Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LiuR in Marinobacter sp. ELB17

Properties
Regulator type: Transcription factor
TF locus tag: MELB17_07889
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Regulog: LiuR - Oceanospirillales/Alteromonadales
Statistics of regulated genes:
- Genes 15
- Operons 4
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 28 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -121
Score: 5.5
Sequence: GTTTACGTAAACGTTAGG
Locus tag: MELB17_05192
Name: paaG
Funciton: Enoyl-CoA hydratase/isomerase
paaG
Enoyl-CoA hydratase/isomerase

Position: -145
Score: 5.9
Sequence: CTTTACGTTAAGGTCAAC
Locus tag: MELB17_06329
Name: bkdA1
Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
Locus tag: MELB17_06324
Name: bkdA2
Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
Locus tag: MELB17_06319
Name: bkdB
Funciton: Dihydrolipoamide acyltransferase component of branched-chain alpa-keto acid dehydrogenase complex (EC 2.3.1.168)
bkdA1
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
bkdA2
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
bkdB
Dihydrolipoamide acyltransferase component of branched-chain alpa-keto acid dehydrogenase complex (EC 2.3.1.168)

Position: -64
Score: 5.2
Sequence: GTTAAAGTTTACGTAAAC
Position: -58
Score: 6.3
Sequence: GTTTACGTAAACGTAAAG
Locus tag: MELB17_07894
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
Locus tag: MELB17_07899
Name: acdH
Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Locus tag: MELB17_07904
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
ivdG
3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
acdH
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
ivdA
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)

Position: -51
Score: 6.3
Sequence: CTTTACGTTTACGTAAAC
Position: -45
Score: 5.2
Sequence: GTTTACGTAAACTTTAAC
Locus tag: MELB17_07889
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: MELB17_07884
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Locus tag: MELB17_07879
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: MELB17_07874
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: MELB17_07869
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: MELB17_07864
Name: liuE
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Locus tag: MELB17_07859
Name: ahpD
Funciton: alkylhydroperoxidase AhpD family core domain protein
Locus tag: MELB17_07854
Name: acs
Funciton: acyl-CoA synthase
liuR
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
liuA
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
liuB
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
liuC
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
liuD
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
liuE
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
ahpD
alkylhydroperoxidase AhpD family core domain protein
acs
acyl-CoA synthase
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