobinamide-phosphate synthase
Locus tag: Clim_1069
Name: pduO Funciton: Cob(I)alamin adenosyltransferase PduO (EC 2.5.1.17)
Locus tag: Clim_1070
Name: btuC Funciton: Vitamin B12 ABC transporter, permease component BtuC
Locus tag: Clim_1071
Name: btuD Funciton: Vitamin B12 ABC transporter, ATPase component BtuD
Locus tag: Clim_1072
Name: PF01261 Funciton: Xylose isomerase domain protein TIM barrel |
|||
|
btuB7
|
Outer membrane vitamin B12 receptor BtuB
|
||
|
bluB
|
Cob(II)yrinic acid a,c-diamide reductase
|
||
|
cbiP
|
Cobyric acid synthase
|
||
|
cobD
|
L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
|
||
|
cbiB
|
Adenosylcobinamide-phosphate synthase
|
||
|
pduO
|
Cob(I)alamin adenosyltransferase PduO (EC 2.5.1.17)
|
||
|
btuC
|
Vitamin B12 ABC transporter, permease component BtuC
|
||
|
btuD
|
Vitamin B12 ABC transporter, ATPase component BtuD
|
||
|
PF01261
|
Xylose isomerase domain protein TIM barrel
|
||
|
Position: -499
Score: 96.6 Sequence: TAAGTAATAACAGTT...
Locus tag: Clim_1023
Name: btuB4 Funciton: Outer membrane vitamin B12 receptor BtuB
Locus tag: Clim_1024
Name: btuF3 Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF |
|||
|
btuB4
|
Outer membrane vitamin B12 receptor BtuB
|
||
|
btuF3
|
Vitamin B12 ABC transporter, B12-binding component BtuF
|
||
|
Position: -509
Score: 74.7 Sequence: TCTTTCTCGTCATAA...
Locus tag: Clim_1001
Name: btuB7 Funciton: Outer membrane vitamin B12 receptor BtuB
Locus tag: Clim_1002
Name: null Funciton: 4Fe-4S ferredoxin iron-sulfur binding domain protein
Locus tag: Clim_1003
Name: btuF Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF
Locus tag: Clim_1004
Name: btuC Funciton: Vitamin B12 ABC transporter, permease component BtuC
Locus tag: Clim_1005
Name: btuD Funciton: Vitamin B12 ABC transporter, ATPase component BtuD
Locus tag: Clim_1006
Name: btuF2 Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF
Locus tag: Clim_1007
Name: cbiZ Funciton: Adenosylcobinamide amidohydrolase (EC 3.5.1.90)
Locus tag: Clim_1008
Name: PF00795 Funciton: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein
Locus tag: Clim_1009
Name: cobA Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Locus tag: Clim_1010
Name: cbiK Funciton: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)
Locus tag: Clim_1011
Name: cbiL Funciton: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
Locus tag: Clim_1012
Name: cbiHC Funciton: Cobalt-precorrin-3b C17-methyltransferase / Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
Locus tag: Clim_1013
Name: cbiET Funciton: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)
Locus tag: Clim_1014
Name: cbiGF Funciton: Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) |
|||
|
btuB7
|
Outer membrane vitamin B12 receptor BtuB
|
||
|
4Fe-4S ferredoxin iron-sulfur binding domain protein
|
|||
|
btuF
|
Vitamin B12 ABC transporter, B12-binding component BtuF
|
||
|
btuC
|
Vitamin B12 ABC transporter, permease component BtuC
|
||
|
btuD
|
Vitamin B12 ABC transporter, ATPase component BtuD
|
||
|
btuF2
|
Vitamin B12 ABC transporter, B12-binding component BtuF
|
||
|
cbiZ
|
Adenosylcobinamide amidohydrolase (EC 3.5.1.90)
|
||
|
PF00795
|
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein
|
||
|
cobA
|
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
|
||
|
cbiK
|
Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)
|
||
|
cbiL
|
Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
|
||
|
cbiHC
|
Cobalt-precorrin-3b C17-methyltransferase / Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
|
||
|
cbiET
|
Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)
|
||
|
cbiGF
|
Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |