Regulon of LiuR in Oceanospirillum sp. MED92
| Regulator type: | Transcription factor |
| TF locus tag: | MED92_06078 |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Regulog: | LiuR - Oceanospirillales/Alteromonadales |
| Statistics of regulated genes: | |
| - Genes | 10 |
| - Operons | 3 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LiuR
- By taxonomy - Oceanospirillales/Alteromonadales
- By TF family - MerR
- By pathway - Branched-chain amino acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -46
Score: 5.7 Sequence: GTTGACGTTTACGTCAAC
Locus tag: MED92_06108
Name: ivdA Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) |
|||
|
ivdA
|
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
|
||
|
Position: -108
Score: 5.7 Sequence: GTTTCCGTTTACGTAAAC
Locus tag: MED92_12069
Name: aacS Funciton: Acetoacetyl-CoA synthetase (EC 6.2.1.16) |
|||
|
aacS
|
Acetoacetyl-CoA synthetase (EC 6.2.1.16)
|
||
|
Position: -65
Score: 4.6 Sequence: ATTGATCTTTACGTAAAC
Position: -59
Score: 6 Sequence: CTTTACGTAAACGTCAAC
Locus tag: MED92_06078
Name: liuR Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: MED92_06073
Name: liuA Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Locus tag: MED92_06068
Name: liuB Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: MED92_06063
Name: liuC Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: MED92_06058
Name: liuD Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: MED92_06053
Name: liuE Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Locus tag: MED92_06048
Name: ahpD Funciton: alkylhydroperoxidase AhpD family core domain protein
Locus tag: MED92_06043
Name: acs Funciton: acyl-CoA synthase |
|||
|
liuR
|
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
|
||
|
liuA
|
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
|
||
|
liuB
|
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
|
||
|
liuC
|
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
|
||
|
liuD
|
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
|
||
|
liuE
|
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
|
||
|
ahpD
|
alkylhydroperoxidase AhpD family core domain protein
|
||
|
acs
|
acyl-CoA synthase
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |