Regulon of Cobalamin in Chlorobaculum parvum NCIB 8327
| Regulator type: | RNA regulatory element |
| Name: | Cobalamin |
| RFAM: | RF00174 |
| Regulation mode: | |
| Biological process: | Cobalamin biosynthesis |
| Effector: | Adenosylcobalamin |
| Regulog: | Cobalamin - Chlorobiales |
| Under regulation: | |
| - Genes | 27 |
| - Operons | 3 |
Member of regulog collections
- By taxonomy - Chlorobiales
- By RNA motif - Cobalamin
- By effector - Adenosylcobalamin
- By pathway - Cobalamin biosynthesis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -244
Score: 94.4 Sequence: ATACTTTACACGAGC...
Locus tag: Cpar_1207
Name: Cpar_1207 Funciton: Hypothetical protein |
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Cpar_1207
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Hypothetical protein
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Position: -616
Score: 91.8 Sequence: ATACTTCATCCGAAC...
Locus tag: Cpar_1485
Name: porB Funciton: Predicted porin, Gram-negative type
Locus tag: Cpar_1484
Name: cbiM Funciton: Substrate-specific component CbiM of cobalt ECF transporter
Locus tag: Cpar_1483
Name: cbiN Funciton: Additional substrate-specific component CbiN of cobalt ECF transporter
Locus tag: Cpar_1482
Name: cbiQ Funciton: Transmembrane component CbiQ of energizing module of cobalt ECF transporter
Locus tag: Cpar_1481
Name: cbiO Funciton: ATPase component CbiO of energizing module of cobalt ECF transporter
Locus tag: Cpar_1480
Name: cobA Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Locus tag: Cpar_1479
Name: cbiK Funciton: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)
Locus tag: Cpar_1478
Name: cbiL Funciton: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
Locus tag: Cpar_1477
Name: cbiHC Funciton: Cobalt-precorrin-3b C17-methyltransferase / Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
Locus tag: Cpar_1476
Name: cbiET Funciton: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)
Locus tag: Cpar_1475
Name: cbiGF Funciton: Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)
Locus tag: Cpar_1474
Name: cbiJD Funciton: Cobalt-precorrin-6x reductase (EC 1.3.1.54) / Cobalt-precorrin-6 synthase, anaerobic |
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porB
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Predicted porin, Gram-negative type
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cbiM
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Substrate-specific component CbiM of cobalt ECF transporter
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cbiN
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Additional substrate-specific component CbiN of cobalt ECF transporter
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cbiQ
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Transmembrane component CbiQ of energizing module of cobalt ECF transporter
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cbiO
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ATPase component CbiO of energizing module of cobalt ECF transporter
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cobA
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Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
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cbiK
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Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)
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cbiL
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Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
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cbiHC
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Cobalt-precorrin-3b C17-methyltransferase / Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
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cbiET
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Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)
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cbiGF
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Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)
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cbiJD
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Cobalt-precorrin-6x reductase (EC 1.3.1.54) / Cobalt-precorrin-6 synthase, anaerobic
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Position: -451
Score: 72.4 Sequence: GTTCTTTTACATGAT...
Locus tag: Cpar_1184
Name: btuB7 Funciton: Outer membrane vitamin B12 receptor BtuB
Locus tag: Cpar_1183
Name: btuF Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF
Locus tag: Cpar_1182
Name: bluB Funciton: Cob(II)yrinic acid a,c-diamide reductase
Locus tag: Cpar_1181
Name: cbiP Funciton: Cobyric acid synthase
Locus tag: Cpar_1180
Name: cobD Funciton: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
Locus tag: Cpar_1179
Name: cbiB Funciton: Adenosylcobinamide-phosphate synthase
Locus tag: Cpar_1178
Name: pduO Funciton: Cob(I)alamin adenosyltransferase PduO (EC 2.5.1.17)
Locus tag: Cpar_1177
Name: btuC Funciton: Vitamin B12 ABC transporter, permease component BtuC
Locus tag: Cpar_1176
Name: btuD Funciton: Vitamin B12 ABC transporter, ATPase component BtuD
Locus tag: Cpar_1175
Name: PF01261 Funciton: Xylose isomerase domain protein TIM barrel
Locus tag: Cpar_1174
Name: cobU Funciton: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
Locus tag: Cpar_1173
Name: cobT Funciton: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
Locus tag: Cpar_1172
Name: null Funciton: Alpha/beta hydrolase fold
Locus tag: Cpar_1171
Name: cobS Funciton: Cobalamin-5-phosphate synthase CobS |
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btuB7
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Outer membrane vitamin B12 receptor BtuB
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btuF
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Vitamin B12 ABC transporter, B12-binding component BtuF
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bluB
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Cob(II)yrinic acid a,c-diamide reductase
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cbiP
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Cobyric acid synthase
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cobD
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L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
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cbiB
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Adenosylcobinamide-phosphate synthase
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pduO
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Cob(I)alamin adenosyltransferase PduO (EC 2.5.1.17)
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btuC
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Vitamin B12 ABC transporter, permease component BtuC
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btuD
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Vitamin B12 ABC transporter, ATPase component BtuD
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PF01261
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Xylose isomerase domain protein TIM barrel
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cobU
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Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
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cobT
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Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
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Alpha/beta hydrolase fold
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cobS
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Cobalamin-5-phosphate synthase CobS
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |