Regulon of LiuR in Oceanospirillum sp. MED92

Properties
Regulator type:	Transcription factor
TF locus tag:	MED92_06078
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Branched-chain amino acid degradation
Effector:
Regulog:	LiuR - Oceanospirillales/Alteromonadales
Statistics of regulated genes:
- Genes	10
- Operons	3
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 28 sites [see more]

Member of regulog collections

By trascription factor - LiuR
By taxonomy - Oceanospirillales/Alteromonadales
By TF family - MerR
By pathway - Branched-chain amino acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -46 Score: 5.7 Sequence: GTTGACGTTTACGTCAAC Locus tag: MED92_06108 Name: ivdA Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
	MED92_06108	ivdA	3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Position: -108 Score: 5.7 Sequence: GTTTCCGTTTACGTAAAC Locus tag: MED92_12069 Name: aacS Funciton: Acetoacetyl-CoA synthetase (EC 6.2.1.16)
	MED92_12069	aacS	Acetoacetyl-CoA synthetase (EC 6.2.1.16)
Position: -65 Score: 4.6 Sequence: ATTGATCTTTACGTAAAC Position: -59 Score: 6 Sequence: CTTTACGTAAACGTCAAC Locus tag: MED92_06078 Name: liuR Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family Locus tag: MED92_06073 Name: liuA Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) Locus tag: MED92_06068 Name: liuB Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) Locus tag: MED92_06063 Name: liuC Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) Locus tag: MED92_06058 Name: liuD Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) Locus tag: MED92_06053 Name: liuE Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) Locus tag: MED92_06048 Name: ahpD Funciton: alkylhydroperoxidase AhpD family core domain protein Locus tag: MED92_06043 Name: acs Funciton: acyl-CoA synthase
	MED92_06078	liuR	Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
	MED92_06073	liuA	Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	MED92_06068	liuB	Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
	MED92_06063	liuC	Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
	MED92_06058	liuD	Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
	MED92_06053	liuE	Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
	MED92_06048	ahpD	alkylhydroperoxidase AhpD family core domain protein
	MED92_06043	acs	acyl-CoA synthase

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD