Regulog LiuR - Oceanospirillales/Alteromonadales
| Regulator type: | Transcription factor |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LiuR
- By taxonomy - Oceanospirillales/Alteromonadales
- By TF family - MerR
- By pathway - Branched-chain amino acid degradation
| Genome | Genes | Operons |
|---|---|---|
| Hahella chejuensis KCTC 2396 | 4 | 2 |
| Marinobacter aqueolei | 9 | 4 |
| Marinobacter sp. ELB17 | 15 | 4 |
| Oceanobacter sp. RED65 | ||
| Oceanospirillum sp. MED92 | 10 | 3 |
| Marinomonas sp. MWYL1 | ||
| Saccharophagus degradans 2-40 | ||
| Teredinibacter turnerae T7901 | ||
| Cellvibrio japonicus Ueda107 | ||
| Chromohalobacter salexigens DSM 3043 | ||
| Reinekea sp. MED297 | 7 | 3 |
| Alcanivorax borkumensis SK2 | 7 | 2 |
| Genes | Function | ||||||||||||
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| CRON 1. | |||||||||||||
| fabG |
Gene: HCH_05141: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) |
Gene: Maqu_2017: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) |
Gene: MELB17_18234: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) |
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Alcanivorax borkumensis SK2 Site: position = -16 score = 5.09858 sequence = GTTTACCCTAAGGTAAAT Gene: ABO_1713: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) |
3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) |
| CRON 2. | |||||||||||||
| paaG |
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Marinobacter sp. ELB17 Site: position = -121 score = 5.45831 sequence = GTTTACGTAAACGTTAGG Gene: MELB17_05192: Enoyl-CoA hydratase/isomerase |
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Enoyl-CoA hydratase/isomerase |
| CRON 3. | |||||||||||||
| ldh |
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Marinobacter aqueolei Site: position = -172 score = 5.84617 sequence = GTTGACGTTCACGTAAAC Gene: Maqu_2878: Leucine dehydrogenase (EC 1.4.1.9) |
Gene: MELB17_05137: Leucine dehydrogenase (EC 1.4.1.9) |
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Gene: MED92_01474: Leucine dehydrogenase (EC 1.4.1.9) |
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Gene: MED297_20272: Leucine dehydrogenase (EC 1.4.1.9) |
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Leucine dehydrogenase (EC 1.4.1.9) |
| CRON 4. | |||||||||||||
| mmgB |
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Reinekea sp. MED297 Site: position = -79 score = 5.16834 sequence = GTTAACGTAAACGAAAAC Site: position = -85 score = 6.18168 sequence = GTTGACGTTAACGTAAAC Gene: MED297_07476: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
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3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
| CRON 5. | |||||||||||||
| bkdA1 |
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Hahella chejuensis KCTC 2396 Site: position = -123 score = 4.85852 sequence = GTTTACGTCAACGTCACT Site: position = -129 score = 5.34112 sequence = GCTGACGTTTACGTCAAC Gene: HCH_03687: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) |
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Marinobacter aqueolei Site: position = -130 score = 6.18029 sequence = GTTTACGTTAAGGTAAAG Gene: Maqu_1382: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) |
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Marinobacter sp. ELB17 Site: position = -145 score = 5.87027 sequence = CTTTACGTTAAGGTCAAC Gene: MELB17_06329: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) |
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Gene: MED297_19147: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) |
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Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) |
| bkdA2 |
Gene: HCH_03686: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) |
Gene: Maqu_1381: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) |
Gene: MELB17_06324: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) |
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Gene: MED297_19142: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) |
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Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) |
| bkdB |
Gene: HCH_03685: Dihydrolipoamide acyltransferase component of branched-chain alpa-keto acid dehydrogenase complex (EC 2.3.1.168) |
Gene: Maqu_1380: Dihydrolipoamide acyltransferase component of branched-chain alpa-keto acid dehydrogenase complex (EC 2.3.1.168) |
Gene: MELB17_06319: Dihydrolipoamide acyltransferase component of branched-chain alpa-keto acid dehydrogenase complex (EC 2.3.1.168) |
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Gene: MED297_19137: Dihydrolipoamide acyltransferase component of branched-chain alpa-keto acid dehydrogenase complex (EC 2.3.1.168) |
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Dihydrolipoamide acyltransferase component of branched-chain alpa-keto acid dehydrogenase complex (EC 2.3.1.168) |
| CRON 6. | |||||||||||||
| ivdG |
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Marinobacter aqueolei Site: position = -83 score = 6.33972 sequence = GTTTACGTAAACGTAAAG Site: position = -89 score = 5.16834 sequence = GTTAAAGTTTACGTAAAC Gene: Maqu_2119: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
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Marinobacter sp. ELB17 Site: position = -58 score = 6.33972 sequence = GTTTACGTAAACGTAAAG Site: position = -64 score = 5.16834 sequence = GTTAAAGTTTACGTAAAC Gene: MELB17_07894: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
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Gene: MED297_15460: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
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3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
| acdH |
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Gene: Maqu_2118: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: MELB17_07899: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
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Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
| ivdA |
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Gene: Maqu_2117: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) |
Gene: MELB17_07904: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) |
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Oceanospirillum sp. MED92 Site: position = -46 score = 5.69938 sequence = GTTGACGTTTACGTCAAC Gene: MED92_06108: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) |
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Gene: MED297_15465: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) |
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3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) |
| CRON 7. | |||||||||||||
| liuR |
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Hahella chejuensis KCTC 2396 Site: position = -58 score = 6.00939 sequence = GTTGACGTAAACGTAAAC Site: position = -64 score = 4.85339 sequence = TATAACGTTGACGTAAAC Gene: HCH_03942: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
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Marinobacter aqueolei Site: position = -46 score = 5.16834 sequence = GTTTACGTAAACTTTAAC Site: position = -52 score = 6.33972 sequence = CTTTACGTTTACGTAAAC Gene: Maqu_2120: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
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Marinobacter sp. ELB17 Site: position = -45 score = 5.16834 sequence = GTTTACGTAAACTTTAAC Site: position = -51 score = 6.33972 sequence = CTTTACGTTTACGTAAAC Gene: MELB17_07889: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
Gene: RED65_07414: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
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Oceanospirillum sp. MED92 Site: position = -65 score = 4.63226 sequence = ATTGATCTTTACGTAAAC Site: position = -59 score = 6.0297 sequence = CTTTACGTAAACGTCAAC Gene: MED92_06078: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
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Reinekea sp. MED297 Site: position = -99 score = 6.18168 sequence = GTTTACGTTAACGTCAAC Site: position = -105 score = 5.16834 sequence = GTTTTCGTTTACGTTAAC Gene: MED297_07471: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
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Alcanivorax borkumensis SK2 Site: position = -36 score = 6.51201 sequence = CTTTACGTTAACGTAAAC Gene: ABO_1241: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
| liuA |
Gene: HCH_03943: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: Maqu_2121: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: MELB17_07884: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: RED65_07419: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: MED92_06073: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
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Reinekea sp. MED297 Site: position = -60 score = 4.85852 sequence = GTTTACGTCAACGTCACT Site: position = -66 score = 5.69938 sequence = GTTGACGTTTACGTCAAC Gene: MED297_19182: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: ABO_1240: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
| liuB |
Gene: HCH_03944: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: Maqu_2123: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: MELB17_07879: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: RED65_07424: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: MED92_06068: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
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Gene: MED297_19172: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: ABO_1239: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
| liuC |
Gene: HCH_03945: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: Maqu_2124: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: MELB17_07874: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: RED65_07429: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: MED92_06063: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
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Gene: MED297_19167: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: ABO_1238: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
| liuD |
Gene: HCH_03946: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Gene: Maqu_2125: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Gene: MELB17_07869: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Gene: RED65_07434: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Gene: MED92_06058: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
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Gene: MED297_19157: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Gene: ABO_1237: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
| liuE |
Gene: HCH_03947: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
Gene: Maqu_2126: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
Gene: MELB17_07864: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
Gene: RED65_07439: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
Gene: MED92_06053: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
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Gene: CJA_2967: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
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Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
| ahpD |
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Gene: Maqu_3407: alkylhydroperoxidase AhpD family core domain protein |
Gene: MELB17_07859: alkylhydroperoxidase AhpD family core domain protein |
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Oceanospirillum sp. MED92 Gene: MED92_06048: alkylhydroperoxidase AhpD family core domain protein Gene: MED92_06193: alkylhydroperoxidase AhpD family core domain protein |
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alkylhydroperoxidase AhpD family core domain protein |
| acs |
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Gene: MELB17_07854: acyl-CoA synthase |
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Gene: MED92_06043: acyl-CoA synthase |
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acyl-CoA synthase |
| aacS |
Gene: HCH_03948: Acetoacetyl-CoA synthetase (EC 6.2.1.16) |
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Gene: RED65_11625: Acetoacetyl-CoA synthetase (EC 6.2.1.16) |
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Oceanospirillum sp. MED92 Site: position = -108 score = 5.69149 sequence = GTTTCCGTTTACGTAAAC Gene: MED92_12069: Acetoacetyl-CoA synthetase (EC 6.2.1.16) |
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Gene: Sde_0006: Acetoacetyl-CoA synthetase (EC 6.2.1.16) |
Gene: TERTU_0022: Acetoacetyl-CoA synthetase (EC 6.2.1.16) |
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Gene: Csal_1820: Acetoacetyl-CoA synthetase (EC 6.2.1.16) |
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Gene: ABO_1236: Acetoacetyl-CoA synthetase (EC 6.2.1.16) |
Acetoacetyl-CoA synthetase (EC 6.2.1.16) |
| mmgC |
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Gene: MED297_19177: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
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Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |