Regulon of LiuR in Marinobacter sp. ELB17

Properties
Regulator type:	Transcription factor
TF locus tag:	MELB17_07889
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Branched-chain amino acid degradation
Effector:
Regulog:	LiuR - Oceanospirillales/Alteromonadales
Statistics of regulated genes:
- Genes	15
- Operons	4
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 28 sites [see more]

Member of regulog collections

By trascription factor - LiuR
By taxonomy - Oceanospirillales/Alteromonadales
By TF family - MerR
By pathway - Branched-chain amino acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -121 Score: 5.5 Sequence: GTTTACGTAAACGTTAGG Locus tag: MELB17_05192 Name: paaG Funciton: Enoyl-CoA hydratase/isomerase
	MELB17_05192	paaG	Enoyl-CoA hydratase/isomerase
Position: -145 Score: 5.9 Sequence: CTTTACGTTAAGGTCAAC Locus tag: MELB17_06329 Name: bkdA1 Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) Locus tag: MELB17_06324 Name: bkdA2 Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) Locus tag: MELB17_06319 Name: bkdB Funciton: Dihydrolipoamide acyltransferase component of branched-chain alpa-keto acid dehydrogenase complex (EC 2.3.1.168)
	MELB17_06329	bkdA1	Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
	MELB17_06324	bkdA2	Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
	MELB17_06319	bkdB	Dihydrolipoamide acyltransferase component of branched-chain alpa-keto acid dehydrogenase complex (EC 2.3.1.168)
Position: -64 Score: 5.2 Sequence: GTTAAAGTTTACGTAAAC Position: -58 Score: 6.3 Sequence: GTTTACGTAAACGTAAAG Locus tag: MELB17_07894 Name: ivdG Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) Locus tag: MELB17_07899 Name: acdH Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) Locus tag: MELB17_07904 Name: ivdA Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
	MELB17_07894	ivdG	3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
	MELB17_07899	acdH	Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	MELB17_07904	ivdA	3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Position: -51 Score: 6.3 Sequence: CTTTACGTTTACGTAAAC Position: -45 Score: 5.2 Sequence: GTTTACGTAAACTTTAAC Locus tag: MELB17_07889 Name: liuR Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family Locus tag: MELB17_07884 Name: liuA Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) Locus tag: MELB17_07879 Name: liuB Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) Locus tag: MELB17_07874 Name: liuC Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) Locus tag: MELB17_07869 Name: liuD Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) Locus tag: MELB17_07864 Name: liuE Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) Locus tag: MELB17_07859 Name: ahpD Funciton: alkylhydroperoxidase AhpD family core domain protein Locus tag: MELB17_07854 Name: acs Funciton: acyl-CoA synthase
	MELB17_07889	liuR	Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
	MELB17_07884	liuA	Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	MELB17_07879	liuB	Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
	MELB17_07874	liuC	Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
	MELB17_07869	liuD	Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
	MELB17_07864	liuE	Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
	MELB17_07859	ahpD	alkylhydroperoxidase AhpD family core domain protein
	MELB17_07854	acs	acyl-CoA synthase

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD