Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Cobalamin in Prosthecochloris aestuarii DSM 271

Properties
Regulator type: RNA regulatory element
Name: Cobalamin
RFAM: RF00174
Regulation mode:
Biological process: Cobalamin biosynthesis
Effector: Adenosylcobalamin
Regulog: Cobalamin - Chlorobiales
Under regulation:
- Genes 34
- Operons 7
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -476
Score: 74.9
Sequence: ATTGTTCTTTCTCGA...
Locus tag: Paes_1282
Name: btuB3
Funciton: Vitamin B12 transporter BtuB3
Locus tag: Paes_1283
Name: btuC2
Funciton: Vitamin B12 ABC transporter, permease component
Locus tag: Paes_1284
Name: btuD2
Funciton: Vitamin B12 ABC transporter, ATPase component
Locus tag: Paes_1285
Name: btuF2
Funciton: Vitamin B12 ABC transporter, B12-binding component
Paes_1282
btuB3
Vitamin B12 transporter BtuB3
Paes_1283
btuC2
Vitamin B12 ABC transporter, permease component
Paes_1284
btuD2
Vitamin B12 ABC transporter, ATPase component
Paes_1285
btuF2
Vitamin B12 ABC transporter, B12-binding component
Position: -197
Score: 97.6
Sequence: TTTCTTATTGGTGAA...
Locus tag: Paes_1272
Name: metE
Funciton: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
Paes_1272
metE
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
Position: -243
Score: 93.6
Sequence: GTGATTTTGTAAACC...
Locus tag: Paes_1274
Name: btuB4
Funciton: Outer membrane vitamin B12 receptor BtuB
Paes_1274
btuB4
Outer membrane vitamin B12 receptor BtuB
Position: -518
Score: 81.9
Sequence: TGTTCTTTCGCTTGT...
Locus tag: Paes_1301
Name: btuB7
Funciton: Outer membrane vitamin B12 receptor BtuB
Locus tag: Paes_1300
Name: null
Funciton: 4Fe-4S ferredoxin iron-sulfur binding domain protein
Locus tag: Paes_1299
Name: btuF
Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF
Locus tag: Paes_1298
Name: btuC
Funciton: Vitamin B12 ABC transporter, permease component BtuC
Locus tag: Paes_1297
Name: btuD
Funciton: Vitamin B12 ABC transporter, ATPase component BtuD
Locus tag: Paes_1296
Name: btuF2
Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF
Locus tag: Paes_1295
Name: cbiZ
Funciton: Adenosylcobinamide amidohydrolase (EC 3.5.1.90)
Locus tag: Paes_1294
Name: PF00795
Funciton: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein
Locus tag: Paes_1293
Name: cobA
Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Locus tag: Paes_1292
Name: cbiK
Funciton: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)
Locus tag: Paes_1291
Name: cbiL
Funciton: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
Locus tag: Paes_1290
Name: cbiHC
Funciton: Cobalt-precorrin-3b C17-methyltransferase / Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
Locus tag: Paes_1289
Name: cbiET
Funciton: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)
Locus tag: Paes_1288
Name: cbiGF
Funciton: Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)
Locus tag: Paes_1287
Name: cbiJ
Funciton: Precorrin-6x reductase CbiJ (EC 1.3.1.54)
Locus tag: Paes_1286
Name: cbiD
Funciton: Cobalt-precorrin-6 synthase, anaerobic
Paes_1301
btuB7
Outer membrane vitamin B12 receptor BtuB
Paes_1300
4Fe-4S ferredoxin iron-sulfur binding domain protein
Paes_1299
btuF
Vitamin B12 ABC transporter, B12-binding component BtuF
Paes_1298
btuC
Vitamin B12 ABC transporter, permease component BtuC
Paes_1297
btuD
Vitamin B12 ABC transporter, ATPase component BtuD
Paes_1296
btuF2
Vitamin B12 ABC transporter, B12-binding component BtuF
Paes_1295
cbiZ
Adenosylcobinamide amidohydrolase (EC 3.5.1.90)
Paes_1294
PF00795
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein
Paes_1293
cobA
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Paes_1292
cbiK
Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)
Paes_1291
cbiL
Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
Paes_1290
cbiHC
Cobalt-precorrin-3b C17-methyltransferase / Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
Paes_1289
cbiET
Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)
Paes_1288
cbiGF
Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)
Paes_1287
cbiJ
Precorrin-6x reductase CbiJ (EC 1.3.1.54)
Paes_1286
cbiD
Cobalt-precorrin-6 synthase, anaerobic
Position: -355
Score: 94.1
Sequence: TTGTATTGGGGAAGC...
Locus tag: Paes_0906
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Paes_0907
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Paes_0906
nrdD
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Paes_0907
nrdG
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Position: -440
Score: 93.8
Sequence: GATATCAGAAATACT...
Locus tag: Paes_0325
Name: porB
Funciton: Predicted porin, Gram-negative type
Locus tag: Paes_0326
Name: pduO
Funciton: Cob(I)alamin adenosyltransferase PduO (EC 2.5.1.17)
Locus tag: Paes_0327
Name: cbiA
Funciton: Cobyrinic acid a,c-diamide synthase CbiA
Paes_0325
porB
Predicted porin, Gram-negative type
Paes_0326
pduO
Cob(I)alamin adenosyltransferase PduO (EC 2.5.1.17)
Paes_0327
cbiA
Cobyrinic acid a,c-diamide synthase CbiA
Position: -454
Score: 76.5
Sequence: TGTTCTTTCTCTTGT...
Locus tag: Paes_1271
Name: btuB7
Funciton: Outer membrane vitamin B12 receptor BtuB
Locus tag: Paes_1270
Name: bluB
Funciton: Cob(II)yrinic acid a,c-diamide reductase
Locus tag: Paes_1269
Name: cbiP
Funciton: Cobyric acid synthase
Locus tag: Paes_1268
Name: cobD
Funciton: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
Locus tag: Paes_1267
Name: cbiB
Funciton: Adenosylcobinamide-phosphate synthase
Locus tag: Paes_1266
Name: btuC
Funciton: Vitamin B12 ABC transporter, permease component BtuC
Locus tag: Paes_1265
Name: btuD
Funciton: Vitamin B12 ABC transporter, ATPase component BtuD
Paes_1271
btuB7
Outer membrane vitamin B12 receptor BtuB
Paes_1270
bluB
Cob(II)yrinic acid a,c-diamide reductase
Paes_1269
cbiP
Cobyric acid synthase
Paes_1268
cobD
L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
Paes_1267
cbiB
Adenosylcobinamide-phosphate synthase
Paes_1266
btuC
Vitamin B12 ABC transporter, permease component BtuC
Paes_1265
btuD
Vitamin B12 ABC transporter, ATPase component BtuD
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